View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6718_high_4 (Length: 569)

Name: NF6718_high_4
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6718_high_4
NF6718_high_4
[»] chr4 (2 HSPs)
chr4 (20-330)||(14943819-14944129)
chr4 (313-413)||(19856017-19856117)
[»] chr1 (3 HSPs)
chr1 (26-417)||(21306963-21307354)
chr1 (186-413)||(22611575-22611802)
chr1 (22-400)||(20863638-20864018)
[»] chr3 (2 HSPs)
chr3 (95-420)||(4771069-4771394)
chr3 (20-79)||(4770797-4770856)
[»] scaffold2063 (1 HSPs)
scaffold2063 (31-420)||(573-962)
[»] chr5 (3 HSPs)
chr5 (201-420)||(19220519-19220738)
chr5 (20-408)||(20062020-20062408)
chr5 (20-420)||(21379943-21380337)
[»] chr6 (1 HSPs)
chr6 (152-420)||(14635049-14635317)
[»] chr7 (2 HSPs)
chr7 (163-420)||(16904675-16904932)
chr7 (20-398)||(16053753-16054131)
[»] scaffold0142 (1 HSPs)
scaffold0142 (277-404)||(18343-18470)
[»] chr2 (2 HSPs)
chr2 (301-404)||(17163777-17163880)
chr2 (20-80)||(24987369-24987429)
[»] scaffold0054 (1 HSPs)
scaffold0054 (33-92)||(79582-79641)
[»] chr8 (1 HSPs)
chr8 (286-365)||(21331880-21331959)
[»] scaffold1720 (1 HSPs)
scaffold1720 (313-362)||(293-342)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 14943819 - 14944129
Alignment:
Q  20 atctggggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgctttttccttctc 119  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14943819 atctggggcacaacattacctcataattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgcttttgccttctc 14943918  T
Q  120 atcaaatagagattctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaat 219  Q
    || ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||    
T  14943919 atgaaacagagattctgaaatgatttcgtcagcatctttggggcttcgagaaacttctaccatatgacattgagcaacatcatcttttgcttcgacaaat 14944018  T
Q  220 agcttttcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgca 319  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  14944019 agcttttcaacagcgtccacaatggcgtccaccacgttacaacttgcaacttcagtgtacattgcatcgacatcttttaagggatcaacattcacttgca 14944118  T
Q  320 tctgaggcttt 330  Q
    |||||||||||    
T  14944119 tctgaggcttt 14944129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 19856017 - 19856117
Alignment:
Q  313 acttgcatctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaatgtgaagtcctat 412  Q
    |||||||| ||||||||||||||||||| |||||||||||| |||||||||| | | ||||||||  ||||||||||||||||||||||||| ||| |||    
T  19856017 acttgcatttgaggctttgttttatctctaaacttcagcctaccttcattcagagcactttgcaccgagtccctgaaaagtacacaatgtgaggtcttat 19856116  T
Q  413 g 413  Q
    |    
T  19856117 g 19856117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 26 - 417
Target Start/End: Complemental strand, 21307354 - 21306963
Alignment:
Q  26 ggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgctttttccttctcatcaaa 125  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||| || |||| |||||||||| ||    
T  21307354 ggcacaacattacctcagaattcttcaatctgcaacaattgaggaaatcaatcagctcctcttcaaccatgggataagttgtttttgccttctcatcgaa 21307255  T
Q  126 tagagattctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaatagcttt 225  Q
      ||  |||||||| |||||| |||||||||||||| |||| ||||||||||||||| ||| |||   |||||||||| ||| |||  | | |||| |||    
T  21307254 ctgaagttctgaaaagatttcatcagcatctttgggacttccagaaacttctaccatctgatattagccaacatcatcattttctttgacagatagtttt 21307155  T
Q  226 tcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgcatctgag 325  Q
    || |||  ||  |||||||| ||||||| ||||||||||||||||| | |||||||| |||||||||||||||| ||||| |||| ||||||||| ||||    
T  21307154 tccacaacgtatgcaatggcttccaccatgttacaacttgcaacttcattgtacattacgtcgacatcttttaatggatccacatccacttgcatttgag 21307055  T
Q  326 gctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaatgtgaagtcctatgaccc 417  Q
    || ||||||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  21307054 gcgttgttttgtctccaaactttagcctgccttcattcagacctctttgcactaagtccctgaagagtacacaatgtgaagtcttatgaccc 21306963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 186 - 413
Target Start/End: Complemental strand, 22611802 - 22611575
Alignment:
Q  186 acatttagcaacatcatcttttgcttcaaaaaatagcttttcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcg 285  Q
    ||||| ||||| ||||  ||||||||||| | |||  ||||| |||| |||| |||| || ||||| ||||||||| ||||||||| | |||||||||      
T  22611802 acattaagcaatatcaagttttgcttcaacagatatattttcgacagcgtccacaatcgcttccactacgttacaagttgcaacttcagtgtacattgga 22611703  T
Q  286 tcgacatcttttaagggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccc 385  Q
    | ||| || ||||||||||| |||| ||||||||| ||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||| |||||||    
T  22611702 ttgacgtcctttaagggatctacatccacttgcatttgaggctttgttttatctctaaactccagcttgccttcattcagaactctttgcaccaagtccc 22611603  T
Q  386 tgaaaagtacacaatgtgaagtcctatg 413  Q
       |||||||||||||||| ||| ||||    
T  22611602 gagaaagtacacaatgtgaggtcttatg 22611575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 400
Target Start/End: Original strand, 20863638 - 20864018
Alignment:
Q  22 ctggggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgctttttccttctcat 121  Q
    |||||||| ||||| |||| ||| || ||||| |||||   |||||| ||||||| ||  |  ||||||| ||||||||||||  ||||  |||||| ||    
T  20863638 ctggggcacaacatgaccttagagtttttcaacctgcactaattgagaaaatcgaacagttattcttcaggcatgggataagccactttcgccttctaat 20863737  T
Q  122 caaatagagattctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaatag 221  Q
    ||||   ||||||||| |||| ||| | | ||| |||| ||  || |||| |||||||||| || |||| ||| |||| | ||||| |||||| | |  |    
T  20863738 caaactaagattctgagatgacttcattatcatgtttgaggtgtccagaagcttctaccatctgccattcagcgacataaactttttcttcaacataccg 20863837  T
Q  222 cttttcaacagtgtccgcaat---ggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgc 318  Q
     ||||| ||||  ||| ||||   ||| ||||| |||||||||| | ||||||   ||||||||||||| || ||||||| || ||| |||| |||||||    
T  20863838 tttttcgacagcatccacaataatggcttccactacgttacaacctacaacttgtgtgtacattgcgtcaacgtcttttagggcatccacatccacttgc 20863937  T
Q  319 atctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaat 400  Q
    || |||||||||||||||||||||||||||||| |||||| ||||| | |||||| |||  ||| ||| |||||||||||||    
T  20863938 atatgaggctttgttttatctccaaacttcagcttgccttgattcatagctctttccacctagt-cctaaaaagtacacaat 20864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 95 - 420
Target Start/End: Original strand, 4771069 - 4771394
Alignment:
Q  95 tgggataagctgctttttccttctcatcaaatagagattctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagc 194  Q
    ||||||||| ||||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||| | ||| ||||||||||||||| ||||||| |||    
T  4771069 tgggataagttgcttttgccttctcattaaatcgaggttctaaaatgatttcgtcagcatctttggagtttccagaaacttctaccatttgacattcagc 4771168  T
Q  195 aacatcatcttttgcttcaaaaaatagcttttcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatct 294  Q
    ||||||||||||| |||| | |||||||||||||||||||||| ||||||| ||||| | ||||||||||||||| | |  |||||||||||||||||||    
T  4771169 aacatcatctttttcttcgacaaatagcttttcaacagtgtccacaatggcttccactatgttacaacttgcaacatcagcgtacattgcgtcgacatct 4771268  T
Q  295 tttaagggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagta 394  Q
    ||||||||||| |||| ||||| ||| ||||||||| |||||||||||||||| ||| |||||||||||| | |||||||||| | |||| |||||  ||    
T  4771269 tttaagggatcgacatccactttcatttgaggctttcttttatctccaaactttagcttgccttcattcagagctctttgcaccatgtccttgaaatata 4771368  T
Q  395 cacaatgtgaagtcctatgacccaaa 420  Q
    |||||| ||||||| |||| ||||||    
T  4771369 cacaatatgaagtcttatgtcccaaa 4771394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 4770797 - 4770856
Alignment:
Q  20 atctggggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatca 79  Q
