View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_low_12 (Length: 339)
Name: NF6715_low_12
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_12 |
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| [»] scaffold0039 (2 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 52506 - 52555
Alignment:
| Q |
179 |
ctctaaattattaaaaccatcttcgtgggttagaagacaaattagtaaaa |
228 |
Q |
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| T |
52506 |
ctctaaattattaaaaccatcttcgtgggttagaagacaaattagtaaaa |
52555 |
T |
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Target: scaffold0039; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 52354 - 52444
Alignment:
| Q |
22 |
atgtctaataaacactgctacgtcataaatgaatatgtcatatcatnnnnnnnnntgactaaaaatgagatgagaaaccaagatttggaagaa |
114 |
Q |
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| T |
52354 |
atgtttaataaacactgctacgtcataaatgaaaaagtcatgtcat--taaaaaatgcctaaaaatgagatgagagaccaagttttggaagaa |
52444 |
T |
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