View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6715_low_3 (Length: 504)
Name: NF6715_low_3
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 33599012 - 33598519
Alignment:
| Q |
1 |
ttcttaagcttactctgtattttaaggtaatacactacactctgatacttacatgtttatattagatttagattgttggaaattgaaattatattatatt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33599012 |
ttcttaagcttactccgtattttaaggtaatacactacactctgatacttacatgtttatattagatttagattgttggaaattgaaattatattatatt |
33598913 |
T |
|
| Q |
101 |
taaattgttggaaattgaaacttcga-ttttttctggaatactgtcagctggtgaaaaagcttaaacgatatctaaggttcgatgaccaattccattttg |
199 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
33598912 |
taaatttttggaaattgaaactttgatttttttcttgaatactttcagctggtgaaaaagcttaaacgatgcctaaggttcgatgaccaattccaatttg |
33598813 |
T |
|
| Q |
200 |
gttttgttgctaattctaatgttgcaaatgttgtccgtgtttccgaccgtgcgat----------tttacacggattttaattgagctgttggatggatt |
289 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
33598812 |
gtttcgttgctaattctaatgttgcaaatgctgtccgtgtttccgaccgtgcgattatacagtggtttacacggattttaattgagctgt----tggatt |
33598717 |
T |
|
| Q |
290 |
aagtcacagaattatatttgactgttcgtgtacatattgatttgatgtataattttttagtgggagaattatatcagatttaagccaatattctaacttt |
389 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33598716 |
gagtcacagaattatatttgactgtttgtgtacatattgatttgatgtataatttttgagtgggagaattatatcagatttaagccaatattctaacttt |
33598617 |
T |
|
| Q |
390 |
tcaggaaaagtctgttattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttggatattaagtggtacattttat |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33598616 |
tcaggaaaagtctgttattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttagatattaagtggtacattttat |
33598519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 405 - 487
Target Start/End: Complemental strand, 47072525 - 47072443
Alignment:
| Q |
405 |
tattacaattagagacagccaacctttcttctctgtatagatacttgatccacaatccttggatattaagtggtacattttat |
487 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
47072525 |
tattacaattagagacagccaaccgttcttctctgtatagatacttgatcaacaatccttagatattaagtggtacattttat |
47072443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 18232660 - 18232721
Alignment:
| Q |
424 |
caacctttcttctctgtatagatacttgatccacaatccttggatattaagtggtacatttt |
485 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
18232660 |
caaccttttttctctctatagatagttgatccacaatccttagattttaagtggtacatttt |
18232721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University