View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6715_low_13 (Length: 335)

Name: NF6715_low_13
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6715_low_13
NF6715_low_13
[»] chr4 (38 HSPs)
chr4 (15-334)||(23817729-23818046)
chr4 (280-334)||(3340861-3340915)
chr4 (280-334)||(4955365-4955419)
chr4 (280-334)||(25483390-25483444)
chr4 (280-334)||(31691206-31691260)
chr4 (280-334)||(34646697-34646751)
chr4 (280-334)||(36629291-36629345)
chr4 (283-335)||(15841415-15841467)
chr4 (280-331)||(16889587-16889638)
chr4 (280-335)||(32941170-32941225)
chr4 (280-334)||(39404072-39404126)
chr4 (280-330)||(49880214-49880264)
chr4 (280-334)||(50630803-50630857)
chr4 (280-335)||(54017642-54017697)
chr4 (283-334)||(54936253-54936304)
chr4 (192-250)||(23826898-23826956)
chr4 (280-334)||(39792908-39792962)
chr4 (280-334)||(44621056-44621110)
chr4 (280-334)||(45496859-45496913)
chr4 (284-334)||(49302964-49303014)
chr4 (280-334)||(55933172-55933226)
chr4 (280-333)||(41370411-41370464)
chr4 (282-334)||(36608709-36608761)
chr4 (280-324)||(52884941-52884985)
chr4 (280-327)||(51768115-51768162)
chr4 (280-334)||(1731695-1731749)
chr4 (280-334)||(2741125-2741179)
chr4 (280-334)||(3244499-3244553)
chr4 (280-334)||(3271841-3271895)
chr4 (280-334)||(10245974-10246027)
chr4 (284-334)||(11706592-11706641)
chr4 (280-334)||(18932797-18932851)
chr4 (280-334)||(22028009-22028063)
chr4 (280-334)||(22028417-22028471)
chr4 (280-334)||(22183312-22183366)
chr4 (297-335)||(44620424-44620462)
chr4 (280-334)||(54108967-54109020)
chr4 (45-78)||(19388933-19388966)
[»] chr8 (33 HSPs)
chr8 (280-334)||(3669741-3669795)
chr8 (280-334)||(18372044-18372098)
chr8 (280-334)||(34834930-34834984)
chr8 (280-335)||(70323-70378)
chr8 (280-334)||(9507836-9507890)
chr8 (280-334)||(33113417-33113471)
chr8 (280-334)||(34835263-34835317)
chr8 (280-334)||(34835529-34835583)
chr8 (280-334)||(34835795-34835849)
chr8 (280-334)||(45121960-45122014)
chr8 (280-335)||(5420705-5420760)
chr8 (287-334)||(5915928-5915975)
chr8 (280-335)||(45121705-45121760)
chr8 (280-334)||(3038340-3038394)
chr8 (280-334)||(9483237-9483291)
chr8 (280-334)||(20870623-20870677)
chr8 (280-334)||(30441139-30441193)
chr8 (280-334)||(45122678-45122732)
chr8 (280-335)||(25561864-25561920)
chr8 (280-335)||(8918813-8918868)
chr8 (280-335)||(40518636-40518691)
chr8 (277-331)||(9309030-9309084)
chr8 (280-334)||(9309409-9309463)
chr8 (280-334)||(30359325-30359379)
chr8 (280-334)||(30359663-30359717)
chr8 (280-334)||(40518125-40518179)
chr8 (280-334)||(40579556-40579610)
chr8 (280-334)||(45122107-45122161)
chr8 (297-334)||(6651565-6651602)
chr8 (44-73)||(30585122-30585151)
chr8 (51-88)||(41953172-41953209)
chr8 (281-325)||(11970297-11970341)
chr8 (280-334)||(18372656-18372707)
[»] chr3 (39 HSPs)
chr3 (280-334)||(37990689-37990743)
chr3 (280-334)||(42342140-42342194)
chr3 (280-332)||(21832395-21832447)
chr3 (280-335)||(15773246-15773301)
chr3 (280-334)||(22304623-22304677)
chr3 (280-334)||(43346841-43346895)
chr3 (280-332)||(32589757-32589809)
chr3 (280-335)||(39935004-39935059)
chr3 (279-334)||(45395703-45395758)
chr3 (280-334)||(4823709-4823763)
chr3 (280-334)||(12114612-12114666)
chr3 (280-334)||(15772908-15772962)
chr3 (284-334)||(22303709-22303759)
chr3 (281-335)||(25739474-25739528)
chr3 (280-334)||(29644952-29645006)
chr3 (280-334)||(32462950-32463004)
chr3 (280-334)||(37991027-37991081)
chr3 (280-334)||(41359815-41359869)
chr3 (280-334)||(52634994-52635048)
chr3 (280-334)||(54017866-54017920)
chr3 (280-332)||(1634366-1634418)
chr3 (275-334)||(8327953-8328012)
chr3 (280-335)||(42342437-42342492)
chr3 (280-335)||(46546374-46546429)
chr3 (280-335)||(52634730-52634784)
chr3 (280-334)||(22304005-22304059)
chr3 (280-334)||(29644631-29644685)
chr3 (280-334)||(35946576-35946630)
chr3 (296-334)||(39336020-39336058)
chr3 (280-334)||(45901768-45901822)
chr3 (280-334)||(54018248-54018302)
chr3 (280-333)||(3384317-3384370)
chr3 (281-334)||(33803302-33803355)
chr3 (280-333)||(39336280-39336333)
chr3 (281-334)||(47964568-47964621)
chr3 (280-333)||(53118026-53118078)
chr3 (297-334)||(54017598-54017635)
chr3 (297-333)||(16871010-16871046)
chr3 (298-334)||(33175711-33175747)
[»] chr7 (30 HSPs)
chr7 (280-335)||(45434690-45434745)
chr7 (280-334)||(30244324-30244378)
chr7 (280-334)||(1085666-1085720)
chr7 (280-334)||(6054614-6054668)
chr7 (280-334)||(7517634-7517688)
chr7 (280-334)||(7554079-7554133)
chr7 (280-334)||(19122785-19122839)
chr7 (280-334)||(22566712-22566766)
chr7 (280-334)||(22567089-22567143)
chr7 (280-334)||(30245131-30245185)
chr7 (280-334)||(30253546-30253600)
chr7 (282-334)||(1085298-1085350)
chr7 (280-327)||(37533067-37533114)
chr7 (280-334)||(23427-23481)
chr7 (280-334)||(34218084-34218138)
chr7 (280-334)||(37533414-37533468)
chr7 (44-78)||(43434523-43434557)
chr7 (280-334)||(45754769-45754823)
chr7 (289-334)||(9901706-9901751)
chr7 (282-334)||(118351-118403)
chr7 (280-332)||(16569250-16569302)
chr7 (280-332)||(16596360-16596412)
chr7 (280-335)||(30032621-30032676)
chr7 (280-334)||(11845245-11845299)
chr7 (297-335)||(23569051-23569089)
chr7 (280-334)||(29157619-29157673)
chr7 (280-334)||(36939783-36939837)
chr7 (280-334)||(40094824-40094878)
chr7 (280-334)||(45433295-45433349)
chr7 (280-335)||(24838750-24838806)
[»] chr6 (31 HSPs)
chr6 (280-335)||(32460629-32460684)
chr6 (280-334)||(3409313-3409367)
chr6 (280-334)||(6999846-6999900)
chr6 (280-334)||(10074413-10074467)
chr6 (280-334)||(16107732-16107786)
chr6 (280-334)||(593759-593813)
chr6 (280-334)||(1127414-1127468)
chr6 (280-334)||(2377808-2377862)
chr6 (280-334)||(2578885-2578939)
chr6 (280-334)||(3058280-3058334)
chr6 (280-334)||(10073666-10073720)
chr6 (279-335)||(26544102-26544158)
chr6 (280-334)||(2843608-2843663)
chr6 (280-335)||(10911620-10911675)
chr6 (280-334)||(2578493-2578547)
chr6 (280-334)||(2579922-2579976)
chr6 (280-334)||(10074041-10074095)
chr6 (280-334)||(12092532-12092586)
chr6 (280-334)||(14748388-14748442)
chr6 (280-334)||(29518557-29518611)
chr6 (280-334)||(29518974-29519028)
chr6 (280-334)||(32741233-32741287)
chr6 (280-334)||(35210258-35210312)
chr6 (281-334)||(3415513-3415566)
chr6 (280-327)||(2579549-2579596)
chr6 (296-334)||(8481996-8482034)
chr6 (280-334)||(9062400-9062453)
chr6 (280-334)||(16454629-16454683)
chr6 (280-334)||(16454961-16455015)
chr6 (46-78)||(1960345-1960377)
chr6 (45-73)||(34406440-34406468)
[»] chr2 (30 HSPs)
chr2 (280-334)||(6421439-6421493)
chr2 (280-334)||(28254287-28254341)
chr2 (280-334)||(14745717-14745771)
chr2 (280-334)||(15880317-15880371)
chr2 (280-334)||(36005930-36005984)
chr2 (280-334)||(36178655-36178709)
chr2 (280-334)||(41283525-41283579)
chr2 (287-335)||(31468799-31468847)
chr2 (280-335)||(3673122-3673177)
chr2 (280-335)||(29873586-29873641)
chr2 (280-335)||(33561500-33561555)
chr2 (280-331)||(33731702-33731753)
chr2 (280-334)||(5543048-5543102)
chr2 (280-334)||(28531364-28531418)
chr2 (280-334)||(37105978-37106032)
chr2 (280-334)||(37106242-37106296)
chr2 (280-333)||(36178320-36178373)
chr2 (298-334)||(30323536-30323572)
chr2 (283-334)||(14745344-14745395)
chr2 (279-334)||(15511545-15511600)
chr2 (280-331)||(38796673-38796724)
chr2 (280-334)||(962652-962706)
chr2 (280-334)||(5542675-5542729)
chr2 (280-334)||(30313231-30313285)
chr2 (280-334)||(42514703-42514757)
chr2 (280-329)||(7598282-7598331)
chr2 (297-330)||(35580494-35580527)
chr2 (297-334)||(37895111-37895148)
chr2 (281-321)||(12529091-12529131)
chr2 (280-332)||(35580776-35580827)
[»] chr5 (23 HSPs)
chr5 (280-335)||(11417026-11417081)
chr5 (280-334)||(18603170-18603224)
chr5 (280-334)||(26074666-26074720)
chr5 (280-334)||(26590960-26591014)
chr5 (281-335)||(32487448-32487502)
chr5 (280-334)||(33747825-33747879)
chr5 (280-334)||(41170688-41170742)
chr5 (280-334)||(6224250-6224304)
chr5 (280-334)||(9498704-9498758)
chr5 (280-334)||(15370153-15370207)
chr5 (280-334)||(25327989-25328043)
chr5 (280-334)||(40296365-40296419)
chr5 (280-327)||(26075219-26075266)
chr5 (280-334)||(299543-299597)
chr5 (280-334)||(6500504-6500558)
chr5 (280-334)||(6500876-6500930)
chr5 (280-334)||(13415810-13415864)
chr5 (280-334)||(15370456-15370510)
chr5 (280-334)||(34753075-34753129)
chr5 (280-334)||(41632836-41632890)
chr5 (284-334)||(42405646-42405696)
chr5 (286-334)||(26074196-26074244)
chr5 (44-72)||(27976386-27976414)
[»] scaffold0702 (1 HSPs)
scaffold0702 (280-334)||(564-618)
[»] chr1 (36 HSPs)
chr1 (280-334)||(3550774-3550828)
chr1 (280-334)||(17294631-17294685)
chr1 (280-334)||(26661572-26661626)
chr1 (280-334)||(32594766-32594820)
chr1 (280-334)||(40082461-40082514)
chr1 (280-334)||(41157045-41157099)
chr1 (280-335)||(11977334-11977389)
chr1 (280-335)||(22077159-22077214)
chr1 (280-335)||(34364561-34364616)
chr1 (280-331)||(44290511-44290562)
chr1 (280-334)||(3875381-3875435)
chr1 (280-334)||(22077545-22077599)
chr1 (280-334)||(24600364-24600418)
chr1 (280-334)||(29798253-29798307)
chr1 (280-334)||(34364979-34365033)
chr1 (280-334)||(41759537-41759591)
chr1 (280-333)||(5320016-5320069)
chr1 (280-333)||(38804406-38804459)
chr1 (280-331)||(66525-66576)
chr1 (275-334)||(1188638-1188697)
chr1 (45-76)||(27723845-27723876)
chr1 (280-335)||(31767210-31767265)
chr1 (280-327)||(44290882-44290929)
chr1 (296-335)||(47380216-47380255)
chr1 (280-334)||(66137-66191)
chr1 (280-334)||(37556166-37556219)
chr1 (280-334)||(41157429-41157483)
