View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6715_low_9 (Length: 402)

Name: NF6715_low_9
Description: NF6715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6715_low_9
NF6715_low_9
[»] chr8 (4 HSPs)
chr8 (3-282)||(43999327-43999606)
chr8 (333-384)||(43999659-43999710)
chr8 (1-36)||(17955884-17955919)
chr8 (1-46)||(24884667-24884712)
[»] chr5 (9 HSPs)
chr5 (80-281)||(42212460-42212661)
chr5 (1-52)||(26709050-26709102)
chr5 (1-52)||(26978784-26978836)
chr5 (1-36)||(1414146-1414181)
chr5 (1-36)||(36253791-36253826)
chr5 (1-36)||(42019538-42019573)
chr5 (58-108)||(42212662-42212712)
chr5 (7-36)||(41853514-41853543)
chr5 (7-36)||(41858559-41858588)
[»] chr3 (6 HSPs)
chr3 (7-52)||(34129270-34129315)
chr3 (1-52)||(17364012-17364063)
chr3 (7-52)||(17357785-17357830)
chr3 (1-40)||(54270605-54270644)
chr3 (1-36)||(17368684-17368719)
chr3 (7-52)||(10321390-10321436)
[»] chr7 (5 HSPs)
chr7 (1-52)||(2234725-2234776)
chr7 (1-52)||(21081136-21081188)
chr7 (7-40)||(12934359-12934392)
chr7 (1-46)||(16539507-16539552)
chr7 (1-46)||(16626110-16626155)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-46)||(36965-37010)
[»] chr4 (8 HSPs)
chr4 (1-46)||(53797584-53797629)
chr4 (1-36)||(8980380-8980415)
chr4 (1-36)||(8985500-8985535)
chr4 (1-36)||(13700475-13700510)
chr4 (1-36)||(21299928-21299963)
chr4 (1-36)||(21305048-21305083)
chr4 (1-36)||(41393210-41393245)
chr4 (1-36)||(51019468-51019503)
[»] chr1 (7 HSPs)
chr1 (1-46)||(5730060-5730105)
chr1 (1-46)||(3584556-3584601)
chr1 (8-47)||(5724933-5724972)
chr1 (1-36)||(27716408-27716443)
chr1 (1-36)||(37404511-37404546)
chr1 (1-36)||(37409632-37409667)
chr1 (1-46)||(48246771-48246816)
[»] chr6 (4 HSPs)
chr6 (7-40)||(2818248-2818281)
chr6 (1-36)||(21396664-21396699)
chr6 (1-36)||(22703461-22703496)
chr6 (1-36)||(29491332-29491367)
[»] scaffold0594 (1 HSPs)
scaffold0594 (1-36)||(9303-9338)
[»] scaffold0517 (1 HSPs)
scaffold0517 (1-36)||(3528-3563)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-36)||(31510-31545)
[»] chr2 (3 HSPs)
chr2 (1-36)||(28751824-28751859)
chr2 (1-36)||(40518567-40518602)
chr2 (7-52)||(4163529-4163575)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 43999327 - 43999606
Alignment:
Q  3 cccagtaatagtttcaaagctctgtcgtaattttaaattccaaagcaacagtcgtgccatatagaacttctttcttaaagagatttttctccaaagtgca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43999327 cccagtaatagtttcaaagctctgtcgtaattttaaattccaaaacaacagtcgtgccatatagaacttctttcttaaagagatttttctccaaagtgca 43999426  T
Q  103 aaatttggttgtcgtgaaattacatggnnnnnnnctccaaagaaataaaagaaaacaataaagctatgttggcaaagagtggaagctatcaagctatgga 202  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43999427 aaatttggttgtcgtgaaattacatggtttttttctccaaagaaataaaagaaaacaataaagctatgttggcaaagagtggaagctatcaagctatgaa 43999526  T
Q  203 attacagcaacttcttgtattaatttagaattggaacttatcgctaatcaaaataattagataacccgtgttttaccaac 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43999527 attacagcaacttcttgtattaatttagaattggaacttatcgctaatcaaaataattagataacccgtgttttaccaac 43999606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 43999659 - 43999710
Alignment:
Q  333 cactttgatgagatgatcagatatcttttcaaacttaatcagaagttgtgat 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43999659 cactttgatgagatgatcagatatcttttcaaacttaatcagaagttgtgat 43999710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17955884 - 17955919
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  17955884 accccggtaatagtttcaaagctctgtcgtaatttt 17955919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24884712 - 24884667
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||| |||||||||||||||||||| |||||||| ||||| ||||    
T  24884712 accccggtaatagtttcaaagctctgccgtaatttcaaattacaaa 24884667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 80 - 281
Target Start/End: Complemental strand, 42212661 - 42212460
Alignment:
Q  80 aagagatttttctccaaagtgcaaaatttggttgtcgtgaaattacatggnnnnnnnctccaaagaaataaaagaaaacaataaagctatgttggcaaag 179  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  42212661 aagagatttttctccaatatccaaaatttggttgtagtgaaattacatggtttttttctccaaagaaataaaagaaaacaataaagctatgttggcaaag 42212562  T
Q  180 agtggaagctatcaagctatggaattacagcaacttcttgtattaatttagaattggaacttatcgctaatcaaaataattagataacccgtgttttacc 279  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||    
T  42212561 agtggaagctatcaagctatggagttacagtagcttcttgtattaatttagaattggaacttatcgctaatcaaaataattagataacctatgttttccc 42212462  T
Q  280 aa 281  Q
    ||    
T  42212461 aa 42212460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26709102 - 26709050
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaa-ttttaaattccaaagcaaca 52  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  26709102 accccggtaatagtttcaaagctctgtcgtaatttttaaattccaaaacaaca 26709050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26978836 - 26978784
