View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6715_low_29 (Length: 217)

Name: NF6715_low_29
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6715_low_29
NF6715_low_29
[»] chr8 (15 HSPs)
chr8 (1-217)||(43998875-43999102)
chr8 (70-217)||(24884936-24885083)
chr8 (70-217)||(21642991-21643138)
chr8 (70-217)||(21642616-21642763)
chr8 (70-217)||(21643366-21643513)
chr8 (70-214)||(21643806-21643950)
chr8 (70-217)||(21641491-21641638)
chr8 (70-217)||(21641866-21642013)
chr8 (70-217)||(21642241-21642388)
chr8 (99-215)||(32010818-32010934)
chr8 (99-215)||(32015992-32016108)
chr8 (170-217)||(17955614-17955661)
chr8 (105-170)||(42514180-42514245)
chr8 (70-121)||(17955558-17955609)
chr8 (99-171)||(2165553-2165625)
[»] chr2 (12 HSPs)
chr2 (47-217)||(4163279-4163449)
chr2 (70-217)||(28751454-28751601)
chr2 (99-215)||(44096594-44096710)
chr2 (99-215)||(42728307-42728423)
chr2 (99-215)||(42723138-42723254)
chr2 (99-213)||(40392557-40392674)
chr2 (131-213)||(40518244-40518329)
chr2 (99-215)||(44754293-44754399)
chr2 (99-215)||(44759459-44759565)
chr2 (9-48)||(4163182-4163221)
chr2 (9-48)||(28751343-28751382)
chr2 (100-162)||(40519925-40519987)
[»] chr3 (20 HSPs)
chr3 (70-217)||(17358061-17358208)
chr3 (70-217)||(34128894-34129041)
chr3 (70-217)||(10321666-10321813)
chr3 (70-217)||(54270868-54271015)
chr3 (70-200)||(30338477-30338607)
chr3 (61-217)||(4117307-4117463)
chr3 (70-217)||(3482137-3482284)
chr3 (72-217)||(3476672-3476817)
chr3 (99-215)||(15762717-15762833)
chr3 (99-215)||(15767878-15767994)
chr3 (99-215)||(20090349-20090465)
chr3 (99-215)||(20095474-20095590)
chr3 (99-213)||(17368957-17369074)
chr3 (99-213)||(55129028-55129145)
chr3 (70-150)||(30341691-30341771)
chr3 (9-48)||(17358300-17358339)
chr3 (9-48)||(34128762-34128801)
chr3 (9-48)||(30341564-30341603)
chr3 (134-169)||(10321816-10321851)
chr3 (9-48)||(54271108-54271148)
[»] chr1 (11 HSPs)
chr1 (70-214)||(5730331-5730475)
chr1 (75-217)||(3584824-3584966)
chr1 (74-217)||(48246412-48246555)
chr1 (99-215)||(36684402-36684518)
chr1 (99-215)||(34317972-34318088)
chr1 (99-213)||(27711561-27711678)
chr1 (99-213)||(11250863-11250980)
chr1 (131-209)||(37404190-37404269)
chr1 (99-209)||(37409277-37409390)
chr1 (99-213)||(27716681-27716798)
chr1 (9-48)||(5730569-5730608)
[»] chr7 (17 HSPs)
chr7 (74-217)||(21080768-21080911)
chr7 (79-217)||(2234364-2234502)
chr7 (70-217)||(17495626-17495773)
chr7 (70-217)||(17557441-17557588)
chr7 (70-215)||(19309336-19309481)
chr7 (70-215)||(42572170-42572315)
chr7 (70-217)||(12934620-12934767)
chr7 (70-217)||(43893092-43893239)
chr7 (70-217)||(16539137-16539284)
chr7 (70-217)||(16626378-16626525)
chr7 (70-198)||(47176875-47177003)
chr7 (131-217)||(32212439-32212525)
chr7 (99-215)||(33238294-33238410)
chr7 (99-215)||(47994092-47994208)
chr7 (99-215)||(47999267-47999383)
chr7 (99-215)||(33243471-33243587)
chr7 (9-47)||(21080643-21080681)
[»] chr6 (12 HSPs)
chr6 (70-217)||(2817872-2818019)
chr6 (70-217)||(34376152-34376299)
chr6 (70-215)||(31981788-31981933)
chr6 (70-217)||(34142312-34142459)
chr6 (70-217)||(34154928-34155075)
chr6 (96-217)||(24191123-24191244)
chr6 (96-217)||(24192220-24192341)
chr6 (99-215)||(22697930-22698046)
chr6 (99-213)||(22703106-22703223)
chr6 (131-214)||(29491008-29491094)
chr6 (72-161)||(6728166-6728255)
chr6 (131-213)||(21401979-21402064)
[»] chr5 (14 HSPs)
chr5 (70-217)||(26709326-26709473)
chr5 (70-217)||(26979060-26979207)
chr5 (70-217)||(1413777-1413924)
chr5 (73-215)||(24776537-24776679)
chr5 (90-215)||(24771099-24771224)
chr5 (92-217)||(36254059-36254184)
chr5 (99-213)||(17505191-17505308)
chr5 (99-213)||(17510296-17510413)
chr5 (99-213)||(41858831-41858941)
chr5 (99-213)||(42019811-42019928)
chr5 (99-213)||(42024591-42024708)
chr5 (99-213)||(43579898-43580015)
chr5 (9-48)||(26709545-26709584)
chr5 (9-48)||(26979279-26979318)
[»] chr4 (21 HSPs)
chr4 (70-217)||(53797852-53797999)
chr4 (70-217)||(51019098-51019245)
chr4 (90-217)||(9763762-9763889)
chr4 (70-217)||(41393468-41393613)
chr4 (72-217)||(13710892-13711037)
chr4 (70-217)||(47046031-47046178)
chr4 (96-215)||(13695387-13695506)
chr4 (99-215)||(39999361-39999477)
chr4 (99-215)||(40004319-40004435)
chr4 (99-215)||(54343495-54343611)
chr4 (99-215)||(54348649-54348765)
chr4 (128-215)||(36354434-36354521)
chr4 (99-215)||(36359620-36359736)
chr4 (99-213)||(21299573-21299690)
chr4 (99-213)||(8985145-8985262)
chr4 (99-213)||(13700748-13700865)
chr4 (99-213)||(21304693-21304810)
chr4 (131-213)||(8980057-8980142)
chr4 (135-213)||(54991714-54991795)
chr4 (131-213)||(54990582-54990667)
chr4 (9-48)||(9763609-9763649)
[»] scaffold0060 (2 HSPs)
scaffold0060 (70-217)||(37233-37380)
scaffold0060 (9-48)||(37473-37513)
[»] scaffold0594 (1 HSPs)
scaffold0594 (70-217)||(8933-9080)
[»] scaffold0166 (2 HSPs)
scaffold0166 (73-215)||(18920-19062)
scaffold0166 (72-217)||(13466-13611)
[»] scaffold0055 (1 HSPs)
scaffold0055 (99-215)||(3316-3432)
[»] scaffold0052 (1 HSPs)
scaffold0052 (99-215)||(81103-81219)
[»] scaffold0014 (2 HSPs)
scaffold0014 (99-215)||(26665-26781)
scaffold0014 (99-215)||(31837-31953)
[»] scaffold0517 (1 HSPs)
scaffold0517 (99-209)||(3805-3918)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 43998875 - 43999102
Alignment:
Q  1 tttttggggctccgagattcccgcacacggagaccaagtctcaca-----------cgtcgtgggttaccgttgctggggcggcggagaaaacaaggtga 89  Q
    ||||||| |||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||| ||||||    
T  43998875 tttttggtgctccgagattcccgcacacggagaccaagtctcacacgttttccacacgtcgtgggttaccgttgctggggcggcggagaaaacgaggtga 43998974  T
Q  90 aatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcg 189  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43998975 aatcccctctataaatagagagctcgggatttacattctttactctaaaactgagaatcgaatcctcttctctgattttctccccttctcatctccctcg 43999074  T
Q  190 gtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||    
T  43999075 gtttgtgttgacgaaccgttcttttctt 43999102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 24885083 - 24884936
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  24885083 cggcggagaaaacgaggtcaaatcctctctataaatagagagctcgggaatggaattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 24884984  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24884983 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 24884936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 21642991 - 21643138
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| || ||| ||||||||||||||| ||||||| |   ||| || |||||||||| ||||||||||||||||||| ||||||||    
T  21642991 cggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttc 21643090  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21643091 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 21643138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 21642616 - 21642763
