View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_low_15 (Length: 327)
Name: NF6715_low_15
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 42021475 - 42021778
Alignment:
| Q |
4 |
aatgagaaaagtaaagtaacatggagcattttgaagtcatttgtggaatgtggggtaatatatgtgctttgtacatactattacaactttgctacgcaat |
103 |
Q |
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| T |
42021475 |
aatgagaaaagtaaagtaacatggagcattttgaagtcatttgtggaatgtggggtaatatatgtgctttgtacatactattacaactttgctacgcaat |
42021574 |
T |
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| Q |
104 |
ttcttttgcggggtatcaaaactaaatagtctttgccactatcttgtacaaattatttttctacatgttttctaaatgcac-nnnnnnnggtattatatt |
202 |
Q |
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| T |
42021575 |
ttcttttgcggggtatcaaaactaaatagtctttgccactatcttgtacaaattatttttctacatgttttctaaatgcacaaaaaaaaggtattatatt |
42021674 |
T |
|
| Q |
203 |
ggatccccaattaagatgattcggaacattatattaactggtagggtgcatacacgctaccagcatgttcgtgggccgtggcaaacagtttcattagtac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42021675 |
ggatccccaattaagatgattcggaacattatattaactggtagggtgcatacacgctaccagcatgttcgtgggccgtggtaaacagtttcattagtac |
42021774 |
T |
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| Q |
303 |
tact |
306 |
Q |
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|||| |
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| T |
42021775 |
tact |
42021778 |
T |
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