    |||| ||||| |||||||||| ||||||||||||| |||||| ||||| |||||| ||||    
T  4770797 atctagggcacaacattacctaagaattcttcaatatgcaacaattgacgaaatcaatca 4770856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2063 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: scaffold2063
Description:

Target: scaffold2063; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 31 - 420
Target Start/End: Complemental strand, 962 - 573
Alignment:
Q  31 aacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgctttttccttctcatcaaatagag 130  Q
    |||||||||||||| ||||| ||| | |||| |||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||||| ||  ||     
T  962 aacattacctcagagttctttaatttacaacaattgaggaaatcaatcagctcctcttcatccatgggataagttgctttttccttctcatcgaaatgaa 863  T
Q  131 attctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaatagcttttcaac 230  Q
     ||||||| |||||| || |||||||||||| |||| ||||||||| ||||| ||||||| | ||| ||||||||| ||||| |   |||| |||||||     
T  862 gttctgaagtgattttgttagcatctttgggacttccagaaacttcaaccatctgacattcaacaatatcatctttcgcttcgacggatagtttttcaat 763  T
Q  231 agtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgcatctgaggcttt 330  Q
    ||  || |||||||| ||||| ||||| |||||||||||||   |||||||||||||||| ||||||||  ||||| |||  ||||||||||| || |||    
T  762 agcatctgcaatggcttccactacgttgcaacttgcaacttctgtgtacattgcgtcgacgtcttttaatagatcaccatctacttgcatctggggtttt 663  T
Q  331 gttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaatgtgaagtcctatgacccaaa 420  Q
    | |||||||||||||   ||||| ||||| || | | ||||||| |||||||| |||||||||||||||||||||| | | |||||||||    
T  662 gctttatctccaaacccaagcctaccttcgtttagacctctttgtactaagtctctgaaaagtacacaatgtgaagacttgtgacccaaa 573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 201 - 420
Target Start/End: Complemental strand, 19220738 - 19220519
Alignment:
Q  201 atcttttgcttcaaaaaatagcttttcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaag 300  Q
    ||||| |||||| | | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||| |||| ||| |||||||||    
T  19220738 atcttctgcttcgacatatagcttttcaacagtgtctgcaatggcttccaccacgttacaacttgcaacttcagtgtacatcgcgttgacgtcttttaag 19220639  T
Q  301 ggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaat 400  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||| ||| | |||||||||| ||||||||||||||||||||||    
T  19220638 ggatcaacatccacttgcatctgaggctttgttttgtctccaaactttagccttccttcactcagagctctttgcaccaagtccctgaaaagtacacaat 19220539  T
Q  401 gtgaagtcctatgacccaaa 420  Q
    |||||||| |||| ||||||    
T  19220538 gtgaagtcttatgtcccaaa 19220519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 20062408 - 20062020
Alignment:
Q  20 atctggggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgctttttccttctc 119  Q
    |||||||||| |||||||||| ||| ||||||||||| |||||||| |||||||| |||||||||| ||||| | ||||||||||| |||||||||||||    
T  20062408 atctggggcacaacattaccttagagttcttcaatctacaacgattaaggaaatcaatcaactcctgttcagtcgtgggataagcttctttttccttctc 20062309  T
Q  120 atcaaa-tagagattctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaa 218  Q
    ||  || | ||| ||| | | ||||||||||| || | |||||  ||| ||||||||||||||| ||| ||| | ||||||||||||||||||| | | |    
T  20062308 attgaactggag-ttcaggagtgatttcgtcaacacccttgggatttccagaaacttctaccatctgaaattcaacaacatcatcttttgcttcgacata 20062210  T
Q  219 tagcttttcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgc 318  Q
    ||| ||||||||||  || |||||||| ||||| ||||| || ||||||||||   ||||||| || |||||| | ||||| |||||| |||  ||||||    
T  20062209 tagtttttcaacagcatctgcaatggcttccactacgttgcagcttgcaacttctgtgtacatcgcatcgacaccctttaatggatcaccatctacttgc 20062110  T
Q  319 atctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaatgtgaagtc 408  Q
    ||||| || |||| ||||||||||||  ||| ||| ||||| || | | |||||||||||||||||||||||||||||| ||||||||||    