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| || ||| ||||||||||||||| ||||||| |   ||| || |||||||||  ||||||||||||||||||| ||||||||    
T  21642616 cggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttc 21642715  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21642716 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 21642763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 21643366 - 21643513
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| || ||| ||||||||||||||| ||||||| |   ||| || |||||||||| ||||||||||||||||||| ||||||||    
T  21643366 cggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttc 21643465  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  21643466 tccccttctcatctccctcgatttgtgttgacgaaccgttcttttctt 21643513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 21643806 - 21643950
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| || ||| ||||||||||||||| ||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  21643806 cggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 21643905  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttctttt 214  Q
    |||||||| |||||||||||||||||||||| |||||||||||||    
T  21643906 tccccttcccatctccctcggtttgtgttgatgaaccgttctttt 21643950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 21641491 - 21641638
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| || ||| ||||||||||||||| ||||||| |   ||| || |||||||||  ||||||||||||||||||| ||||||||    
T  21641491 cggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttc 21641590  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  21641591 tccccttctcatctccctcggtttatgttgacgaaccgttcttttctt 21641638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 21641866 - 21642013
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| || ||| ||||||||||||||| ||||||| |   ||| || |||||||||  ||||||||||||||||||| ||||||||    
T  21641866 cggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttc 21641965  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  21641966 tccccttctcatctccctcggtttatgttgacgaaccgttcttttctt 21642013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 21642241 - 21642388
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| || ||| ||||||||||||||| ||||||| |   ||| || |||||||||  ||||||||||||||||||| ||||||||    
T  21642241 cggcggagaaaacgaggtaaattcctctctataaatagagacctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttc 21642340  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  21642341 tccccttctcatctccctcggtttatgttgacgaaccgttcttttctt 21642388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 32010934 - 32010818
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  32010934 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 32010835  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  32010834 gacgaatcgttcttttc 32010818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 32016108 - 32015992
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  32016108 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 32016009  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  32016008 gacgaatcgttcttttc 32015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 17955614 - 17955661
Alignment:
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17955614 tccccttctcatctccctcggtttgtgttgacgaatcgttcttttctt 17955661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 42514180 - 42514245
Alignment:
Q  105 tagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttct 170  Q
    |||||||||||||| | | ||| || |||||||||| |||||||||||||||||||||||||||||    
T  42514180 tagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttct 42514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 17955558 - 17955609
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggattt 121  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  17955558 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcaggattt 17955609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 2165553 - 2165625
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctc 171  Q
    ||||||| |||||||||||| |   ||| || ||||||||| |||||||| ||| ||||||||| ||||||||    
T  2165553 tataaattgagagctcgggaatagtattcttcactccaaaattgagaatcaaatgctcttctctagttttctc 2165625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 4163279 - 4163449
Alignment:
Q  47 gtcgtgggttaccgttgctggggcggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaa 146  Q
    |||||||| || |||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||    
T  4163279 gtcgtgggctaacgttggcgggtcggcggagaaaacaaggttaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaa 4163378  T
Q  147 tcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163379 tcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 4163449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 28751454 - 28751601
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| | | ||| || |||||||||| ||||||||||||||||||| ||||||||    
T  28751454 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctttggttttc 28751553  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751554 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 28751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 44096710 - 44096594
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  44096710 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 44096611  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  44096610 gacgaatcgttcttttc 44096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 42728307 - 42728423
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  42728307 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 42728406  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  42728407 gacgaatcgttcttttc 42728423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 42723138 - 42723254
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  42723138 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 42723237  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||  ||||||||||    
T  42723238 gacgagtcgttcttttc 42723254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 40392674 - 40392557
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| || ||||||| ||||||| || |||| |||||||    |||||||    
T  40392674 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatacttttctctgattttctctcc-tctcttctccctcccgcggtttg 40392576  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  40392575 tgttgacgaaccgttcttt 40392557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 40518244 - 40518329
Alignment:
Q  131 actccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttgtgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||    ||||||||||||||||||||||||||    