chr1 (281-334)||(45494024-45494077)
chr1 (44-88)||(3497235-3497279)
chr1 (280-335)||(9955962-9956018)
chr1 (49-77)||(27737006-27737034)
chr1 (280-332)||(30630690-30630742)
chr1 (44-84)||(40494258-40494298)
chr1 (280-320)||(41184152-41184192)
chr1 (280-332)||(48588540-48588592)
chr1 (44-76)||(50187309-50187341)
[»] scaffold0391 (2 HSPs)
scaffold0391 (280-331)||(1159-1210)
scaffold0391 (280-334)||(1741-1795)
[»] scaffold0078 (2 HSPs)
scaffold0078 (275-334)||(5031-5090)
scaffold0078 (280-334)||(5411-5465)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 23818046 - 23817729
Alignment:
Q  15 gaaattagaattaacacatgtacacacaaaataatttaagaaaatgaaagtgattgaatataataacatgtgtctttttgtattggcattgtatatcaat 114  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23818046 gaaattagaattaacacgtgtacacacaa--taatttaagaaaatgaaagtgattgaatataataacatgtgtcgttttgtattggcattgtatatcaat 23817949  T
Q  115 atgtatcgaacaccttacacaccttagtgtcgcagcatagagcaagactgtatcaaaagaagagtatagttgttttcaaaaggttgagctacttgactaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23817948 atgtatcgaacaccttacacaccttagtgtcgcagcatagagcaagactgtatcaaaagaagagtatagttgttttcaaaaggttgagctacttgactaa 23817849  T
Q  215 aaagttaagctaaaaaagtttggatggattagtaaatgttgttgtgtgcaagtgtgatttatatgttataagtaagaggattcataaactcactgcctta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  23817848 aaagttaagctaaaaaagtttggatggattagtaaatgttgttgtgtgcaagtgtgagttatatgttataagtaagaggattcataaactcattgcctta 23817749  T
Q  315 aggttttgggtaagagtgtg 334  Q
    ||||||||||||||||||||    
T  23817748 aggttttgggtaagagtgtg 23817729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 3340861 - 3340915
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  3340861 ttataagtaagaggacccataaacccactgccttaaggttttgggtaagagtgtg 3340915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 4955419 - 4955365
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  4955419 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagtgtg 4955365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 25483390 - 25483444
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  25483390 ttataagtaagaggatccataaacccattgccttaaggttttgggtaagagtgtg 25483444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 31691206 - 31691260
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  31691206 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagtgtg 31691260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 34646751 - 34646697
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  34646751 ttataactaagaggactcataaactcattgccttaaggttttgggtaagagtgtg 34646697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 36629291 - 36629345
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  36629291 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagtgtg 36629345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 15841467 - 15841415
Alignment:
Q  283 taagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  15841467 taagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtga 15841415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 16889638 - 16889587
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 331  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  16889638 ttataagtaagaggattcataaacctactgccttaaagttttgggtaagagt 16889587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 32941225 - 32941170
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  32941225 ttataaataagagggctcataaactcattgccttaaggttttgggtaagagtgtga 32941170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 39404072 - 39404126
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||||||  || |||||||||||||||||||||||    
T  39404072 ttataagtaagaggactcataaactcatagcattaaggttttgggtaagagtgtg 39404126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 49880214 - 49880264
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagag 330  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  49880214 ttataagtaagaggacccataaacccactgccttaaggttttgggtaagag 49880264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 50630857 - 50630803
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  50630857 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 50630803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 54017697 - 54017642
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  ||||||| || |||||||||||||| |||||||||||||    
T  54017697 ttataagtaagaggacccataaacccattgccttaaggttttaggtaagagtgtga 54017642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 54936253 - 54936304
Alignment:
Q  283 taagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  54936253 taagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 54936304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 23826956 - 23826898
Alignment:
Q  192 aaaaggttgagctacttgactaaaaagttaagctaaaaaagtttggatggattagtaaa 250  Q
    |||| ||||||| ||| ||||||||  |||||||| |||||||||||||||||||||||    
T  23826956 aaaaagttgagcaactagactaaaagcttaagctataaaagtttggatggattagtaaa 23826898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 39792962 - 39792908
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||| |||||||  | |||||||| |||||||||||||||||||||||||||    
T  39792962 ttataagaaagaggaaccgtaaactcattgccttaaggttttgggtaagagtgtg 39792908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 44621056 - 44621110
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||   |||||||||| || ||||||||||||||||||||||||    
T  44621056 ttataagtaagagggcacataaactcattgtcttaaggttttgggtaagagtgtg 44621110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 45496859 - 45496913
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||   ||||||||| || ||||||||||||||||||||||||    
T  45496859 ttataagtaagaggacctataaactcattgtcttaaggttttgggtaagagtgtg 45496913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 49302964 - 49303014
Alignment:
Q  284 aagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  49302964 aagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 49303014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 55933226 - 55933172
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||| ||||||||||||||||||    
T  55933226 ttataagtaagaggacccataaacccattgccttaaagttttgggtaagagtgtg 55933172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 41370411 - 41370464
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgt 333  Q
    |||||||||||||||  ||||||| || |||||||| |||||||||||||||||    
T  41370411 ttataagtaagaggacccataaacccattgccttaaagttttgggtaagagtgt 41370464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 36608761 - 36608709
Alignment:
Q  282 ataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||| ||||||  || || ||||||||||||||||||||||||    
T  36608761 ataagtaagaggatccataaatccattgtcttaaggttttgggtaagagtgtg 36608709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 52884941 - 52884985
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttggg 324  Q
    |||||||||||||||| ||||||| || |||||||||||||||||    
T  52884941 ttataagtaagaggatccataaacccattgccttaaggttttggg 52884985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 51768162 - 51768115
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 327  Q
    |||||| |||||||| ||||||||||| || |||||||||||||||||    
T  51768162 ttataaataagaggactcataaactcattgtcttaaggttttgggtaa 51768115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 1731749 - 1731695
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| ||||||||  |||||||  | |||||||||||||||||||||||||||    
T  1731749 ttataaataagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 1731695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 2741125 - 2741179
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||   || |||||||||||||||||||||||||||    
T  2741125 ttataagtaagaggacccataactccattgccttaaggttttgggtaagagtgtg 2741179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 3244553 - 3244499
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| || ||||| ||||||||||||| ||||    
T  3244553 ttataagtaagaggacccataaactcattgtcttaaagttttgggtaagaatgtg 3244499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 3271841 - 3271895
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||| |  |||||||  | |||||||||||||||||||||||||||    
T  3271841 ttataagtaagagaacccataaacctattgccttaaggttttgggtaagagtgtg 3271895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 10245974 - 10246027
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||  ||||||||||||||||||||||||||    
T  10245974 ttataagtaagaggac-cataaacccaaagccttaaggttttgggtaagagtgtg 10246027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 11706641 - 11706592
Alignment:
Q  284 aagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||| | ||||||||| ||| |||||||||||||||||||||||    
T  11706641 aagtaagaggact-ataaactcattgctttaaggttttgggtaagagtgtg 11706592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 18932851 - 18932797
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| ||||||||  ||||||| || |||||||||||||| ||||||||||||    
T  18932851 ttataaataagaggacccataaacccattgccttaaggttttaggtaagagtgtg 18932797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22028063 - 22028009
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||  | |||||||||||||||||||||| ||||    
T  22028063 ttataagtaagaggacccataaacatattgccttaaggttttgggtaagaatgtg 22028009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22028471 - 22028417
