View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6718_high_8 (Length: 288)

Name: NF6718_high_8
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6718_high_8
NF6718_high_8
[»] chr5 (4 HSPs)
chr5 (19-288)||(39183898-39184167)
chr5 (49-272)||(8731033-8731258)
chr5 (112-288)||(23426432-23426609)
chr5 (44-239)||(17853790-17853986)
[»] chr1 (11 HSPs)
chr1 (60-280)||(17033695-17033915)
chr1 (68-272)||(42374279-42374483)
chr1 (65-266)||(38544496-38544697)
chr1 (75-286)||(46603485-46603692)
chr1 (86-204)||(38548838-38548957)
chr1 (49-152)||(37200355-37200459)
chr1 (72-213)||(49820307-49820448)
chr1 (129-280)||(19598743-19598895)
chr1 (35-147)||(26602558-26602671)
chr1 (137-288)||(50589037-50589189)
chr1 (31-124)||(41126196-41126289)
[»] chr7 (10 HSPs)
chr7 (28-279)||(22567832-22568084)
chr7 (60-151)||(28534264-28534355)
chr7 (139-266)||(12546240-12546367)
chr7 (59-288)||(9427854-9428087)
chr7 (19-163)||(23983446-23983593)
chr7 (99-285)||(11378923-11379107)
chr7 (138-280)||(9107268-9107410)
chr7 (95-165)||(36449315-36449385)
chr7 (233-280)||(48058581-48058628)
chr7 (169-287)||(13311939-13312056)
[»] chr6 (5 HSPs)
chr6 (31-279)||(33968342-33968588)
chr6 (60-149)||(17278237-17278326)
chr6 (216-272)||(13423581-13423637)
chr6 (232-277)||(16180828-16180873)
chr6 (65-125)||(32935083-32935143)
[»] chr2 (18 HSPs)
chr2 (49-272)||(25504649-25504874)
chr2 (35-288)||(22884863-22885115)
chr2 (49-284)||(33788373-33788610)
chr2 (49-288)||(27740074-27740313)
chr2 (99-288)||(43816249-43816438)
chr2 (60-191)||(13699039-13699170)
chr2 (134-204)||(20572271-20572341)
chr2 (231-288)||(16960081-16960138)
chr2 (129-285)||(29487233-29487389)
chr2 (133-266)||(3745456-3745585)
chr2 (31-100)||(20572339-20572409)
chr2 (229-284)||(2062992-2063045)
chr2 (133-204)||(4472105-4472177)
chr2 (19-124)||(16952076-16952182)
chr2 (19-124)||(17022741-17022847)
chr2 (84-204)||(15126186-15126308)
chr2 (63-124)||(17060093-17060153)
chr2 (172-204)||(24308593-24308625)
[»] chr4 (5 HSPs)
chr4 (84-288)||(12296274-12296480)
chr4 (133-266)||(46698616-46698744)
chr4 (85-262)||(46487396-46487575)
chr4 (84-280)||(28966974-28967171)
chr4 (229-280)||(21983744-21983795)
[»] chr8 (3 HSPs)
chr8 (35-288)||(15906786-15907041)
chr8 (62-118)||(25184897-25184953)
chr8 (86-280)||(17720486-17720680)
[»] scaffold1613 (1 HSPs)
scaffold1613 (65-266)||(775-976)
[»] chr3 (6 HSPs)
chr3 (60-266)||(25594284-25594491)
chr3 (62-165)||(823174-823277)
chr3 (19-165)||(45354640-45354789)
chr3 (66-239)||(27399110-27399284)
chr3 (60-110)||(16266010-16266060)
chr3 (227-280)||(46358307-46358360)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 39183898 - 39184167
Alignment:
Q  19 aataaccatcataaagacacccctcctcataacacctagtcaaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaa 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39183898 aataaccatcataaagacacccctcctcataacacttagtcaaccctaccttcaacacccttgaggacaacacccactaaaataaagatcaccacctaaa 39183997  T
Q  119 aaagactatatcacgaaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtc 218  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  39183998 acagactctatcacgaaacgaccactgaaaaacggtatccataaccaacatcgccactacttatcccaaaataacacccctcttaacgaatcaccatgtc 39184097  T
Q  219 ctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39184098 ctcaacaccaaagctgagccactattcaaaagatcaatcagcttccactacctcacaacctctggtccac 39184167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 49 - 272
Target Start/End: Complemental strand, 8731258 - 8731033
Alignment:
Q  49 aacacctagtcaa-ccctaccttcaacacccttgaggacaa-cacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactga 146  Q
    ||||||||||||| ||| ||||||||||||| ||| ||||| ||||||| |||||||| ||||| |||||||| ||| | | ||||||||||||||||||    