T  40518244 actccaaaactgagaatcgaatactcttctcttgttttctctcc-tctcttctccctccagcggtttgtgttgacgaaccgttcttt 40518329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 44754293 - 44754399
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||          |||||||||||||||| || ||||||||    
T  44754293 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttct----------ccccttctcatctcccgcgatttgtgtt 44754382  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  44754383 gacgaatcgttcttttc 44754399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 44759459 - 44759565
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||          |||||||||||||||| || ||||||||    
T  44759459 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttct----------ccccttctcatctcccgcgatttgtgtt 44759548  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  44759549 gacgaatcgttcttttc 44759565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 4163182 - 4163221
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  4163182 gctccgagattcccgcacgcggagaccaagtctcacacgt 4163221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 28751343 - 28751382
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  28751343 gctccgagattcccgcacgcggagaccaagtctcacacgt 28751382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 40519987 - 40519925
Alignment:
Q  100 ataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctct 162  Q
    |||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||    
T  40519987 ataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctct 40519925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 17358208 - 17358061
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  17358208 cggcagagaaaacgaggtgaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttc 17358109  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17358108 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 17358061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 34128894 - 34129041
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  34128894 cggcggagaaaacgaggtgaaatcccctctataaatagagaggtcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggttttc 34128993  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128994 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 34129041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 10321813 - 10321666
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||| ||||||||||||| |||||||    
T  10321813 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaattgaatcctcttctcaggttttc 10321714  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10321713 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 10321666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 54271015 - 54270868
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  54271015 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 54270916  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54270915 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 54270868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 30338477 - 30338607
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||  ||| || |||||||||| ||||||||||||||||||||||||||||    
T  30338477 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 30338576  T
Q  170 tccccttctcatctccctcggtttgtgttga 200  Q
    |||||||||||||||||||||||||||||||    
T  30338577 tccccttctcatctccctcggtttgtgttga 30338607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 4117307 - 4117463
Alignment:
Q  61 ttgctggggcggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttct 160  Q
    |||| ||| ||||||||||||| ||||  || || ||||||||||||||||||||||| |   ||| || |||||||||| |||||||||||||||||||    
T  4117307 ttgccgggtcggcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttct 4117406  T
Q  161 ctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117407 ttggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 4117463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 3482137 - 3482284
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| ||||  || || ||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||||||| ||||||||||    
T  3482137 cggcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttc 3482236  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3482237 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 3482284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 3476672 - 3476817
Alignment:
Q  72 gcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctc 171  Q
    ||||||||||||||||  || || ||||||||||||||||||||||| |   ||| || |||||||||   |||||||||||||||||||||||||||||    
T  3476672 gcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaacaagaatcgaatcctcttctctggttttctc 3476771  T
Q  172 cccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  3476772 cccttctcatctccctcggtttgtgttgacgaaccattcttttctt 3476817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 15762717 - 15762833
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  15762717 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 15762816  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  15762817 gacgaatcgttcttttc 15762833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 15767878 - 15767994
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  15767878 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 15767977  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  15767978 gacgaatcgttcttttc 15767994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 20090349 - 20090465
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  20090349 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 20090448  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  20090449 gacgaatcgttcttttc 20090465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 20095474 - 20095590
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  20095474 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 20095573  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  20095574 gacgaatcgttcttttc 20095590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 17369074 - 17368957
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  17369074 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 17368976  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  17368975 tgttgacgaaccgttcttt 17368957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 55129145 - 55129028
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  55129145 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 55129047  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  55129046 tgttgacgaaccgttcttt 55129028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 30341691 - 30341771