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||| ||||||||||  |||||||||| || ||||| ||||||||||||||||||    
T  22028471 ttattagtaagaggacccataaactcattgtcttaatgttttgggtaagagtgtg 22028417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22183366 - 22183312
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||| ||||  ||||||| || |||||||||||||||| ||||||||||    
T  22183366 ttataagtaaaaggacccataaacccattgccttaaggttttggataagagtgtg 22183312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 44620424 - 44620462
Alignment:
Q  297 cataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  44620424 cataaacccattgccttaaggttttgggtaagagtgtga 44620462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 54108967 - 54109020
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||| ||||||||||||||||||    
T  54108967 ttataagtaagaggacccataaacccattgccttaa-gttttgggtaagagtgtg 54109020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 19388933 - 19388966
Alignment:
Q  45 ataatttaagaaaatgaaagtgattgaatataat 78  Q
    |||||||||| |||||||||||||||||||||||    
T  19388933 ataatttaaggaaatgaaagtgattgaatataat 19388966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 3669741 - 3669795
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  3669741 ttataagtaagaggactcataaactcattgccttaaggttttgggtaagagtgtg 3669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 18372098 - 18372044
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  18372098 ttataagtaagaggatccataaactcattgctttaaggttttgggtaagagtgtg 18372044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 34834930 - 34834984
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  34834930 ttataagtaagatgactcataaactcattgccttaaggttttgggtaagagtgtg 34834984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 70378 - 70323
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||    
T  70378 ttataagtaagaggacccataaacccactgccttaaggttttaggtaagagtgtga 70323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 9507836 - 9507890
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || | |||||||||||||||||||||||||    
T  9507836 ttataagtaagaggactcataaacccattaccttaaggttttgggtaagagtgtg 9507890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 33113471 - 33113417
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| ||||||||| |||||||||||||||||    
T  33113471 ttataagtaagaggacccataaactcattgccttaagattttgggtaagagtgtg 33113417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 34835263 - 34835317
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||| ||||||||||||||||||    
T  34835263 ttataagtaagaggacccataaactcattgccttaaagttttgggtaagagtgtg 34835317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 34835529 - 34835583
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||| ||||||||||||||||||    
T  34835529 ttataagtaagaggacccataaactcattgccttaaagttttgggtaagagtgtg 34835583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 34835795 - 34835849
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||| ||||||||||||||||||    
T  34835795 ttataagtaagaggacccataaactcattgccttaaagttttgggtaagagtgtg 34835849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 45122014 - 45121960
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||    
T  45122014 ttataagtaagaggactcataaactcattgccttaagattttgggtaacagtgtg 45121960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 5420705 - 5420760
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||||| |||||||| || ||||||||||||||  ||||||||||||    
T  5420705 ttataagtaagaggactcataaacccattgccttaaggttttttgtaagagtgtga 5420760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 5915928 - 5915975
Alignment:
Q  287 taagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||||    
T  5915928 taagaggacccataaactcattgccttaaggttttgggtaagagtgtg 5915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 45121760 - 45121705
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||| |||||||  || |||||||||||||| ||||||||||||    
T  45121760 ttataagtaagaggatccataaacctacagccttaaggttttgagtaagagtgtga 45121705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 3038394 - 3038340
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||| ||||  ||||||| || |||||||||||||||||||||||||||    
T  3038394 ttataagtaaaaggacccataaacccattgccttaaggttttgggtaagagtgtg 3038340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 9483291 - 9483237
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || || ||||||||||||||||||||||||    
T  9483291 ttataagtaagaggacccataaacccattgtcttaaggttttgggtaagagtgtg 9483237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 20870677 - 20870623
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| |||||||||||| |||||| ||||||||||    
T  20870677 ttataagtaagaggacccataaacccactgccttaagattttggataagagtgtg 20870623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30441139 - 30441193
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||   ||||||| || |||||||||||||||||||||||||||    
T  30441139 ttataagtaagagggcccataaacccattgccttaaggttttgggtaagagtgtg 30441193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 45122678 - 45122732
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| || |||||||||||||||| |||||||    
T  45122678 ttataagtaagaggacccataaactcattgtcttaaggttttgggtatgagtgtg 45122732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 25561920 - 25561864
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggtttt-gggtaagagtgtga 335  Q
    |||||||||||||||  |||||||||| || ||||||||||| ||||||||||||||    
T  25561920 ttataagtaagaggacccataaactcattgtcttaaggttttggggtaagagtgtga 25561864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 8918868 - 8918813
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  |||||||  | || |||||||||||||||||||||||||    
T  8918868 ttataagtaagaggacccataaacctattgacttaaggttttgggtaagagtgtga 8918813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 40518636 - 40518691
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||| ||||||||  ||||||| || || |||||||||||||||||||||||||    
T  40518636 ttataaataagaggacccataaacccaatgacttaaggttttgggtaagagtgtga 40518691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 9309030 - 9309084
Alignment:
Q  277 atgttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 331  Q
    ||||||||||||||||||  ||||||| || ||||| ||||||||||| ||||||    
T  9309030 atgttataagtaagaggacccataaacccattgcctaaaggttttgggcaagagt 9309084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 9309409 - 9309463
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  | |||||||| ||||||||||| | |||||||||||||    
T  9309409 ttataagtaagaggacccttaaactcattgccttaaggtgtcgggtaagagtgtg 9309463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30359325 - 30359379
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||| |||||||  ||||||| ||  ||||||||||||||||||||||||||    
T  30359325 ttataagcaagaggacccataaacccatagccttaaggttttgggtaagagtgtg 30359379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30359663 - 30359717
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| ||   ||||||| |||||||||||||||||    
T  30359663 ttataagtaagaggactcataaacccataaccttaagattttgggtaagagtgtg 30359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 40518125 - 40518179
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||  |||  ||||||| || |||||||||||||||||||||||||||    
T  40518125 ttataagtaaatggacccataaacccaatgccttaaggttttgggtaagagtgtg 40518179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 40579610 - 40579556
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||| | ||| |||||||||| ||||||||||||    
T  40579610 ttataagtaagaggacccataaacttattgctttaaggttttaggtaagagtgtg 40579556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 45122161 - 45122107
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||| |  |||||||||| |  ||||||||||||||||||||||||    
T  45122161 ttataagtaagagaacccataaactcattttcttaaggttttgggtaagagtgtg 45122107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 6651565 - 6651602
Alignment:
Q  297 cataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  6651565 cataaattcattgccttaaggttttgggtaagagtgtg 6651602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 30585151 - 30585122
Alignment:
Q  44 aataatttaagaaaatgaaagtgattgaat 73  Q
    ||||||||||||||||||||||||||||||    
T  30585151 aataatttaagaaaatgaaagtgattgaat 30585122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 41953209 - 41953172
Alignment:
Q  51 taagaaaatgaaagtgattgaatataataacatgtgtc 88  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  41953209 taagaaaatgaaagtgattgaatgtaatcacatgtgtc 41953172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 11970297 - 11970341
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggttttgggt 325  Q
    ||||||||||| |||||||||||||| |||||| || ||||||||    
T  11970297 tataagtaagatgattcataaactcaatgcctttagattttgggt 11970341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 18372707 - 18372656
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || ||||   ||||||||||||||||||||    
T  18372707 ttataagtaagaggactcataaacccattgcc---aggttttgggtaagagtgtg 18372656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 37990743 - 37990689
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  37990743 ttataagtaagaggactcataaactcattgccttaaggttttgggtaagagtgtg 37990689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 42342194 - 42342140