T  20062109 atctggggttttgctttatctccaaatctcatcctaccttcgtttagacctctttgcactaagtccctgaaaagtacacgatgtgaagtc 20062020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 21379943 - 21380337
Alignment:
Q  20 atctggggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgctttttccttctc 119  Q
    ||||| |||||| ||| |||| ||| |||||||| || ||||||||||||||||| ||||  | ||||||||||||  | |||||  |      ||||||    
T  21379943 atctgtggcataccataaccttagagttcttcaacctacaacgattgaggaaatcaatcagtttctcttcagccataaggtaagccac------cttctc 21380036  T
Q  120 atcaaatagagattctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaat 219  Q
    ||||||| |||| ||| |||||| ||| ||||||  |||||||  || |||||| || ||||| ||||||| |||||||||| |||||||||||| | |     
T  21380037 atcaaattgagactctcaaatgacttcatcagcacttttggggtctccagaaacctccaccatctgacattcagcaacatcaacttttgcttcaacagac 21380136  T
Q  220 agcttttcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgca 319  Q
    | |||||| |||   ||  ||||||| ||||  || || |||  |||||||| | |||||||||| |||||| |||| |   ||||||||| | ||  ||    
T  21380137 aacttttcgacaacatcaacaatggcctccataacattgcaatctgcaacttcagtgtacattgcatcgacaactttcagatgatcaacatccgctaaca 21380236  T
Q  320 tctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaatgtgaagtcctatgacccaa 419  Q
    | |||||||||||||| |||||||| || ||  ||| |||||||| | || |||| || || |||||||||||||||||||||| |||  |||| |||||    
T  21380237 tttgaggctttgttttgtctccaaattttagtatgcattcattcatagctttttgaaccaaatccctgaaaagtacacaatgtggagttttatgtcccaa 21380336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 152 - 420
Target Start/End: Original strand, 14635049 - 14635317
Alignment:
Q  152 catctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaatagcttttcaacagtgtccgcaatggcgtccac 251  Q
    |||||||||| |||||||| ||||||||||| ||| ||| |||||| |||  ||||||||| | | | |   |||||| |   ||  ||||||| |||||    
T  14635049 catctttgggacttctagatacttctaccatctgagattcagcaacgtcagtttttgcttcgatagacaatctttcaataacatctacaatggcttccac 14635148  T
Q  252 cacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagc 351  Q
     ||||||||| ||||||| |  ||||||||||||| ||| |||||||| ||||||||||  |||||||  || || |||| ||||||||||||| |||||    
T  14635149 tacgttacaaattgcaacatccatgtacattgcgttgacgtcttttaatggatcaacatctacttgcaaatggggttttgctttatctccaaacctcagc 14635248  T
Q  352 ctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaatgtgaagtcctatgacccaaa 420  Q
    ||||||||||| | |  |||||| ||||||||||| ||||||||||||||||||||| | |||||||||    
T  14635249 ctgccttcatttagacttctttgtactaagtcccttaaaagtacacaatgtgaagtcttgtgacccaaa 14635317  T

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Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 163 - 420
Target Start/End: Original strand, 16904675 - 16904932
Alignment:
Q  163 cttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaatagcttttcaacagtgtccgcaatggcgtccaccacgttacaac 262  Q
    |||| ||||||||||||||| | | ||| || ||||||| ||||| |||  | | |||||||||||||||  ||| ||||| | ||||| | ||||||||    
T  16904675 cttccagaaacttctaccatcttagattcagtaacatcacctttttctttgacagatagcttttcaacagcatccacaatgacttccactatgttacaac 16904774  T
Q  263 ttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagcctgccttcatt 362  Q
    | ||||||| |  |||||||| |||||  ||| |||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||  | |||||||||||    
T  16904775 tagcaacttcatcgtacattgtgtcgatgtctcttaagggatcgacatccacttacatttgaggttttgttttatctctaaaattttgactgccttcatt 16904874  T
Q  363 caaaactctttgcactaagtccctgaaaagtacacaatgtgaagtcctatgacccaaa 420  Q
    || | | ||||||||| |||||| |||||||||||||||||||||| |||| ||||||    
T  16904875 cagagcactttgcacttagtcccagaaaagtacacaatgtgaagtcttatgtcccaaa 16904932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 16053753 - 16054131
Alignment:
Q  20 atctggggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagccatgggataagctgctttttccttctc 119  Q
    |||||||||||||||| |||||||||||||| || |||||||  ||||||||||| ||||| ||||||||||||||  |||||||  ||||   ||||||    