T  8731258 aacacctagtcaaaccccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaacgaccactga 8731159  T
Q  147 aaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcg 246  Q
    ||||||||||| |||| |||    ||||||||| |||||||||||||||||||||||| ||| || ||| |||||| |||||||| ||||||  |||||     
T  8731158 aaaacggtatcaataaacaaaaaagccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattct 8731059  T
Q  247 aaagatcaatcagcttccactacctc 272  Q
    ||| |||||| ||||||||| |||||    
T  8731058 aaatatcaattagcttccaccacctc 8731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 288
Target Start/End: Complemental strand, 23426609 - 23426432
Alignment:
Q  112 acctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataaccaa-cttcgccactacttatcccaaaataacacccctctaaacgaagc 210  Q
    |||||||| ||||| | |||| |||||||||||||||||   || ||||||| |  | ||||||||||| ||||| | |||||| ||||||||| ||| |    
T  23426609 acctaaaatagactctttcacaaaacgaccactgaaaaataatacccataactactcgtcgccactactcatccccagataacaaccctctaaatgaaac 23426510  T
Q  211 accatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    ||  ||||| |||| || |||||||||||  |||| |  ||||||||||||||||| ||| |||||||||||||||||    
T  23426509 acattgtccgcaactcctaagctgagccacaattccatggatcaatcagcttccaccaccacacaacctctggtccac 23426432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 17853790 - 17853986
Alignment:
Q  44 ctcataacacctagtcaa-ccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgacca 142  Q
    |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||| |||||||| |||||   |||||| |||||   | ||||||||| ||    
T  17853790 ctcacaacacctagccaaaccctaccttcaccacccatgaggaaaacacccaccaaaataaacatcaccttctaaaacagactcctttacgaaacgatca 17853889  T
Q  143 ctgaaaaacggtatccataacca-acttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagcca 239  Q
    |||||||||| ||||||||||||  | || |||||||| | |||||||  | || |||||||| ||| |||||  |||||| ||||| ||||||||||    
T  17853890 ctgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctctaaatgaaacacca-atcctcatcaccatagctgagcca 17853986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 60 - 280
Target Start/End: Complemental strand, 17033915 - 17033695
Alignment:
Q  60 aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatcca 159  Q
    ||||||||||||||||||| || |||||||| |||| |||||||| || || |||||||| | ||| | |||||||||||||||| ||||||||||| ||    
T  17033915 aaccctaccttcaacacccctggggacaacatccacgaaaataaacattaccacctaaaacatactctttcacgaaacgaccacttaaaaacggtataca 17033816  T
Q  160 taaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcag 259  Q
    |||||| | || |||||||| ||||||||||||||||||||| || ||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  17033815 taaccagcatcaccactactaatcccaaaataacacccctctgaatgaaacaccatgtcctcatcaccaaagttgagccattattctaaagatcaatcag 17033716  T
Q  260 cttccactacctcacaacctc 280  Q
    ||| ||  |||||| ||||||    
T  17033715 cttgcatcacctcataacctc 17033695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 42374483 - 42374279
Alignment:
Q  68 cttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataaccaac 167  Q
    |||||||||||||| ||||||| ||||| || ||||| ||||| |||||||| | | |   ||||||||||||||||||||||| ||||||||||||||     
T  42374483 cttcaacacccttggggacaacccccaccaagataaacatcaccacctaaaacaaattccttcacgaaacgaccactgaaaaactgtatccataaccaat 42374384  T
Q  168 ttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccact 267  Q
     || |||||||| | ||||| ||||||||||| |||| | | | ||  ||||||| |||||||| ||||||| ||||| ||||||||||||||||||||     
T  42374383 gtcaccactactgaacccaagataacacccctataaaagcaactcctcgtcctcatcaccaaagttgagccactattctaaagatcaatcagcttccacc 42374284  T
Q  268 acctc 272  Q
    |||||    
T  42374283 acctc 42374279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 266
Target Start/End: Original strand, 38544496 - 38544697
Alignment:
Q  65 taccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataacc 164  Q
    |||||||||||||| |||||||||||  ||| |||||||| ||||| |||||||| ||||| | ||||| || || ||||| |||||| |||||||||||    
T  38544496 taccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacggaatgatcactggaaaacgatatccataacc 38544595  T
Q  165 a-acttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttc 263  Q
    |  | ||| ||||||| |||||||  ||||||||||||||| ||| ||||  | ||||| || |||| |||||||| ||||| |||||||||||| ||||    
T  38544596 actcatcgtcactactcatcccaacgtaacacccctctaaatgaaacacc-cgccctcatcagcaaaactgagccactattctaaagatcaatcatcttc 38544694  T
Q  264 cac 266  Q
    |||    
T  38544695 cac 38544697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 286
Target Start/End: Complemental strand, 46603692 - 46603485
Alignment:
Q  75 acccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataaccaacttcgcca 174  Q
    |||| ||| |||||||||||| |||||||| ||||| | |||||| |||||   ||||||||||||||||| || ||| ||||||||| |||| ||||||    
T  46603692 acccctgaagacaacacccaccaaaataaa-atcaccatctaaaacagacttcttcacgaaacgaccactggaacacgttatccataatcaacatcgcca 46603594  T
Q  175 ctacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcac 274  Q
    |||||  |||||||||||||||||||||||  || ||  ||||||| | |||||||| |||||||  |||| | |||||||||| || |||| ||||| |    
T  46603593 ctactcttcccaaaataacacccctctaaa-taaacattatgtccttatcaccaaagttgagcca--attctacagatcaatcaactcccaccacctctc 46603497  T
Q  275 aacctctggtcc 286  Q
    |||||| |||||    
T  46603496 aacctccggtcc 46603485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 38548838 - 38548957
Alignment:
Q  86 caacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataacca-acttcgccactacttatcc 184  Q
    ||||| |||| |||||||| ||||| |||||||| ||||| | ||||||||||| |||||||||||| ||| ||||||||  | ||| ||||||| ||||    
T  38548838 caacatccaccaaaataaacatcaccacctaaaacagactctttcacgaaacgatcactgaaaaacgatattcataaccacccatcgtcactactcatcc 38548937  T
Q  185 caaaataacacccctctaaa 204  Q
    |||| |||||||||||||||    
T  38548938 caaagtaacacccctctaaa 38548957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 37200459 - 37200355
Alignment:
Q  49 aacacctagt-caaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaa 147  Q
    |||||||||| |||||| || |||||||| | ||||||||||||||||||||||||| ||||| |||||||| |  || |  |||||||| ||||||||     
T  37200459 aacacctagttcaacccaacattcaacactcatgaggacaacacccactaaaataaacatcaccacctaaaacaagctcttccacgaaacaaccactgac 37200360  T
Q  148 aaacg 152  Q
    |||||    
T  37200359 aaacg 37200355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 49820448 - 49820307
Alignment:
Q  72 aacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataacca-acttc 170  Q
    |||||||  |||| || ||| ||| |||||||| ||||| ||||||||||||||   | | ||||||| |||||||||||| ||||||||||||  | ||    
T  49820448 aacacccacgagggcaccacacaccaaaataaacatcaccacctaaaaaagactcctt-atgaaacgagcactgaaaaacgatatccataaccacccgtc 49820350  T
Q  171 gccactacttatcccaaaataacacccctctaaacgaagcacc 213  Q
    ||||| ||  ||||||||||| |||||||||||| ||| ||||    
T  49820349 gccaccacacatcccaaaatatcacccctctaaatgaaacacc 49820307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 280
Target Start/End: Complemental strand, 19598895 - 19598743
Alignment:
Q  129 tcacgaaacgaccactgaaaaacggtatccataaccaact-tcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacacc 227  Q
    ||||||||| |||||| ||||||   ||||||||||| |  ||||||||||| | ||||||||||| |||||||||| ||| |||  |  ||  | | |     
T  19598895 tcacgaaaccaccactaaaaaacaaaatccataaccatccatcgccactactcaacccaaaataacccccctctaaaagaaacactctagccgtatccca 19598796  T
Q  228 aaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctc 280  Q
     ||| |||||| |||||| |||||||||||| ||||||| |||||||||||||    
T  19598795 taagttgagccgttattctaaagatcaatcaacttccaccacctcacaacctc 19598743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 26602558 - 26602671