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  42342194 ttataagtaagaggactcataaactcattgccttaaggttttgggtaagagtgtg 42342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 21832447 - 21832395
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    ||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  21832447 ttataagtaagaggactcataaactcatagccttaaggttttgggtaagagtg 21832395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 15773246 - 15773301
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||||| |||||| |||| |||||||| |||||||||||||||||||    
T  15773246 ttataagtaagaggactcataagctcattgccttaaagttttgggtaagagtgtga 15773301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 22304623 - 22304677
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  22304623 ttataagtaagaggacccataaacacattgccttaaggttttgggtaagagtgtg 22304677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 43346895 - 43346841
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||| |  |||||||||| |||||||||||||||||||||||||||    
T  43346895 ttataagtaagagaacccataaactcattgccttaaggttttgggtaagagtgtg 43346841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 32589757 - 32589809
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||    
T  32589757 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtg 32589809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 39935059 - 39935004
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||| ||||||| || |||||||| |||||| ||||||||||||    
T  39935059 ttataagtaagaggatccataaacccattgccttaaagttttgagtaagagtgtga 39935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 45395758 - 45395703
Alignment:
Q  279 gttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||||| ||||||| || || ||||| ||||||||||||||||||    
T  45395758 gttataagtaagaggatccataaacccattgtcttaatgttttgggtaagagtgtg 45395703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 4823709 - 4823763
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||| |||||  |||||||||| ||||||||| |||||||||||||||||    
T  4823709 ttataagtaggaggacccataaactcattgccttaagattttgggtaagagtgtg 4823763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 12114666 - 12114612
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || || ||||||||||||||||||||||||    
T  12114666 ttataagtaagaggacccataaacccattgtcttaaggttttgggtaagagtgtg 12114612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 15772908 - 15772962
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| ||| |||||||||||| ||||||||||    
T  15772908 ttataagtaagaggacccataaactcattgctttaaggttttggataagagtgtg 15772962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 22303759 - 22303709
Alignment:
Q  284 aagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  22303759 aagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 22303709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 25739528 - 25739474
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||||  |||||||||| ||| || |||||||||||||||||||||    
T  25739528 tataagtaagaggacccataaactcattgcttttaggttttgggtaagagtgtga 25739474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 29645006 - 29644952
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || || ||||||||||||||||||||||||    
T  29645006 ttataagtaagaggacccataaacccattgtcttaaggttttgggtaagagtgtg 29644952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 32463004 - 32462950
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| || |||||||| || ||||||||||||||| |||||||||||    
T  32463004 ttataagtaagaagactcataaacccattgccttaaggttttgagtaagagtgtg 32462950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 37991081 - 37991027
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||   |||||||||  ||||||||||||||||||||||||||    
T  37991081 ttataagtaagaggacctataaactcatcgccttaaggttttgggtaagagtgtg 37991027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 41359869 - 41359815
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||| ||||    
T  41359869 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagaatgtg 41359815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 52634994 - 52635048
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| ||||||||  |||||||||| ||||||||| |||||||||||||||||    
T  52634994 ttataaataagaggacccataaactcattgccttaagattttgggtaagagtgtg 52635048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 54017920 - 54017866
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||  |  ||||||||||||||||||||||||||    
T  54017920 ttataagtaagaggactcataaacctaacgccttaaggttttgggtaagagtgtg 54017866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 1634418 - 1634366
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    |||||||||||||||  ||||||| || || ||||||||||||||||||||||    
T  1634418 ttataagtaagaggacccataaacccattggcttaaggttttgggtaagagtg 1634366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 8327953 - 8328012
Alignment:
Q  275 atatgttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||| ||||||||||||| |  |||||||  | |||||||||||||||||||||||||||    
T  8327953 atatcttataagtaagagaacccataaacgtaatgccttaaggttttgggtaagagtgtg 8328012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 42342492 - 42342437
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  ||||||  || || |||||||||||||||||||||||||    
T  42342492 ttataagtaagaggacccataaatccattgtcttaaggttttgggtaagagtgtga 42342437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 46546429 - 46546374
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||| |||| || ||||||| || ||||||||||||||| ||||||||||||    
T  46546429 ttataagttagagaatccataaacccattgccttaaggttttgtgtaagagtgtga 46546374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 52634730 - 52634784
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||| |  ||||||| || ||||||||||||||||||||||||||||    
T  52634730 ttataagtaagag-acccataaacccattgccttaaggttttgggtaagagtgtga 52634784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22304059 - 22304005
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||| |||  ||||||| || |||||||||||||||| ||||||||||    
T  22304059 ttataagtaagcggacccataaacccattgccttaaggttttggataagagtgtg 22304005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 29644685 - 29644631
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||| |  ||||||| || || ||||||||||||||||||||||||    
T  29644685 ttataagtaagagaacccataaacccattgtcttaaggttttgggtaagagtgtg 29644631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 35946576 - 35946630
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| |  |||||||||||||||||||| ||||||    
T  35946576 ttataagtaagaggacccataaacccgttgccttaaggttttgggtaaaagtgtg 35946630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 39336058 - 39336020
Alignment:
Q  296 tcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  39336058 tcataaaatcattgccttaaggttttgggtaagagtgtg 39336020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 45901768 - 45901822
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||||||  ||||||| ||||| ||||||||||||    
T  45901768 ttataagtaagaggacgcataaactcatggccttaaagtttttggtaagagtgtg 45901822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 54018302 - 54018248
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||  |  ||||||||||||||||||||||||||    
T  54018302 ttataagtaagaggacccataaacctaacgccttaaggttttgggtaagagtgtg 54018248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 3384370 - 3384317
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgt 333  Q
    ||||||| |||||||  |||||||| | |||||||| |||||||||||||||||    
T  3384370 ttataaggaagaggacccataaacttaatgccttaaagttttgggtaagagtgt 3384317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 33803355 - 33803302
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||  ||||||| || ||| ||||||| |||||||||||||||    
T  33803355 tataagtaagaggacccataaacccattgcattaaggtattgggtaagagtgtg 33803302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 39336333 - 39336280
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgt 333  Q
    |||||||| ||||||| |||||||||| ||| |||||||||||| ||| |||||    
T  39336333 ttataagtgagaggatccataaactcattgctttaaggttttggataatagtgt 39336280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 47964621 - 47964568
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||| ||||||  |||||||  | |||||||||||||||||||||||||||    
T  47964621 tataagtgagaggacccataaacctattgccttaaggttttgggtaagagtgtg 47964568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 53118078 - 53118026
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgt 333  Q
    |||||||| |||||||||| |||| || ||||||||| ||||||||||||||||    
T  53118078 ttataagtgagaggattca-aaacccattgccttaagattttgggtaagagtgt 53118026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 54017635 - 54017598
Alignment:
Q  297 cataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||| || |||||||||||||||||||||||||||    
T  54017635 cataaacccattgccttaaggttttgggtaagagtgtg 54017598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 16871046 - 16871010
Alignment:
Q  297 cataaactcactgccttaaggttttgggtaagagtgt 333  Q
    |||||||||| |||||||||||||| |||||||||||    
T  16871046 cataaactcattgccttaaggttttaggtaagagtgt 16871010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 33175747 - 33175711
Alignment:
Q  298 ataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||  ||||||||||||||||||||||||||    