T  16053753 atctggggcataacataacctcagaattctttaacctgcaacagttgaggaaatcaatcaattcctcttcagccatatgataagccactttcatcttctc 16053852  T
Q  120 atcaaatagagattctgaaatgatttcgtcagcatctttggggcttctagaaacttctaccatatgacatttagcaacatcatcttttgcttcaaaaaat 219  Q
    | ||||| ||||||||||||||| ||| ||| ||  |||| ||| |  | || |||| | ||| ||||||| | |||||| | ||||| | | || ||      
T  16053853 agcaaattgagattctgaaatgacttcatcaacacttttgaggccttcaaaagcttccaacatctgacattcaacaacattaactttttccttaacaaga 16053952  T
Q  220 agcttttcaacagtgtccgcaatggcgtccaccacgttacaacttgcaactttaatgtacattgcgtcgacatcttttaagggatcaacattcacttgca 319  Q
    |  || || ||||  ||    ||||| || ||| |||| |||  ||||||||   |||||||||| || ||| |||| |  ||||||| || || |||||    
T  16053953 aatttctcgacagcatcaatgatggcttcaaccgcgttgcaatctgcaacttctgtgtacattgcatcaacaactttgacaggatcaatatccagttgca 16054052  T
Q  320 tctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacaca 398  Q
    || ||||||||| ||| |||||||| ||||||||||||||||| | | || |||| || || ||||||||||| |||||    
T  16054053 tcagaggctttgatttgtctccaaatttcagcctgccttcatttagagctttttgaaccaaatccctgaaaagaacaca 16054131  T

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Target: scaffold0142 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 277 - 404
Target Start/End: Original strand, 18343 - 18470
Alignment:
Q  277 tacattgcgtcgacatcttttaagggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgca 376  Q
    |||||||| ||||| ||||||   |||||||||| ||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||| | || ||||||    
T  18343 tacattgcatcgacgtcttttggaggatcaacatccacttgcatttgaggttttcttttatctccaaacttcagtctgccttcattcagagctttttgca 18442  T
Q  377 ctaagtccctgaaaagtacacaatgtga 404  Q
    | || ||||| |||||||||||||||||    
T  18443 ccaaatccctaaaaagtacacaatgtga 18470  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 404
Target Start/End: Complemental strand, 17163880 - 17163777
Alignment:
Q  301 ggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagcctgccttcattcaaaactctttgcactaagtccctgaaaagtacacaat 400  Q
    |||||||||| |||||| |||| |||||||| ||| | |||||| ||||| ||||||||||||||| |||| || || || |||||| |||| ||||| |    
T  17163880 ggatcaacatccacttgtatctaaggctttgatttgtttccaaatttcagtctgccttcattcaaagctctctgaaccaaatccctgtaaagaacacact 17163781  T
Q  401 gtga 404  Q
    ||||    
T  17163780 gtga 17163777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 24987429 - 24987369
Alignment:
Q  20 atctggggcataacattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaa 80  Q
    |||| ||||| | |||||||| |||||||||||  ||||| |||||||||||||| |||||    
T  24987429 atctagggcagagcattaccttagaattcttcagcctgcatcgattgaggaaatcaatcaa 24987369  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 79641 - 79582
Alignment:
Q  33 cattacctcagaattcttcaatctgcaacgattgaggaaatcgatcaactcctcttcagc 92  Q
    |||||||||||||||||| |   |||| |||||||||||||| |||||||| ||||||||    
T  79641 cattacctcagaattctttagcttgcatcgattgaggaaatcaatcaactcttcttcagc 79582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 21331880 - 21331959
Alignment:
Q  286 tcgacatcttttaagggatcaacattcacttgcatctgaggctttgttttatctccaaacttcagcctgccttcattcaa 365  Q
    |||||| ||||||  |||||||| | ||||||||| ||||||||||  || |||||||| |||| | |||||||||||||    
T  21331880 tcgacaacttttagaggatcaacttccacttgcatttgaggctttgacttgtctccaaatttcatcatgccttcattcaa 21331959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1720 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1720
Description:

Target: scaffold1720; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 342 - 293
Alignment:
Q  313 acttgcatctgaggctttgttttatctccaaacttcagcctgccttcatt 362  Q
    |||||||| ||||||||||  || ||||||||||||||| ||||||||||    
T  342 acttgcatttgaggctttggcttgtctccaaacttcagcatgccttcatt 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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