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcga 150  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||   ||| || |||||||||| |||||||||    
T  30341691 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggattgggattcttcactccaaaaccgagaatcga 30341771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 17358339 - 17358300
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17358339 gctccgagattcccgcacacggagaccaagtctcacacgt 17358300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 34128762 - 34128801
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34128762 gctccgagattcccgcacacggagaccaagtctcacacgt 34128801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 30341564 - 30341603
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  30341564 gctccgagattcccgcacgcggagaccaagtctcacacgt 30341603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 10321851 - 10321816
Alignment:
Q  134 ccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10321851 ccaaaaccgagaatcgaatcctcttctctggttttc 10321816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 54271148 - 54271108
Alignment:
Q  9 gctccgagattcccgcacacgga-gaccaagtctcacacgt 48  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  54271148 gctccgagattcccgcacgcggaggaccaagtctcacacgt 54271108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 5730475 - 5730331
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||||||||    
T  5730475 cggcggagaaaatgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 5730376  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttctttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5730375 tccccttctcatctccctcggtttgtgttgacgaaccgttctttt 5730331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 3584966 - 3584824
Alignment:
Q  75 gagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctcccc 174  Q
    |||||||| |||| |||||||||||||||||||||||||| |||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  3584966 gagaaaacgaggtcaaatcccctctataaatagagagctcaggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctcccc 3584867  T
Q  175 ttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3584866 ttctcatctccctcggtttgtgttgacgaaccgttcttttctt 3584824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 48246412 - 48246555
Alignment:
Q  74 ggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccc 173  Q
    ||||||||| |||| |||||| ||||||||||||||| ||||| | |   ||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  48246412 ggagaaaaccaggtcaaatcctctctataaatagagacctcggaaatgggattcttcactacaaaaccgagaatcgaatcctcttctctggttttctccc 48246511  T
Q  174 cttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48246512 cttctcatctccctcggtttgtgttgacgaaccgttcttttctt 48246555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 36684402 - 36684518
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  36684402 tataaattgagagctcgggaatagtattcttgactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 36684501  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  36684502 gacgaatcgttcttttc 36684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 34317972 - 34318088
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||||    
T  34317972 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctgcccttctcatctcccgcgatttgtgtt 34318071  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  34318072 gacgaatcgttcttttc 34318088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 27711678 - 27711561
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  27711678 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 27711580  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  27711579 tgttgacgaaccgttcttt 27711561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 11250863 - 11250980
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| ||||||||| || |   ||| |||||||||||| |||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  11250863 tataaattgagagctcgtgaatagtattctttactccaaaattgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 11250961  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  11250962 tgttgacgaaccgttcttt 11250980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 37404190 - 37404269
Alignment:
Q  131 actccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct--cggtttgtgttgacgaaccgtt 209  Q
    |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||  ||||||||||||||||||||||    
T  37404190 actccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccggtttgtgttgacgaaccgtt 37404269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 37409277 - 37409390
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  37409277 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 37409375  T
Q  195 tgttgacgaaccgtt 209  Q
    |||||||||||||||    
T  37409376 tgttgacgaaccgtt 37409390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 27716798 - 27716681
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || ||||||||||||| |||||||| ||||| |||||||||||| || |||| |||||||    |||||||    
T  27716798 tataaattgagagctcgggaatagtattcttcactccaaaactgataatcgaatactcttatctggttttctctcc-tctcttctccctcccgcggtttg 27716700  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  27716699 tgttgacgaaccgttcttt 27716681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 5730608 - 5730569
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5730608 gctccgagattcccgcacacagagaccaagtctcacacgt 5730569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 21080768 - 21080911
Alignment:
Q  74 ggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccc 173  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  21080768 ggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcacttcaaaactgagaatcgaatcctcttctctggttttctccc 21080867  T
Q  174 cttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  21080868 cttctcatcttcctcggtttgtgttgacgaaccgttcttttctt 21080911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 2234364 - 2234502
Alignment:
Q  79 aaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttct 178  Q
    |||| |||| ||||||||||||||||||||||||||||||||   ||| || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2234364 aaacgaggtcaaatcccctctataaatagagagctcgggattagtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttct 2234463  T
Q  179 catctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2234464 catctccctcggtttgtgttgacgaaccgttcttttctt 2234502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 17495773 - 17495626
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||||||||||||||| |   ||| ||||||||||||| |||||| |||||||||||||||||||||    
T  17495773 cggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttc 17495674  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  17495673 tcgccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 17495626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 17557441 - 17557588