T  33175747 ataaactcatagccttaaggttttgggtaagagtgtg 33175711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 45434690 - 45434745
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  45434690 ttataagtaagaggacccataaacttactgccttaaggttttgggtaagagtgtga 45434745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30244324 - 30244378
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  30244324 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagtgtg 30244378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 1085720 - 1085666
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  1085720 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 1085666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 6054614 - 6054668
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  6054614 ttataagtaagaggacccataaacacattgccttaaggttttgggtaagagtgtg 6054668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 7517634 - 7517688
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  7517634 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 7517688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 7554079 - 7554133
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  7554079 ttataagtaagaggatccataaacccatagccttaaggttttgggtaagagtgtg 7554133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 19122785 - 19122839
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||||||||    
T  19122785 ttataagtaagaggactcataaatccattgccttaaggttttgggtaagagtgtg 19122839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22566766 - 22566712
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  22566766 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 22566712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22567143 - 22567089
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  22567143 ttataagtaagaggacccataaactcattgccttaaggtttttggtaagagtgtg 22567089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30245131 - 30245185
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| ||  |||||||||| |||||||||||||||||||||||||||    
T  30245131 ttataagtaagacgacccataaactcattgccttaaggttttgggtaagagtgtg 30245185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30253546 - 30253600
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||| |  |||||||||| |||||||||||||||||||||||||||    
T  30253546 ttataagtaagagaacccataaactcattgccttaaggttttgggtaagagtgtg 30253600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 1085350 - 1085298
Alignment:
Q  282 ataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||| |  |||||||||| |||||||||||||||||||||||||||    
T  1085350 ataagtaagagaacccataaactcattgccttaaggttttgggtaagagtgtg 1085298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 37533114 - 37533067
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 327  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||    
T  37533114 ttataagtaagaggacccataaactcattgccttaaggttttgggtaa 37533067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 23481 - 23427
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||  | |||||||||||||||||||||||||||    
T  23481 ttataagtaagaggacccataaacctattgccttaaggttttgggtaagagtgtg 23427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 34218138 - 34218084
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||| |||||| |||||||| || || ||||||||||||||||||||||||    
T  34218138 ttataagtgagaggactcataaacccattgtcttaaggttttgggtaagagtgtg 34218084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 37533468 - 37533414
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||  || |||||||||||||||||||||||||||    
T  37533468 ttataagtaagaggacccataaatccattgccttaaggttttgggtaagagtgtg 37533414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 43434523 - 43434557
Alignment:
Q  44 aataatttaagaaaatgaaagtgattgaatataat 78  Q
    |||||||||||||||||||||||||||||||||||    
T  43434523 aataatttaagaaaatgaaagtgattgaatataat 43434557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 45754769 - 45754823
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| || |||||||| ||  ||||||||||||||||||||||||||    
T  45754769 ttataagtaagatgactcataaacccatagccttaaggttttgggtaagagtgtg 45754823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 9901706 - 9901751
Alignment:
Q  289 agaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||    
T  9901706 agaggatccataaactcattgtcttaaggttttgggtaagagtgtg 9901751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 118403 - 118351
Alignment:
Q  282 ataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||| ||||||| || | || ||||||||||||||||||||||    
T  118403 ataagtaagaggatccataaacccattaccgtaaggttttgggtaagagtgtg 118351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 16569250 - 16569302
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    |||||||||||||||  ||||||| || |||||||||||||| ||||||||||    
T  16569250 ttataagtaagaggacccataaacccattgccttaaggtttttggtaagagtg 16569302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 16596412 - 16596360
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    |||||||||||||||  ||||||| || |||||||||||||| ||||||||||    
T  16596412 ttataagtaagaggacccataaacccattgccttaaggtttttggtaagagtg 16596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 30032621 - 30032676
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||| || |||||||  |  |||||||||||||||||||||||||||    
T  30032621 ttataagtaagagtatccataaacctatagccttaaggttttgggtaagagtgtga 30032676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 11845245 - 11845299
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||  || |||||||||||||||| ||||||||||    
T  11845245 ttataagtaagaggacccataaatccattgccttaaggttttggataagagtgtg 11845299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 23569089 - 23569051
Alignment:
Q  297 cataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  23569089 cataaacccattgccttaaggttttgggtaagagtgtga 23569051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 29157619 - 29157673
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| ||  ||||||  || |||||||||||||||||||||||||||    
T  29157619 ttataagtaagacgacccataaatccattgccttaaggttttgggtaagagtgtg 29157673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 36939837 - 36939783
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||  || |||||||||||||||||||| ||||||    
T  36939837 ttataagtaagaggacccataaatccattgccttaaggttttgggtaaaagtgtg 36939783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 40094878 - 40094824
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||  | ||||||||||||||||||||||||    
T  40094878 ttataagtaagaggacccataaacccatcgtcttaaggttttgggtaagagtgtg 40094824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 45433295 - 45433349
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||| | ||||||||  | ||||||||| |||||||||||||||||    
T  45433295 ttataagtaagagaactcataaacctattgccttaagattttgggtaagagtgtg 45433349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 24838806 - 24838750
Alignment:
Q  280 ttataagtaaga-ggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||| |||| ||||||| |  || |||||||||||||||||||||||||    
T  24838806 ttataagtaagaaggatccataaacccgttgtcttaaggttttgggtaagagtgtga 24838750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 32460684 - 32460629
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  32460684 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagtgtga 32460629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 3409313 - 3409367
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  3409313 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagtgtg 3409367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 6999900 - 6999846
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  6999900 ttatatgtaagaggatccataaactcactgccttaaggttttggataagagtgtg 6999846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 10074467 - 10074413
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  10074467 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagtgtg 10074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 16107732 - 16107786
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  16107732 ttataagtaagaggactcataaacccattgccttaaggttttgggtaagagtgtg 16107786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 593813 - 593759
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||| ||||||    
T  593813 ttataagtaagaggactcataaaccgactgccttaaggttttgggtaatagtgtg 593759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 1127414 - 1127468
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || | |||||||||||||||||||||||||    
T  1127414 ttataagtaagaggactcataaacccattaccttaaggttttgggtaagagtgtg 1127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 2377808 - 2377862
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  2377808 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 2377862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 2578939 - 2578885
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| ||||||||| |||||||||| | |||||||||||||||||||||||||    
T  2578939 ttataaataagaggatccataaactcattaccttaaggttttgggtaagagtgtg 2578885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 3058280 - 3058334
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||| |||||| ||||||| || |||||||||||||||||||||||||||    
T  3058280 ttataagtatgaggatccataaacccattgccttaaggttttgggtaagagtgtg 3058334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 10073720 - 10073666
