View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6715_low_27 (Length: 220)

Name: NF6715_low_27
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6715_low_27
NF6715_low_27
[»] chr3 (2 HSPs)
chr3 (1-205)||(6252082-6252286)
chr3 (1-205)||(6172738-6172942)
[»] chr6 (2 HSPs)
chr6 (1-205)||(10404535-10404738)
chr6 (5-188)||(29336936-29337120)
[»] chr5 (2 HSPs)
chr5 (1-205)||(434354-434558)
chr5 (1-96)||(6821118-6821213)
[»] chr1 (4 HSPs)
chr1 (1-202)||(19036485-19036686)
chr1 (1-155)||(32499802-32499955)
chr1 (1-154)||(15585903-15586056)
chr1 (1-154)||(28040022-28040174)
[»] chr2 (2 HSPs)
chr2 (1-177)||(9684306-9684482)
chr2 (1-158)||(8589125-8589275)
[»] chr8 (6 HSPs)
chr8 (1-192)||(24126079-24126270)
chr8 (3-185)||(24322685-24322866)
chr8 (4-169)||(4700702-4700866)
chr8 (2-155)||(10950092-10950245)
chr8 (2-155)||(10958097-10958250)
chr8 (1-75)||(140356-140430)
[»] chr7 (3 HSPs)
chr7 (1-116)||(19278230-19278345)
chr7 (45-153)||(32802797-32802905)
chr7 (110-202)||(19279734-19279826)
[»] chr4 (2 HSPs)
chr4 (3-158)||(23808588-23808743)
chr4 (4-114)||(41680464-41680571)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6252286 - 6252082
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6252286 cccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttgcattaactcaacaacactggaaactctcttcatgacca 6252187  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6252186 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatg 6252087  T
Q  201 ctgat 205  Q
    |||||    
T  6252086 ctgat 6252082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6172942 - 6172738
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  6172942 cccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaaggtgcattaactcaacaacactggaaactctcttcatgacca 6172843  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6172842 acctctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatg 6172743  T
Q  201 ctgat 205  Q
    |||||    
T  6172742 ctgat 6172738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10404535 - 10404738
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||  |||||||||||||||| || ||| |||||||||||  ||    
T  10404535 cccatgcatgatcgaagtagaagaagctcactctaaggatctcgtaactatgaaagaaggagcattaactcaacaaccctggaagctctcttcatggtca 10404634  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatg 200  Q
    |||||||||||||||| ||||||  |||||||| ||||||||  ||||||| |||||||| ||||||||||||||||| |||||| || |||||||||||    
T  10404635 acccctcgataaaacctttatcttggctaacaatccctccaagaaatttca-ccccaatgtcggcctcccaatatccacagggaacaagccctcgcgatg 10404733  T
Q  201 ctgat 205  Q
    |||||    
T  10404734 ctgat 10404738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 29337120 - 29336936
Alignment:
Q  5 tgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaaccc 104  Q
    |||| ||| ||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||  | |  |  ||  |||||||||| | | |||    
T  29337120 tgcacgattgaagtagaagaagctcactctgaggatctcataactgtggaagaagatgcattaactcagtagcctttaaagttctcttcatggcaagccc 29337021  T
Q  105 ctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatg-acggcctcccaatatccatagggaaaaa 188  Q
    |||||||||||   ||||||  |||||||||| ||| | |||||| ||||| ||||  | ||||||||||||||| | |||||||    
T  29337020 ctcgataaaacatgtatctcgactaacaacccttccgagcaattttacccctaatgtcccgcctcccaatatccaaaaggaaaaa 29336936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 434354 - 434558
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||||||||||||||||| |  ||||| || ||||||||||||| |||||||||| ||||||||||||||||| || ||| ||||||| ||| |||    
T  434354 cccatgcatgatcgaagtagaaaaatctcacgctgaggatctcgtaaccgtggaagaaggtgcattaactcaacaactctggaagctctctttatggcca 434453  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatg 200  Q
    |||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||| || |||||||||||    
T  434454 acccctcgataaaacctttatcgcggctaacaacccctccaagcaatttcacccccaatgtcggcctcctaatatccacagggaacaaaccctcgcgatg 434553  T
Q  201 ctgat 205  Q
     ||||    
T  434554 ttgat 434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6821213 - 6821118
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatg 96  Q
    |||||| ||||||||||||||||| ||||| | | || ||||| ||  ||||||||||| |||| |||||||||||| ||  || |||||||||||    
T  6821213 cccatgtatgatcgaagtagaagaagctcagtatgagaatctcttagttgtggaagaagatgcactaactcaacaaccctgaaagctctcttcatg 6821118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 19036485 - 19036686
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    ||||||||  |||||||||||||| ||||||||| |||||| |||||||| |||||||| |||||||||||| || | || ||| ||||||||||| |||    