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||||||||||||||| |   ||| ||||||||||||| |||||| |||||||||||||||||||||    
T  17557441 cggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattctttactccaaaaccgagaattgaatcctcttctctggttttc 17557540  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  17557541 tcgccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 17557588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 19309336 - 19309481
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||||||||||||||| |   ||| || |||||||||| ||||||| ||||||||||||||||||||    
T  19309336 cggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcaaatcctcttctctggttttc 19309435  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttc 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19309436 tccccttctcatctccctcggtttgtgttgacgaactgttcttttc 19309481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 42572315 - 42572170
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| ||||  || || ||||||||||||||| ||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  42572315 cggcggagaaaacgaggtcgaaacctctctataaatagagaactcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 42572216  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42572215 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttc 42572170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 12934767 - 12934620
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| ||||  || |  ||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  12934767 cggcggagaaaacgaggtcgaaacatctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 12934668  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12934667 tccccttctcatctccctcggtttgtgttgatgaaccgttcttttctt 12934620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 43893239 - 43893092
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||| ||||||||||||||||||||| |   ||| || |||||||||  ||||||||||||||||||||||||||||    
T  43893239 cggcggagaaaacgaggaaaattccccgctataaatagagagctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctctggttttc 43893140  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43893139 tccccttctcatctccctcggtttgtgttgacgaatcgttcttttctt 43893092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 16539137 - 16539284
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||||||||||||||| |   ||| || |||||||||| ||||||  ||||||||||||||||||||    
T  16539137 cggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttc 16539236  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16539237 tcccattctcatctccctcggtttgtgttgacgaacagttcttttctt 16539284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 16626525 - 16626378
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||||||||||||||| |   ||| || |||||||||| ||||||  ||||||||||||||||||||    
T  16626525 cggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttc 16626426  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16626425 tcccattctcatctccctcggtttgtgttgacgaacagttcttttctt 16626378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 47176875 - 47177003
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||||||||  || || ||||||||||||||||||||||| | | ||| || |||||||||| || |||||||||||||||||||||||||    
T  47176875 cggcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgagattcttcactccaaaaccgataatcgaatcctcttctctggttttc 47176974  T
Q  170 tccccttctcatctccctcggtttgtgtt 198  Q
    |||||||||||||||||||||||||||||    
T  47176975 tccccttctcatctccctcggtttgtgtt 47177003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 32212439 - 32212525
Alignment:
Q  131 actccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32212439 actccaaaaccgagaatcgaatcctcttctctgattttctccccttctcatctccctcggtttgtgttgatgaaccgttcttttctt 32212525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 33238410 - 33238294
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  33238410 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 33238311  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  33238310 gacgaatcgttcttttc 33238294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 47994208 - 47994092
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  47994208 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 47994109  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  47994108 gacgaatcgttcttttc 47994092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 47999383 - 47999267
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  47999383 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 47999284  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  47999283 gacgaatcgttcttttc 47999267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 33243587 - 33243471
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  33243587 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 33243488  T
Q  199 gacgaaccgttcttttc 215  Q
    ||| || ||||||||||    
T  33243487 gacaaatcgttcttttc 33243471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 21080643 - 21080681
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacg 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21080643 gctccgagattcccgcacacggagaccaagtctcacacg 21080681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 2817872 - 2818019
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| | | ||| |||||||||||||  |||||||||||||||||||||||||||    
T  2817872 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgagattctttactccaaaaccaagaatcgaatcctcttctctggttttc 2817971  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817972 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 2818019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 34376299 - 34376152
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  34376299 cggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 34376200  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376199 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 34376152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 31981933 - 31981788
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| | ||  |||||||||||||||||||||||||||||||   ||| || |||||||||| ||||||||||| ||||||||||||||||    
T  31981933 cggcggagaaaacgaagtcgaatcccctctataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatactcttctctggttttc 31981834  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31981833 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttc 31981788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 34142459 - 34142312
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||| || |||||||| ||  ||| || |||||||||| ||||||||||||||||||||||||||||    