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| |||||||||| || |||||| |||||||||||||||||    
T  10073720 ttataagtaagaggatccataaactcattggcttaagattttgggtaagagtgtg 10073666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 26544102 - 26544158
Alignment:
Q  279 gttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||||||  ||||||| ||| |||||||||||||| ||||||||||||    
T  26544102 gttataagtaagaggacccataaacccaccgccttaaggttttgagtaagagtgtga 26544158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 2843608 - 2843663
Alignment:
Q  280 ttataagtaagaggattc-ataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  | ||||||||| |||||||||||||||||||||||||||    
T  2843608 ttataagtaagaggaccccataaactcattgccttaaggttttgggtaagagtgtg 2843663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 10911620 - 10911675
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||  |||||||||||    
T  10911620 ttataagtaagaggactcataaactcattgccttaaagttttgaataagagtgtga 10911675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 2578547 - 2578493
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||  ||||||||||||||||||||||||||    
T  2578547 ttataagtaagaggacccataaacccatagccttaaggttttgggtaagagtgtg 2578493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 2579976 - 2579922
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||| ||||||||||||||||||||| ||||    
T  2579976 ttataagtaagaggacccataaacccacagccttaaggttttgggtaagaatgtg 2579922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 10074095 - 10074041
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||| ||||||    
T  10074095 ttataagtaagaggacccataaacccattgccttaaggttttgggtaaaagtgtg 10074041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 12092586 - 12092532
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||    
T  12092586 ttataagtgagaggatccataaactcattgccttaaggttttgagtaagactgtg 12092532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 14748442 - 14748388
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| ||||||||  |||||||||| ||| |||||||||||||||||||||||    
T  14748442 ttataaataagaggacccataaactcattgcgttaaggttttgggtaagagtgtg 14748388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 29518557 - 29518611
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || | |||||||||||||||||||||||||    
T  29518557 ttataagtaagaggacccataaacccattaccttaaggttttgggtaagagtgtg 29518611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 29518974 - 29519028
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || | |||||||||||||||||||||||||    
T  29518974 ttataagtaagaggacccataaacccattaccttaaggttttgggtaagagtgtg 29519028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 32741233 - 32741287
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || | |||||||||||||||||||||||||    
T  32741233 ttataagtaagaggacccataaacccattaccttaaggttttgggtaagagtgtg 32741287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 35210258 - 35210312
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||  || |||||||||||||||||||||||||||    
T  35210258 ttataagtaagaggacccataaaaccattgccttaaggttttgggtaagagtgtg 35210312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 3415513 - 3415566
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||  ||||||| || |||||||||||||| ||||||||||||    
T  3415513 tataagtaagaggacccataaacccattgccttaaggtttttggtaagagtgtg 3415566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 2579596 - 2579549
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 327  Q
    ||||||||||||||   |||||||||| ||||||||||||||||||||    
T  2579596 ttataagtaagagggcccataaactcattgccttaaggttttgggtaa 2579549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 8481996 - 8482034
Alignment:
Q  296 tcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  8481996 tcataaactcattgccttaagattttgggtaagagtgtg 8482034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 9062453 - 9062400
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||    
T  9062453 ttataagtaagaggactcataaactcattgtcttaa-gttttgggtaaaagtgtg 9062400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 16454629 - 16454683
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || ||||||||| |||||| ||||||||||    
T  16454629 ttataagtaagaggacccataaacccattgccttaagattttggataagagtgtg 16454683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 16454961 - 16455015
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||| ||||  |||||||  | |||||||||||||||||||||||||||    
T  16454961 ttataagtaataggacccataaacctattgccttaaggttttgggtaagagtgtg 16455015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 1960377 - 1960345
Alignment:
Q  46 taatttaagaaaatgaaagtgattgaatataat 78  Q
    |||||||||||||||||||||||||||| ||||    
T  1960377 taatttaagaaaatgaaagtgattgaatgtaat 1960345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 34406440 - 34406468
Alignment:
Q  45 ataatttaagaaaatgaaagtgattgaat 73  Q
    |||||||||||||||||||||||||||||    
T  34406440 ataatttaagaaaatgaaagtgattgaat 34406468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 6421439 - 6421493
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  6421439 ttataagtaagaggactcataaactcattgccttgaggttttgggtaagagtgtg 6421493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 28254341 - 28254287
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  28254341 ttataagtaagaggacccataaactcattgccttaaggttttgggtaagagtgtg 28254287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 14745771 - 14745717
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  14745771 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 14745717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 15880317 - 15880371
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  15880317 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 15880371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 36005984 - 36005930
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||| ||||||    
T  36005984 ttataagtaagaggacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 36178709 - 36178655
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  36178709 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 36178655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 41283579 - 41283525
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  41283579 ttataagtaagaggacccataaactcattgccttaaggttttaggtaagagtgtg 41283525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 31468847 - 31468799
Alignment:
Q  287 taagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  31468847 taagaggacccataaactcattgccttaaggttttgggtaagagtgtga 31468799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 3673122 - 3673177
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||| |||||||||| ||| ||||| |||||| |||||||||||    
T  3673122 ttataagtaagaggatccataaactcattgctttaagattttggctaagagtgtga 3673177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 29873641 - 29873586
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||  ||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  29873641 ttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtga 29873586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 33561555 - 33561500
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||| ||||||  |||||||||| || |||||||||||||||||||||||||    
T  33561555 ttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtga 33561500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 33731702 - 33731753
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 331  Q
    |||||||||||||||| |||||||  | ||||||||||||||||||||||||    
T  33731702 ttataagtaagaggatccataaacctattgccttaaggttttgggtaagagt 33731753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 5543102 - 5543048
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| |||||||  | ||||||||| |||||||||||||||||    
T  5543102 ttataagtaagaggatccataaacctattgccttaagattttgggtaagagtgtg 5543048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 28531418 - 28531364
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||   |||||||||| ||||||||| |||||||||||||||||    
T  28531418 ttataagtaagaggtcccataaactcattgccttaagattttgggtaagagtgtg 28531364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 37105978 - 37106032
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||| |||  |||||||||| ||||||||| |||||||||||||||||    
T  37105978 ttataagtaaggggacccataaactcattgccttaagattttgggtaagagtgtg 37106032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 37106242 - 37106296
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || | |||||||||||||||||||||||||    
T  37106242 ttataagtaagaggacccataaacccatttccttaaggttttgggtaagagtgtg 37106296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 36178373 - 36178320
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgt 333  Q
    ||||||||||| ||| |||||||| || || |||||||||||||||||||||||    
T  36178373 ttataagtaaggggactcataaacccattgtcttaaggttttgggtaagagtgt 36178320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 30323536 - 30323572
Alignment:
Q  298 ataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||| |||||||||||||||||||||||||||    
T  30323536 ataaactcattgccttaaggttttgggtaagagtgtg 30323572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 14745395 - 14745344
Alignment:
Q  283 taagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| |||||  ||||||| || |||||||||||||||||||||||||||    