T  19036485 cccatgcacaatcgaagtagaagaagctcactctgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctcttcatggcca 19036584  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatg 200  Q
    ||||||| |||||||  |||||||  |||||||||||||||| |||||||||||||||||  |||||||||||||||  |||||| |||||| | |||||    
T  19036585 acccctcaataaaacttttatctcgactaacaacccctccaagcaatttcacccccaatgttggcctcccaatatccgcagggaacaaccccccacgatg 19036684  T
Q  201 ct 202  Q
    ||    
T  19036685 ct 19036686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 32499955 - 32499802
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    ||||||||||||||||||||||||  |||| | ||  |||||| ||| | ||||||||  ||||||||||||||||| |||||| |||| ||| || | |    
T  32499955 cccatgcatgatcgaagtagaagaaactcattttagagatctcttaattatggaagaaaatgcattaactcaacaactctagaagctctattcctggcta 32499856  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccc 155  Q
    ||||||||||||||||  |||||| |||||| | |||||||||||||||||||||    
T  32499855 acccctcgataaaacctctatctcggctaac-atccctccaaacaatttcacccc 32499802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 15585903 - 15586056
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    ||||||||||||||||||| || | || |||| || || |||| ||| ||||||||||| ||||||||||||||||| | |  ||||||||||||   ||    
T  15585903 cccatgcatgatcgaagtataataagcccactttatgggtctcttaattgtggaagaagatgcattaactcaacaactccaacaactctcttcatattca 15586002  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcaccc 154  Q
    ||| |||||||||||| |||||||  | |||  |||||| ||| ||||||||||    
T  15586003 accactcgataaaacctttatctcgaccaaccgcccctctaaaaaatttcaccc 15586056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 28040174 - 28040022
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||| ||||||||||||||| ||| ||||| |||||  |||||||| |||||||| || ||||| | | || | ||  || ||||||||||| | |    
T  28040174 cccatgcacgatcgaagtagaagaagctaactctgaggattccgtaactgaggaagaagatgtattaa-ttagcagccctgtaagctctcttcatggcta 28040076  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcaccc 154  Q
    ||||||| |||||||| |||||||  |||| | ||||||| | |||||||||||    
T  28040075 acccctcaataaaacctttatctcgtctaaaagcccctccgagcaatttcaccc 28040022  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 9684482 - 9684306
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||| | ||||||||||||| ||||||||| |||||| ||||| || |||||||| |||||||||||| || | ||  || ||||||||||| |||    
T  9684482 cccatgcacgttcgaagtagaagaagctcactctgaggatcccgtaagtgaggaagaagatgcattaactcagcagccctgaaagctctcttcatggcca 9684383  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatcc 177  Q
    |||||||||||||||| ||||||| ||||||| |||| || | ||||||||||||||| | ||||||||||||||||    
T  9684382 acccctcgataaaacctttatctcggctaacagccccaccgagcaatttcacccccaacgtcggcctcccaatatcc 9684306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 8589125 - 8589275
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    ||||||||||||||||||||| || | ||||||  |||||| | ||| ||||||||||  |||||||||||||||    |  |   ||||||| || |||    
T  8589125 cccatgcatgatcgaagtagaggaagttcactcggaggatcccttaattgtggaagaatatgcattaactcaaca----ttca---tctcttcgtggcca 8589217  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaa 158  Q
    |||||| ||||||||   || ||| ||||||||||||||||| |||||||||||||||    
T  8589218 accccttgataaaacatctacctcggctaacaacccctccaagcaatttcacccccaa 8589275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 24126079 - 24126270
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||| ||||||||||||||| ||||||||| ||||| ||||||| | |||||||| ||||| || |||  | | || ||||||||||||||| |||    
T  24126079 cccatgcacgatcgaagtagaagaagctcactctgaggatgtcgtaaccgaggaagaagatgcatcaagtcagtagccctggaaactctcttcatggcca 24126178  T
Q  101 acccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccc 192  Q
    ||||||  |||||||| || |||| ||||||| ||||| | |  |||||||||||||| |  ||||||||||||||| ||||||| ||||||    
T  24126179 acccctaaataaaacctttgtctcggctaacagccccttcgagaaatttcacccccaacgttggcctcccaatatccgtagggaacaacccc 24126270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 24322685 - 24322866
Alignment:
Q  3 catgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaac 102  Q
    ||||||||||||||||||||||  |||||| |   | |||||||| ||||||||||| ||||||||||||  | | | |||| |||||||||||   | |    
T  24322685 catgcatgatcgaagtagaagaaactcactattcagctctcgtaattgtggaagaagatgcattaactcagtagccc-agaagctctcttcatgggtagc 24322783  T
Q  103 ccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaa 185  Q
    |||||||||||||   |||||| ||||||| ||||||| | |||||||||||| |||| |||| |||||||||||| ||||||    
T  24322784 ccctcgataaaacatgtatctcggctaacagcccctccgagcaatttcacccctaatgtcggcttcccaatatccaaagggaa 24322866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 4700702 - 4700866
Alignment:
Q  4 atgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaacc 103  Q
    ||||||||||||||||||||| |||| |||| ||||||| | |||| | |||||   ||||||||||||||||| || ||| |||||||||||  |||||    
T  4700702 atgcatgatcgaagtagaagaagctcgctctgaggatcttgcaactattgaagacaatgcattaactcaacaaccctggaagctctcttcatggtcaacc 4700801  T
Q  104 cctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcc 169  Q
    ||||||||||||| |||||||  |||| |  ||||| | | |||||||||| ||| ||||||||||    
T  4700802 cctcgataaaacctttatctcgactaatagaccctcgaga-aatttcacccacaacgacggcctcc 4700866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 10950245 - 10950092
Alignment:
Q  2 ccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaa 101  Q
    |||||||||||||||||| |||| ||||||| | | ||||| |||||||||||| | | |||| ||||||| |||| || ||| |||| |||||||  ||    
T  10950245 ccatgcatgatcgaagtaaaagaagctcactttgatgatcttgtaactgtggaaaaggatgcaataactcagcaactctggaagctctattcatgattaa 10950146  T
Q  102 cccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccc 155  Q
    ||||||||||||||| ||||||| | | ||| ||||||| || |||||||||||    
T  10950145 cccctcgataaaacctttatctcggttgacagcccctccgaaaaatttcacccc 10950092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 10958250 - 10958097
Alignment:
Q  2 ccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaa 101  Q
    |||||||||||||||||| |||| ||||||| | | ||||| |||||||||||| | | |||| ||||||| |||| || ||| |||| |||||||  ||    
T  10958250 ccatgcatgatcgaagtaaaagaagctcactttgatgatcttgtaactgtggaaaaggatgcaataactcagcaactctggaagctctattcatgattaa 10958151  T
Q  102 cccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccc 155  Q
    ||||||||||||||| ||||||| | | ||| ||||||| || |||||||||||    
T  10958150 cccctcgataaaacctttatctcggttgacagcccctccgaaaaatttcacccc 10958097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 140356 - 140430
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaaca 75  Q
    |||||||||||||||||||||||| |||||||||||||||| | || |||||||||||  |||||||||||||||    
T  140356 cccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 140430  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 19278230 - 19278345
Alignment:
Q  1 cccatgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgacca 100  Q
    |||||||| |||| |||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||| || | || ||| |||| |||||| | |    
T  19278230 cccatgcacgatcaaagtagaagaagctcactatgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctattcatggcta 19278329  T
Q  101 acccctcgataaaacc 116  Q
    ||||||| ||||||||    
T  19278330 acccctcaataaaacc 19278345  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 32802797 - 32802905
Alignment:
Q  45 taactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaacccctcgataaaaccattatctcagctaacaacccctccaaac 144  Q
    |||| |||||||||| ||||||| |||||||   ||| || |||| ||||||  ||||||||||||||||||  ||||||  |||||||||||||  |||    
T  32802797 taaccgtggaagaagatgcattagctcaacagtcctaaaagctcttttcatggtcaacccctcgataaaacctctatctcgtctaacaacccctctgaac 32802896  T
Q  145 aatttcacc 153  Q
    |||||||||    
T  32802897 aatttcacc 32802905  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 19279734 - 19279826
Alignment:
Q  110 taaaaccattatctcagctaacaacccctccaaacaatttcacccccaatgacggcctcccaatatccatagggaaaaacccctcgcgatgct 202  Q
    ||||||| ||||||| ||||||| ||||||| | |||||||||||| || | ||| |||| ||||||   | |||| |||||||| |||||||    
T  19279734 taaaacctttatctcggctaacagcccctccgagcaatttcacccctaacgtcggtctcctaatatctgcatggaacaacccctcacgatgct 19279826  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 23808743 - 23808588
Alignment:
Q  3 catgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaac 102  Q
    |||||||| ||||||||||| | ||||||  | |||| | | ||||||||||||||| || ||||||||||||||   | |||||||||||||  |||||    
T  23808743 catgcatggtcgaagtagaataagctcacgttgaggaccccttaactgtggaagaagatgtattaactcaacaacttgaaaaactctcttcatagccaac 23808644  T
Q  103 ccctcgataaaaccattatctcagctaacaacccctccaaacaatttcacccccaa 158  Q
    | ||||| ||||||  ||| ||  |||||| |||||| || ||| |||||||||||    
T  23808643 cactcgacaaaacctctatatccactaacagcccctctaagcaaattcacccccaa 23808588  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 41680464 - 41680571
Alignment:
Q  4 atgcatgatcgaagtagaagatgctcactctaaggatctcgtaactgtggaagaagttgcattaactcaacaacactagaaactctcttcatgaccaacc 103  Q
    ||||| |||| |||||||||| |||||||   |||||| | ||| | ||||||||| ||  ||||||||||||| ||   ||||||||||||| ||||||    
T  41680464 atgcacgatcaaagtagaagaagctcact---aggatcccttaattttggaagaagatgttttaactcaacaacccttacaactctcttcatggccaacc 41680560  T
Q  104 cctcgataaaa 114  Q
    |||||||||||    
T  41680561 cctcgataaaa 41680571  T

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