T  34142459 cggcggagaaaacgaggaaaattcccctctataaataaagtgctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 34142360  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142359 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 34142312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 34155075 - 34154928
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||  || ||||||||||||||| || |||||||| ||  ||| || |||||||||| ||||||||||||||||||||||||||||    
T  34155075 cggcggagaaaacgaggaaaattcccctctataaataaagtgctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 34154976  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34154975 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 34154928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 24191123 - 24191244
Alignment:
Q  96 ctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgt 195  Q
    ||||||||||||||||||||||| |   ||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24191123 ctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgt 24191222  T
Q  196 gttgacgaaccgttcttttctt 217  Q
    |||||||||||||| |||||||    
T  24191223 gttgacgaaccgtttttttctt 24191244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 24192220 - 24192341
Alignment:
Q  96 ctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgt 195  Q
    ||||||||||||||||||||||| |   ||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192220 ctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgt 24192319  T
Q  196 gttgacgaaccgttcttttctt 217  Q
    |||||||||||||| |||||||    
T  24192320 gttgacgaaccgtttttttctt 24192341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 22697930 - 22698046
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  22697930 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 22698029  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  22698030 gacgaatcgttcttttc 22698046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 22703106 - 22703223
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  22703106 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 22703204  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  22703205 tgttgacgaaccgttcttt 22703223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 29491008 - 29491094
Alignment:
Q  131 actccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttgtgttgacgaaccgttctttt 214  Q
    |||||||||||||||||| ||| |||||||||| |||| || || |||| |||||||    |||||||||||||||||||||||||||    
T  29491008 actccaaaactgagaatcaaatactcttctctgattttatctcc-tctcttctccctcccgcggtttgtgttgacgaaccgttctttt 29491094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 6728166 - 6728255
Alignment:
Q  72 gcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctc 161  Q
    ||||||||||| ||||  || || ||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||| ||||||    
T  6728166 gcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatccccttctc 6728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 21402064 - 21401979
Alignment:
Q  131 actccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctc----ggtttgtgttgacgaaccgttcttt 213  Q
    |||| |||||| |||||||||| ||||||| |||||||||| ||| ||| ||||||||    |||||||||||||||||||||||||    
T  21402064 actcaaaaactaagaatcgaatactcttctttggttttctctcct-ctcttctccctcctgcggtttgtgttgacgaaccgttcttt 21401979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 26709473 - 26709326
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||||| ||||||||    
T  26709473 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttc 26709374  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26709373 tccccttctcatctccctcggtttgtgttgatgaaccattcttttctt 26709326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 26979207 - 26979060
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||||| ||||||||    
T  26979207 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttc 26979108  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26979107 tccccttctcatctccctcggtttgtgttgatgaaccattcttttctt 26979060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 1413777 - 1413924
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||| || |||| |||| |||||||||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||||||| ||||||||||    
T  1413777 cggcgaagtaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttc 1413876  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1413877 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 1413924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 24776537 - 24776679
Alignment:
Q  73 cggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctcc 172  Q
    |||||||||| | ||  ||||||||||||||||||||||||| |||||   ||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  24776537 cggagaaaacgaagtcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctcc 24776636  T
Q  173 ccttctcatctccctcggtttgtgttgacgaaccgttcttttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24776637 ccttctcatctccctcggtttgtgttgacgaaccgttcttttc 24776679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 24771099 - 24771224
Alignment:
Q  90 aatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcg 189  Q
    ||||||||||||||||||||||||| |||||   ||| |||||||||||||  |||||| ||  ||||||||||||||||||||||||||||||||||||    
T  24771099 aatcccctctataaatagagagctcaggattggtattctttactccaaaaccaagaatcaaacactcttctctggttttctccccttctcatctccctcg 24771198  T
Q  190 gtttgtgttgacgaaccgttcttttc 215  Q
    ||||||||||||||||||||||||||    
T  24771199 gtttgtgttgacgaaccgttcttttc 24771224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 36254184 - 36254059
Alignment:
Q  92 tcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggt 191  Q
    |||||||||||||||||||||| |||| |   ||| || |||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||    
T  36254184 tcccctctataaatagagagcttgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctagttttctccctttctcatctccctcagt 36254085  T
Q  192 ttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||    
T  36254084 ttgtgttgacgaaccgttcttttctt 36254059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 17505308 - 17505191
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  17505308 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 17505210  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  17505209 tgttgacgaaccgttcttt 17505191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 17510413 - 17510296
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  17510413 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 17510315  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  17510314 tgttgacgaaccgttcttt 17510296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 41858941 - 41858831
