View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_low_16 (Length: 321)
Name: NF6715_low_16
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 41572027 - 41572297
Alignment:
| Q |
1 |
tcgcgcgtccatgaaactttttgacctgaaaatgagaagttaacatttgttgcttcccgcggtttcaaacatagacctcacttagtaaatttgagtacca |
100 |
Q |
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| T |
41572027 |
tcgcgcatccatgagattttttgacctgaaaatgagaagttaacatttgttgcttcccgcggtttcaagcatagaactcacttagtaaatttgagtacca |
41572126 |
T |
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| Q |
101 |
aaatgtctcagcggtattgatttgaagggcaaaatggtggatttaatattatattttttagaaactgcaaattttattcacttgacgtgtgtgcgcaaga |
200 |
Q |
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| T |
41572127 |
aactgtcttagcggtattgatttgaagggcaaaatggtggatttaatattatattttttagaaactgcaaattttattcacttgacgtgtgtgcgcaaga |
41572226 |
T |
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| Q |
201 |
agcacacaaaaacccgcggctagataacaaacagaattacaaagggctcagataaaaacagaaaccccaaa |
271 |
Q |
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| T |
41572227 |
agcacacgaaaacccgcggctagataacaaacagaattacaaagggctcagataaaaacagaaacctcaaa |
41572297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 41584440 - 41584583
Alignment:
| Q |
1 |
tcgcgcgtccatgaaactttttgacctgaaaatgagaagttaacatttgttgcttcccgcggtttcaaacatagacctcacttagtaaatttgagtacca |
100 |
Q |
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| T |
41584440 |
tcgcgcgtccataagaccttttgatgtgaaaatgagaagttaatatttgttgcttcccgcggtttcaaacataggcct---ttttttaatttgagtacga |
41584536 |
T |
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| Q |
101 |
aaatgtctcagcggtattgatttgaagggcaaaatggtggatttaat |
147 |
Q |
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| T |
41584537 |
aaatgtctcagcggtattgatttgaagggcaaaatggtggatttaat |
41584583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 302
Target Start/End: Complemental strand, 27754330 - 27754182
Alignment:
| Q |
154 |
ttttttagaaactgcaaattttattcacttgacgtgtgtgcgcaagaagcacacaaaaacc-cgcggctagataacaaacagaattacaaagggctcaga |
252 |
Q |
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|||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |
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| T |
27754330 |
ttttttagaaacggcaaattttattcac--gacaagtgtgtgcaagaagcacacaaaaaactcgcggctagaaaacaaacagaattacaaagggctcaga |
27754233 |
T |
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| Q |
253 |
taaaaacagaaaccccaaaaccacctc-aaacctccaaaaacacactaaac |
302 |
Q |
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| T |
27754232 |
taataacagaaatccccaaaccaccacaaaaccaccaaaaacacactaaac |
27754182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 21941680 - 21941778
Alignment:
| Q |
151 |
atattttttagaaactgcaaattttattcacttgacgtgtgtgcgcaagaagcacacaaaaacccgcggctagataacaaacagaattacaaagggctca |
250 |
Q |
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| T |
21941680 |
atattttttagaaacggctaaatttattcact--acgagtttgtgcaagaaacacactaaaactcgcgggcata-aacaaacagaattacagagggctca |
21941776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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