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaa-ttttaaattccaaagcaaca 52  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  26978836 accccggtaatagtttcaaagctctgtcgtaatttttaaattccaaaacaaca 26978784  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1414146 - 1414181
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1414146 accccagtaatagtttcaaagctttgtcgtaatttt 1414181  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36253826 - 36253791
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  36253826 accccggtaatagtttcaaagctctgtcgtaatttt 36253791  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42019573 - 42019538
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42019573 accccggtaatagtttcaaagctctgtcgtaatttt 42019538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 42212712 - 42212662
Alignment:
Q  58 gccatatagaacttctttcttaaagagatttttctccaaagtgcaaaattt 108  Q
    |||||||| ||||||||||||||||| |||||||||||   ||||||||||    
T  42212712 gccatataaaacttctttcttaaagatatttttctccattctgcaaaattt 42212662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 41853543 - 41853514
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||||||||||||||||||||||||||||    
T  41853543 gtaatagtttcaaagctctgtcgtaatttt 41853514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 41858588 - 41858559
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||||||||||||||||||||||||||||    
T  41858588 gtaatagtttcaaagctctgtcgtaatttt 41858559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 34129270 - 34129315
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaattttaaattccaaagcaaca 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34129270 gtaatagtttcaaagctctgtcgtaattttaaattccaaagcaaca 34129315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17364063 - 17364012
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaagcaaca 52  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  17364063 accccggtaatagtttcaaagctctgtcgtaattttaaattccaaaacaaca 17364012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 17357830 - 17357785
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaattttaaattccaaagcaaca 52  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||    
T  17357830 gtaatagtttcaaagctttgtcgtaattttaaattccaaaacaaca 17357785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 54270644 - 54270605
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaat 40  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  54270644 accccggtaatagtttcaaagctctgtcgtaattttaaat 54270605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17368719 - 17368684
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  17368719 accccggtaatagtttcaaagctctgtcgtaatttt 17368684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 10321436 - 10321390
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaatttt-aaattccaaagcaaca 52  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||||    
T  10321436 gtaataatttcaaagctctgtcgtaattttcaaattccaaaacaaca 10321390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2234725 - 2234776
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaagcaaca 52  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  2234725 accccggtaatagtttcaaagctctgtcgtaattttaaaatccaaaacaaca 2234776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21081136 - 21081188
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaa-ttttaaattccaaagcaaca 52  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  21081136 accccggtaatagtttcaaagctctgtcgtaatttttaaattccaaaacaaca 21081188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 12934392 - 12934359
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaattttaaat 40  Q
    ||||||||||||||||||||||||||||||||||    
T  12934392 gtaatagtttcaaagctctgtcgtaattttaaat 12934359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16539507 - 16539552
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||    
T  16539507 accccggtaatagtttcaaagctctgtcgtaacttcaaattacaaa 16539552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16626155 - 16626110
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||    
T  16626155 accccggtaatagtttcaaagctctgtcgtaacttcaaattacaaa 16626110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37010 - 36965
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  37010 accccagtaatagtttcaaagctctgtcgtaatttcaaattacaaa 36965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 53797629 - 53797584
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||    
T  53797629 accccggtaatagtttcaaagctctgtcgtaattttaaaatccaaa 53797584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8980380 - 8980415
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8980380 accccggtaatagtttcaaagctctgtcgtaatttt 8980415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8985500 - 8985535
