View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_low_6 (Length: 457)
Name: NF6715_low_6
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 30943211 - 30942805
Alignment:
| Q |
19 |
gtttgaaattgactcataaaatctaagattttactatctgtactagttccactactcatcgaagctaaatatcatctctaagtttcatgtactcatatcc |
118 |
Q |
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| T |
30943211 |
gtttgaaattgactcataaaatctaagattttactatctgtactagttccactactcatcgaagctaaatatcatctctaagtttcatgtactcatatcc |
30943112 |
T |
|
| Q |
119 |
caatgagcaactttcaagagatggatatccttttcttttcttatattgaaacgtgtgcttcaaccattacagtgtaatttatttttaattcttaagttgc |
218 |
Q |
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| T |
30943111 |
caatgagcaactttcaagagatggatatccttctcttttcttatattgaaacatgtgtttcaaccattaaagtgtaatttatttttaattcttaagttgc |
30943012 |
T |
|
| Q |
219 |
agaatttgatccaaacatcttttaaacgaggagaactacaaaaccaaggacccatcatattgaaatatattgaagttttttatatctgtctttctaaggg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
30943011 |
agaatttgatccaaacatcttttaaacgaggagaactacaaaaccaaggactc---------------attgaagttttttatatctgtctttctaaggg |
30942927 |
T |
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| Q |
319 |
taatagtagaaggattcattttggtttggagcctcccaaattccaggtaattt-ctcaacttttttctttgtatgagttttctaatcctccttctaactt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30942926 |
taatagtagaaggattcattttggtttggagcctcccaaattccaggtaatttgctcaacttatttctttgtatgagttttctaatcctccttctaactt |
30942827 |
T |
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| Q |
418 |
tctatacaccgcagaatgttct |
439 |
Q |
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| T |
30942826 |
tctatacaccgcagaatgttct |
30942805 |
T |
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Back To:
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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 27562555 - 27562644
Alignment:
| Q |
18 |
ggtttgaaattgactcat-aaaatctaagattttactatctgtactagttccactactcatcgaagctaaatatcatctctaagtttcat |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||| || |||| ||| |||| |||||| |
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| T |
27562555 |
ggtttgaaattgactcatgaaaatctaagattttactatctatactagttacactactcatccaagttagatattatcactaaatttcat |
27562644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 29751120 - 29751209
Alignment:
| Q |
19 |
gtttgaaattgactcat-aaaatctaagattttactatctgtactagttccactactcatcgaagctaaatatcatctctaagtttcatg |
107 |
Q |
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|||||||| ||||||| ||||| ||||||||||| ||| ||||||||||| |||||||| ||| |||||||| |||||| ||||||| |
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| T |
29751120 |
gtttgaaagggactcatgaaaataaaagattttactttctatactagttccattactcatccaagttaaatatctactctaaatttcatg |
29751209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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