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||   |||||| ||| || |||||||||||    
T  41858941 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttct---cttctc-tcttccgcggtttgtgtt 41858846  T
Q  199 gacgaaccgttcttt 213  Q
    |||||||||||||||    
T  41858845 gacgaaccgttcttt 41858831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 42019928 - 42019811
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  42019928 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 42019830  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||| ||||||    
T  42019829 tgttgacgaaccattcttt 42019811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 42024708 - 42024591
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || ||||||||| |||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  42024708 tataaattgagagctcgggaatagtattcttcactccaaaattgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 42024610  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||| ||||||||    
T  42024609 tgttgacgaatcgttcttt 42024591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 43580015 - 43579898
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || || ||||||||||||||||||| |||||||||| ||||||| || |||| |||||||    |||||||    
T  43580015 tataaattgagagctcgggaatagtatttttcacaccaaaactgagaatcgaatactcttctctgattttctctcc-tctcttctccctcccgcggtttg 43579917  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  43579916 tgttgacgaaccgttcttt 43579898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 26709584 - 26709545
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26709584 gctccgagattcccgcacacggagaccaagtctcacacgt 26709545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 26979318 - 26979279
Alignment:
Q  9 gctccgagattcccgcacacggagaccaagtctcacacgt 48  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26979318 gctccgagattcccgcacacggagaccaagtctcacacgt 26979279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 53797999 - 53797852
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||||||||  |||| || |||||||||| ||||||||||||||||||||||||||||    
T  53797999 cggcggataaaacgaggtcaaatcccctctataaatagagagctcgggattagcattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 53797900  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  53797899 tccccttctcatctccctcggtttgtgttgacgaactgttcttttctt 53797852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 51019098 - 51019245
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  51019098 cggcggagaaaacaaggtaaaatcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 51019197  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51019198 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 51019245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 9763762 - 9763889
Alignment:
Q  90 aatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcg 189  Q
    |||||||||||||||||||||||||||||||   ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9763762 aatcccctctataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttctcatctcccgcg 9763861  T
Q  190 gtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||    
T  9763862 gtttgtgttgacgaaccgttcttttctt 9763889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 41393613 - 41393468
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||||||||||||||||||||    
T  41393613 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 41393514  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||  ||||||||| |||||||||||||||||||||||||||||||    
T  41393513 tcccc--ctcatctccatcggtttgtgttgacgaaccgttcttttctt 41393468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 13711037 - 13710892
Alignment:
Q  72 gcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctc 171  Q
    ||||||||||||||||  || || ||||||||||||||||||||||| |   ||| || ||||||||||  |||||||||||||||||||||||||||||    
T  13711037 gcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13710938  T
Q  172 cccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13710937 cccttctcatctccctcggtttgtgttgacgaaccattcttttctt 13710892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 47046031 - 47046178
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| ||||  || || ||||||||||||||||||||||| |   ||| || |||||||||| |||||||||||| |||||||||||||||    
T  47046031 cggcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttc 47046130  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  47046131 tccccttctcatctccctcaggttgtgttgacgaaccgttcttttctt 47046178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 13695506 - 13695387
Alignment:
Q  96 ctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgt 195  Q
    ||||||||||||||||||||||| |   ||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13695506 ctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatactcttctctggttttctccccttctcatctccctcggtttgt 13695407  T
Q  196 gttgacgaaccgttcttttc 215  Q
    |||||| |||| ||||||||    
T  13695406 gttgacaaaccattcttttc 13695387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 39999477 - 39999361
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  39999477 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 39999378  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  39999377 gacgaatcgttcttttc 39999361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 40004435 - 40004319
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  40004435 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 40004336  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  40004335 gacgaatcgttcttttc 40004319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 54343611 - 54343495
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  54343611 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 54343512  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  54343511 gacgaatcgttcttttc 54343495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 54348765 - 54348649
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  54348765 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 54348666  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  54348665 gacgaatcgttcttttc 54348649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 36354521 - 36354434
Alignment:
Q  128 tttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttc 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||    
T  36354521 tttactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgttgacgaatcgttcttttc 36354434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 36359736 - 36359620
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||| ||| |   ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  36359736 tataaattgagagctcaggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 36359637  T
Q  199 gacgaaccgttcttttc 215  Q