T  14745395 taagtatgaggacccataaacccattgccttaaggttttgggtaagagtgtg 14745344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 15511600 - 15511545
Alignment:
Q  279 gttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||||  ||||||| || || |||||| |||||||||||||||||    
T  15511600 gttataagtaagaggacccataaacccattgtcttaagattttgggtaagagtgtg 15511545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 38796724 - 38796673
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 331  Q
    |||||||||||||||  |||||||  | ||||||||||||||||||||||||    
T  38796724 ttataagtaagaggacccataaacctaatgccttaaggttttgggtaagagt 38796673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 962652 - 962706
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||| ||||||  ||||||| || || ||||||||||||||||||||||||    
T  962652 ttataagtgagaggacccataaacccattgtcttaaggttttgggtaagagtgtg 962706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 5542729 - 5542675
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||  | |||||||||||||| ||||||||||||    
T  5542729 ttataagtaagaggacccataaacctattgccttaaggtttttggtaagagtgtg 5542675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30313231 - 30313285
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||| ||||||  || ||||||| ||||||||| |||||||||||||||||    
T  30313231 ttataagtgagaggacccaaaaactcattgccttaagattttgggtaagagtgtg 30313285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 42514703 - 42514757
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||  |||||||| |||||||||||||||||    
T  42514703 ttataagtaagaggacccataaacccatcgccttaagattttgggtaagagtgtg 42514757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 7598282 - 7598331
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaaga 329  Q
    |||||| ||||||||  ||||||||||  |||||||||||||||||||||    
T  7598282 ttataaataagaggacccataaactcatagccttaaggttttgggtaaga 7598331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 35580527 - 35580494
Alignment:
Q  297 cataaactcactgccttaaggttttgggtaagag 330  Q
    |||||||||| |||||||||||||||||||||||    
T  35580527 cataaactcattgccttaaggttttgggtaagag 35580494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 37895148 - 37895111
Alignment:
Q  297 cataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||| || |||||||||||||||||||||||||||    
T  37895148 cataaacccattgccttaaggttttgggtaagagtgtg 37895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 12529131 - 12529091
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggtttt 321  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
T  12529131 tataagtaagaggactcataaactcattgccttaaagtttt 12529091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 35580827 - 35580776
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    |||||||| ||||||  ||||||| || |||||||||||||||||||||||||    
T  35580827 ttataagtgagaggac-cataaacccattgccttaaggttttgggtaagagtg 35580776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 11417081 - 11417026
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||    
T  11417081 ttataagtaagaggatccataaacccattgccttaaggttttgtgtaagagtgtga 11417026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 18603224 - 18603170
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  18603224 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 18603170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 26074666 - 26074720
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  26074666 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 26074720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 26591014 - 26590960
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||    
T  26591014 ttataagtaagaggatccataaattcaatgccttaaggttttgagtaagagtgtg 26590960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 32487448 - 32487502
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||||  ||||||| || ||||||||||||||||||||||||||||    
T  32487448 tataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtga 32487502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 33747825 - 33747879
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| |||||||||| ||||||||| |||||| ||||||||||    
T  33747825 ttataagtaagaggatccataaactcattgccttaagattttggataagagtgtg 33747879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 41170688 - 41170742
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  41170688 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 41170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 6224250 - 6224304
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||||||  ||||||||||||| ||||||||||||    
T  6224250 ttataagtaagaggacccataaactcatcgccttaaggtttttggtaagagtgtg 6224304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 9498758 - 9498704
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || ||||||||| |||||||||||||||||    
T  9498758 ttataagtaagaggacccataaacccattgccttaagattttgggtaagagtgtg 9498704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 15370153 - 15370207
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||  ||| ||||||||||||||||||||||||||    
T  15370153 ttataagtaagaggacccataaatccacagccttaaggttttgggtaagagtgtg 15370207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 25327989 - 25328043
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||  | |||||||||||||||||||||||||||    
T  25327989 ttataagtaagaggacccataaacctaatgccttaaggttttgggtaagagtgtg 25328043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 40296419 - 40296365
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||| ||||||||||||||||||||    
T  40296419 ttataagtaagaggacccataaacccattgccttgaggttttgggtaagagtgtg 40296365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 26075266 - 26075219
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 327  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||    
T  26075266 ttataagtaagaggacccataaacccattgccttaaggttttgggtaa 26075219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 299543 - 299597
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| ||  ||||||||||  |||||||||||||| |||||||||||    
T  299543 ttataagtaagatgacccataaactcatagccttaaggttttgtgtaagagtgtg 299597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 6500504 - 6500558
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||    ||||| || |||||||||||||||||||||||||||    
T  6500504 ttataagtaagaggacctttaaacccattgccttaaggttttgggtaagagtgtg 6500558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 6500876 - 6500930
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| ||| ||||  |||||||||| |||||||||||||||| ||||||||||    
T  6500876 ttataaataaaaggacccataaactcattgccttaaggttttggataagagtgtg 6500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 13415864 - 13415810
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||  | | |||||||||||||||||||||||||    
T  13415864 ttataagtaagaggacccataaacctattaccttaaggttttgggtaagagtgtg 13415810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 15370456 - 15370510
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||  |||||||||||||| |||||||||||    
T  15370456 ttataagtaagaggacccataaacccatagccttaaggttttgcgtaagagtgtg 15370510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 34753129 - 34753075
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| ||  |||||||  | |||||||||||||||||||||||||||    
T  34753129 ttataagtaagaagacccataaaccgattgccttaaggttttgggtaagagtgtg 34753075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 41632836 - 41632890
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || ||| ||||| |||||||||||||||||    
T  41632836 ttataagtaagaggacccataaacccaatgctttaagattttgggtaagagtgtg 41632890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 42405696 - 42405646
Alignment:
Q  284 aagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||| |||| ||||||||  | |||||||||||||||||||||||||||    
T  42405696 aagtaaaaggactcataaacctaatgccttaaggttttgggtaagagtgtg 42405646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 26074244 - 26074196
Alignment:
Q  286 gtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||  ||| ||| || |||||||||||||||||||||||||||    
T  26074244 gtaagaggacccatgaacccattgccttaaggttttgggtaagagtgtg 26074196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 27976386 - 27976414
Alignment:
Q  44 aataatttaagaaaatgaaagtgattgaa 72  Q
    |||||||||||||||||||||||||||||    
T  27976386 aataatttaagaaaatgaaagtgattgaa 27976414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 618 - 564
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  618 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 3550774 - 3550828
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || |||||||| ||||||||||||||||||    
T  3550774 ttataagtaagaggactcataaacccattgccttaaagttttgggtaagagtgtg 3550828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 17294631 - 17294685
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  17294631 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagtgtg 17294685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 26661626 - 26661572
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||| ||||||  |||||||||| |||||||||||||||||||||||||||    
T  26661626 ttataagtgagaggacccataaactcattgccttaaggttttgggtaagagtgtg 26661572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 32594820 - 32594766
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| || ||||||||||||||||||||||||    
