View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_low_19 (Length: 288)
Name: NF6715_low_19
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_19 |
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| [»] scaffold0152 (1 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 12931 - 12663
Alignment:
| Q |
1 |
tagcttagtttcataaaaagcattagcacgttaaacaatttaaagatgtttcttttgaatttggttattttcatcatacgcacataaataataaactgtg |
100 |
Q |
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| T |
12931 |
tagcttagtttcgtaaaaagcattagcacgttaaacaatttaaagatgtttcttttgaatttggttattttcatcatacgcacataaataataaactgtg |
12832 |
T |
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| Q |
101 |
tcaacactccaaagtaacgtcaataaggttgcnnnnnnngccattaacctctttgattttcaagacctccctctcaacaacgtgtcttataacatctgga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
12831 |
tcaacactccaaagtaacgtcaataaggttgcttcttttgccattaacctctttgattttcaaggcatccctctcaacaacgtgtcttataacatctgga |
12732 |
T |
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| Q |
201 |
aataataatgag-------gattttatttggataaagattatacaattctcaacatctcagaagttaatac |
264 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12731 |
aataataatgaggattagtgattttatttggataaagattatacaattctcaaca--tcagaagttaatac |
12663 |
T |
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