View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6715_low_8 (Length: 441)
Name: NF6715_low_8
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6715_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 43234217 - 43234637
Alignment:
| Q |
18 |
ctactaactagatagaattgtttaagtaggaaatcttggaactttttcaagtgttttgttctgttgaagtcattttcttgaaaaaattaattggaataag |
117 |
Q |
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| T |
43234217 |
ctactaactagatagaattgtttaagtaggaaatcttggaactttttcaagtgttttgttctgttgaagtcattttcttgaaaaaattaattggaataag |
43234316 |
T |
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| Q |
118 |
aaaagggtgagacaaccatcagcaagcaaatcgagtcccatgataacaatattgaaatggatagagcacacatatgcaaagggaccatacattgccactt |
217 |
Q |
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| T |
43234317 |
aaaagggtgagacaaccatcagcaagcaaatcgagtcccatgataacaatattgaaatggatagagcacacatatgcaaagggaccatacattgccactt |
43234416 |
T |
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| Q |
218 |
acaaaatccatttttatattgtgatgttgtcacacccataaacatcaaagagaatgagttagtttcagtagagacccttgcagtttcttagatgtgatat |
317 |
Q |
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| T |
43234417 |
acaaaatccatttttatattgtgatgttgtcacacccataaacatcaaagagaatgagttagtttcagtagagacccttgcagtttcttagatgtgatat |
43234516 |
T |
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| Q |
318 |
gtgccacttagatatatttggtaattagttagttcaaaatcaacatatatataatcccaaacccatttaggagacaccagtgggggtttgtacatgtttt |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
43234517 |
gtgccacttagatatatttgg---ttagttagttcaaaatcaacatatatataatcccaaacccatttaggagacaccggtaggggtttgtacatgtttt |
43234613 |
T |
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| Q |
418 |
gccaattgaaatatatatcttttt |
441 |
Q |
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| T |
43234614 |
gccaattgaaatatctatcttttt |
43234637 |
T |
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