T  32594820 ttataagtaagaggacccataaactcattgtcttaaggttttgggtaagagtgtg 32594766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 40082461 - 40082514
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  40082461 ttataagtaagaggat-cataaattcattgccttaaggttttgggtaagagtgtg 40082514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 41157045 - 41157099
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||| ||| |||||||||||||||||||||||    
T  41157045 ttataagtaagaggacccataaactcattgctttaaggttttgggtaagagtgtg 41157099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 11977334 - 11977389
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||||| | ||||||||  | ||||||||||||||||||||||||||||    
T  11977334 ttataagtaagagcactcataaacctaatgccttaaggttttgggtaagagtgtga 11977389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 22077214 - 22077159
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  |||||||||| |||| ||||||||||| |||||||||||    
T  22077214 ttataagtaagaggacccataaactcattgccctaaggttttggataagagtgtga 22077159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 34364561 - 34364616
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||| | ||||| ||  |||||||||||||||||||||||||||    
T  34364561 ttataagtaagaggatccgtaaacccatagccttaaggttttgggtaagagtgtga 34364616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 44290562 - 44290511
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 331  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||    
T  44290562 ttataagtaagaggacccataaacccattgccttaaggttttgggtaagagt 44290511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 3875435 - 3875381
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || |||||||||||||| ||||||| ||||    
T  3875435 ttataagtaagaggactcataaacccattgccttaaggttttaggtaagaatgtg 3875381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22077599 - 22077545
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||||   ||||||||||||||||||||||||||    
T  22077599 ttataagtaagaggacccataaactcgtagccttaaggttttgggtaagagtgtg 22077545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 24600418 - 24600364
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||| | ||||||||||| || |||||||||||| |||||||||||    
T  24600418 ttataagtaagagaactcataaactcattgtcttaaggttttgtgtaagagtgtg 24600364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 29798253 - 29798307
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||||||| |||||||| || ||||||||||| |||| ||||||||||    
T  29798253 ttataagtaagaggactcataaacccattgccttaaggtcttggataagagtgtg 29798307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 34364979 - 34365033
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||  ||||||||||||||||||||||||||    
T  34364979 ttataagtaagaggacccataaacccatagccttaaggttttgggtaagagtgtg 34365033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 41759537 - 41759591
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||| ||| ||||||  || |||||||||||||||||||||||||||    
T  41759537 ttataagtaagatgatccataaatccattgccttaaggttttgggtaagagtgtg 41759591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 5320069 - 5320016
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgt 333  Q
    |||||||| ||||||  ||||||||||  |||||||||||||||||||||||||    
T  5320069 ttataagtgagaggacccataaactcatagccttaaggttttgggtaagagtgt 5320016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 38804459 - 38804406
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgt 333  Q
    |||||||||||||||| ||||||| ||   ||||||||||||||||||||||||    
T  38804459 ttataagtaagaggatccataaacccataaccttaaggttttgggtaagagtgt 38804406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 66576 - 66525
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 331  Q
    |||||||||||||||| |||||||  |  |||||||||||||||||||||||    
T  66576 ttataagtaagaggatccataaacatatggccttaaggttttgggtaagagt 66525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 1188697 - 1188638
Alignment:
Q  275 atatgttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||| |||||||| ||| || ||||||||||| ||| |||||||||||||||| ||||||    
T  1188697 atattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 76
Target Start/End: Original strand, 27723845 - 27723876
Alignment:
Q  45 ataatttaagaaaatgaaagtgattgaatata 76  Q
    ||||||||||||||||||||||||||||||||    
T  27723845 ataatttaagaaaatgaaagtgattgaatata 27723876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 31767265 - 31767210
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  ||| |||  | ||||||||||||||||||||||||||||    
T  31767265 ttataagtaagaggacccattaacctaatgccttaaggttttgggtaagagtgtga 31767210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 44290929 - 44290882
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaa 327  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||    
T  44290929 ttataagtaagaggacccataaacccattgccttaaggttttgggtaa 44290882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 47380255 - 47380216
Alignment:
Q  296 tcataaactcactgccttaaggttttgggtaagagtgtga 335  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  47380255 tcataaactcattgccttaaagttttgggtaagagtgtga 47380216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 66191 - 66137
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  |||||||  |  ||||||||||||||||||||||||||    
T  66191 ttataagtaagaggacccataaacctatggccttaaggttttgggtaagagtgtg 66137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 37556166 - 37556219
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| ||  ||||||||||||||||||||||||||    
T  37556166 ttataagtaagaggac-cataaacccatagccttaaggttttgggtaagagtgtg 37556219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 41157429 - 41157483
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || |||||| |||||||| |||||||||||    
T  41157429 ttataagtaagaggacccataaacccattgcctttaggttttgagtaagagtgtg 41157483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 45494077 - 45494024
Alignment:
Q  281 tataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    ||||||||||| ||| ||||||| || |||||||| ||||||| ||||||||||    
T  45494077 tataagtaagatgatccataaacccattgccttaaagttttggataagagtgtg 45494024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 3497279 - 3497235
Alignment:
Q  44 aataatttaagaaaatgaaagtgattgaatataataacatgtgtc 88  Q
    |||||||| | | |||||||||||||||||||||| |||||||||    
T  3497279 aataattttaaataatgaaagtgattgaatataatcacatgtgtc 3497235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 9955962 - 9956018
Alignment:
Q  280 ttataagtaagaggattcat-aaactcactgccttaaggttttgggtaagagtgtga 335  Q
    |||||||||||||||  ||| ||||  | ||||||||||||||||||||||||||||    
T  9955962 ttataagtaagaggacccattaaaccaattgccttaaggttttgggtaagagtgtga 9956018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 27737006 - 27737034
Alignment:
Q  49 tttaagaaaatgaaagtgattgaatataa 77  Q
    |||||||||||||||||||||||||||||    
T  27737006 tttaagaaaatgaaagtgattgaatataa 27737034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 30630742 - 30630690
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    ||||||||||||| |  ||||||| || |||||||| ||||||||||||||||    
T  30630742 ttataagtaagagaacccataaacacattgccttaaagttttgggtaagagtg 30630690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 40494298 - 40494258
Alignment:
Q  44 aataatttaagaaaatgaaagtgattgaatataataacatg 84  Q
    ||||||||||| |||||||||||||||||| |||| |||||    
T  40494298 aataatttaagcaaatgaaagtgattgaatttaatcacatg 40494258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 41184192 - 41184152
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttt 320  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  41184192 ttataagtaagaggatccataaacccattgccttaaggttt 41184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 48588592 - 48588540
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtg 332  Q
    |||||||||||| ||  | |||| ||| |||||||||||||||||||||||||    
T  48588592 ttataagtaagaagacccgtaaattcattgccttaaggttttgggtaagagtg 48588540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 50187309 - 50187341
Alignment:
Q  44 aataatttaagaaaatgaaagtgattgaatata 76  Q
    |||||||||||||||| ||||||||||||||||    
T  50187309 aataatttaagaaaataaaagtgattgaatata 50187341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 1210 - 1159
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagt 331  Q
    ||||||| || |||| |||||||| || ||||||||||||||||||||||||    
T  1210 ttataagaaaaaggactcataaacccattgccttaaggttttgggtaagagt 1159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 1795 - 1741
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||| ||||||  ||||||| || |||||||||||||| ||||||||||||    
T  1795 ttataagtgagaggacccataaacccattgccttaaggtttttggtaagagtgtg 1741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 5031 - 5090
Alignment:
Q  275 atatgttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||| |||||||||| | ||  |||||||||| ||||||| |||||||||||||||||||    
T  5031 atatcttataagtaaaaagacccataaactcattgccttatggttttgggtaagagtgtg 5090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 5411 - 5465
Alignment:
Q  280 ttataagtaagaggattcataaactcactgccttaaggttttgggtaagagtgtg 334  Q
    |||||||||||||||  ||||||| || ||||||||| |||||| ||||||||||    
T  5411 ttataagtaagaggacccataaacccattgccttaagattttggataagagtgtg 5465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University