     ||||| ||||||||||    
T  36359636 aacgaatcgttcttttc 36359620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 21299573 - 21299690
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| ||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  21299573 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 21299671  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  21299672 tgttgacgaaccgttcttt 21299690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 8985145 - 8985262
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  8985145 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 8985243  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  8985244 tgttgacgaaccgttcttt 8985262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 13700865 - 13700748
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  13700865 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 13700767  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  13700766 tgttgacgaaccgttcttt 13700748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 21304693 - 21304810
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  21304693 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 21304791  T
Q  195 tgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||    
T  21304792 tgttgacgaaccgttcttt 21304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 8980057 - 8980142
Alignment:
Q  131 actccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttgtgttgacgaaccgttcttt 213  Q
    |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    ||||||||||||||||||||||||||    
T  8980057 actccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttgtgttgacgaaccgttcttt 8980142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 54991795 - 54991714
Alignment:
Q  135 caaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttgtgttgacgaaccgttcttt 213  Q
    |||||||||||||||||| |||||||||||||||||| || |||| |||||||    ||||||||||||||||||||||||||    
T  54991795 caaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttgtgttgacgaaccgttcttt 54991714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 54990582 - 54990667
Alignment:
Q  131 actccaaaactgagaatcgaatcctcttctctggttttctcccct-tctcat--ctccctcggtttgtgttgacgaaccgttcttt 213  Q
    |||||||||||||||||| ||| ||||||||| |||||||| ||| |||  |  ||||| ||||||||||||||||||||||||||    
T  54990582 actccaaaactgagaatcaaatactcttctcttgttttctctcctctctactccctcccgcggtttgtgttgacgaaccgttcttt 54990667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 9763609 - 9763649
Alignment:
Q  9 gctccgagattcccgcacacgga-gaccaagtctcacacgt 48  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  9763609 gctccgagattcccgcacgcggaggaccaagtctcacacgt 9763649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 37380 - 37233
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||| | | ||| || |||||||||| ||||||||||||||||||||||||||||    
T  37380 cggcggagaaaacgaggtcaaatcctctctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttc 37281  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  37280 tccccttctcatcttcctcggtttgtgttgacgaaccgttcttttctt 37233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 37513 - 37473
Alignment:
Q  9 gctccgagattcccgcacacgga-gaccaagtctcacacgt 48  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  37513 gctccgagattcccgcacgcggaggaccaagtctcacacgt 37473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 8933 - 9080
Alignment:
Q  70 cggcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttc 169  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||| |   ||| || |||||||||  ||||||||||||||||||||| ||||||    
T  8933 cggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaacgagaatcgaatcctcttctctagttttc 9032  T
Q  170 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9033 tccccttctcatctccctcggtttgtgttgacgaactgttcttttctt 9080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 18920 - 19062
Alignment:
Q  73 cggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctcc 172  Q
    |||||||||| | ||  ||||||||||||||||||||||||| |||||   ||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  18920 cggagaaaacgaagtcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctcc 19019  T
Q  173 ccttctcatctccctcggtttgtgttgacgaaccgttcttttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19020 ccttctcatctccctcggtttgtgttgacgaaccgttcttttc 19062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 13466 - 13611
Alignment:
Q  72 gcggagaaaacaaggtgaaatcccctctataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctc 171  Q
    ||||||||||||||||  || || ||||||||||||||||||||||| |   ||| || ||||||||||  |||||||||||||||||||||||||||||    
T  13466 gcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctc 13565  T
Q  172 cccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  13566 cccttctcatctccctcggtttgtgttgacgaaccattcttttctt 13611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 3432 - 3316
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  3432 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 3333  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  3332 gacgaatcgttcttttc 3316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 81103 - 81219
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||    
T  81103 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 81202  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  81203 gacgaatcgttcttttc 81219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 26781 - 26665
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || || ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||    
T  26781 tataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggttttctccccttctcatctcccgcgatttgtgtt 26682  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  26681 gacgaatcgttcttttc 26665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 31953 - 31837
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 198  Q
    ||||||| |||||||||||| |   ||| || || ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||    
T  31953 tataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggttttctccccttctcatctcccgcgatttgtgtt 31854  T
Q  199 gacgaaccgttcttttc 215  Q
    |||||| ||||||||||    
T  31853 gacgaatcgttcttttc 31837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 3918 - 3805
Alignment:
Q  99 tataaatagagagctcgggatttacattatttactccaaaactgagaatcgaatcctcttctctggttttctccccttctcatctccct----cggtttg 194  Q
    ||||||| |||||||||||| |   ||| || |||||||||||||||||||||| |||||||||||||||||| || |||| |||||||    |||||||    
T  3918 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 3820  T
Q  195 tgttgacgaaccgtt 209  Q
    |||||||||||||||    
T  3819 tgttgacgaaccgtt 3805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University