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8985500 accccggtaatagtttcaaagctctgtcgtaatttt 8985535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13700510 - 13700475
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  13700510 accccggtaatagtttcaaagctctgtcgtaatttt 13700475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21299928 - 21299963
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21299928 accccggtaatagtttcaaagctctgtcgtaatttt 21299963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21305048 - 21305083
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21305048 accccggtaatagtttcaaagctctgtcgtaatttt 21305083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41393245 - 41393210
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41393245 accccggtaatagtttcaaagctctgtcgtaatttt 41393210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 51019468 - 51019503
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  51019468 accccggtaatagtttcaaagctctgtcgtaatttt 51019503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5730105 - 5730060
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||    
T  5730105 accccggtaatagtttcaaagctctgtcgtaattttaaaatccaaa 5730060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3584601 - 3584556
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||    
T  3584601 accccggtaatagtttcaaagctctgtcgtaattttacaatccaaa 3584556  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 5724972 - 5724933
Alignment:
Q  8 taatagtttcaaagctctgtcgtaattttaaattccaaag 47  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  5724972 taataatttcaaagctctgtcgtaattttaaaatccaaag 5724933  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27716443 - 27716408
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27716443 accccggtaatagtttcaaagctctgtcgtaatttt 27716408  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37404511 - 37404546
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37404511 accccggtaatagtttcaaagctctgtcgtaatttt 37404546  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37409632 - 37409667
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37409632 accccggtaatagtttcaaagctctgtcgtaatttt 37409667  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48246771 - 48246816
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaattttaaattccaaa 46  Q
    ||||| ||||||||||||||||||| ||||||||| ||||| ||||    
T  48246771 accccggtaatagtttcaaagctctatcgtaatttcaaattacaaa 48246816  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 2818248 - 2818281
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaattttaaat 40  Q
    ||||||||||||||||||||||||||||||||||    
T  2818248 gtaatagtttcaaagctctgtcgtaattttaaat 2818281  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21396699 - 21396664
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21396699 accccggtaatagtttcaaagctctgtcgtaatttt 21396664  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22703461 - 22703496
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22703461 accccggtaatagtttcaaagctctgtcgtaatttt 22703496  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29491332 - 29491367
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29491332 accccggtaatagtttcaaagctctgtcgtaatttt 29491367  T

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Target: scaffold0594 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9303 - 9338
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9303 accccggtaatagtttcaaagctctgtcgtaatttt 9338  T

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Target: scaffold0517 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3563 - 3528
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  3563 accccggtaatagtttcaaagctctgtcgtaatttt 3528  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31545 - 31510
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31545 accccggtaatagtttcaaagctctgtcgtaatttt 31510  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28751824 - 28751859
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28751824 accccggtaatagtttcaaagctctgtcgtaatttt 28751859  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40518567 - 40518602
Alignment:
Q  1 accccagtaatagtttcaaagctctgtcgtaatttt 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  40518567 accccggtaatagtttcaaagctctgtcgtaatttt 40518602  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 4163529 - 4163575
Alignment:
Q  7 gtaatagtttcaaagctctgtcgtaatttt-aaattccaaagcaaca 52  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||    
T  4163529 gtaatagtttcaaagctctgtcgtaattttcaaattcaaaaacaaca 4163575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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