Alignment:
Q  35 acacccctcctcataacacctagtcaa-ccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacg 133  Q
    |||||||| | || ||||||||| ||| |||||||||||||| ||  ||||||||||||||  |||||||| ||||| |||||| | |||||   ||||     
T  26602558 acacccctacacacaacacctagccaaaccctaccttcaacaaccccgaggacaacacccatgaaaataaacatcaccacctaacacagactcattcaca 26602657  T
Q  134 aaacgaccactgaa 147  Q
    |||| |||||||||    
T  26602658 aaacaaccactgaa 26602671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 50589037 - 50589189
Alignment:
Q  137 cgaccactgaaaaacggtatccataaccaact-tcgccactacttatcccaaaa-taacacccctctaaacgaagcaccatgtcctcaacaccaaagctg 234  Q
    ||||||| |||||||| |||||||||||  |  | ||||||||| | ||||||| |||| |||||||||| ||| |||   |||  || |||| ||| ||    
T  50589037 cgaccaccgaaaaacgatatccataacctcccattgccactactcaacccaaaaataac-cccctctaaatgaaacactccgtctgcatcacctaagttg 50589135  T
Q  235 agccattattcgaaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    ||| | ||||| |||||||||||| |||| || |||||||||||||||||||||    
T  50589136 agctactattccaaagatcaatcaacttctaccacctcacaacctctggtccac 50589189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 41126196 - 41126289
Alignment:
Q  31 aaagacacccctcctcataacacctagtca-accctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagac 124  Q
    |||||||||||| | || ||||| ||| || ||||||||||||||||||  |||||||||||| || |||||| | ||||| |||||||| ||||    
T  41126196 aaagacacccctacacacaacacatagccataccctaccttcaacacccaagaggacaacacctac-aaaatacatatcaccacctaaaacagac 41126289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 22567832 - 22568084
Alignment:
Q  28 cataaagacacccctcctcataacacctagtcaa-ccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagacta 126  Q
    |||||| ||| |||| | || ||||||||||||| ||||||||||||||||| |  |||||||| |||| |||||| | ||||| |||||||| |||||     
T  22567832 cataaaaacagccctacacacaacacctagtcaaaccctaccttcaacacccctagggacaacatccaccaaaatacacatcaccacctaaaacagactc 22567931  T
Q  127 tatcacgaaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacac 226  Q
    | ||||||||| ||||||||||||||||||||||||||| | || |||||||| |||| ||||||||||||||  ||| ||| ||||||||||||  |||    
T  22567932 tttcacgaaacaaccactgaaaaacggtatccataaccagcatcaccactactcatccaaaaataacaccccttaaaatgaaacaccatgtcctcgtcac 22568031  T
Q  227 caaagctgagccattattcgaaagatcaatcagcttccactacctcacaacct 279  Q
    |||||||| | || ||||| ||||||||||||| || ||| ||||| ||||||    
T  22568032 caaagctggggcactattctaaagatcaatcagttttcaccacctctcaacct 22568084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 28534264 - 28534355
Alignment:
Q  60 aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaac 151  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||| ||||| | |||||||||||||||||||||||    
T  28534264 aaccctaccttcaacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaaacgaccactgaaaaac 28534355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 12546240 - 12546367
Alignment:
Q  139 accactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagcc 238  Q
    |||||| |||||||  |||||||||   | |||||||||||||||||||||||||||||||||||| ||| |||   ||| ||| |||| ||||||||||    
T  12546240 accacttaaaaacgaaatccataacactcgtcgccactacttatcccaaaataacacccctctaaatgaaacactccgtcgtcatcacctaagctgagcc 12546339  T
Q  239 attattcgaaagatcaatcagcttccac 266  Q
    | ||||| |||||||||||| |||||||    
T  12546340 actattctaaagatcaatcaacttccac 12546367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 288
Target Start/End: Original strand, 9427854 - 9428087
Alignment:
Q  59 caaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaa-acgaccactgaaaaacggtatc 157  Q
    |||||||||||| |||||||  |||||||||||| || |||||||| ||||| |||||||| | | | | ||||||| || |||||| ||||| | ||||    
T  9427854 caaccctacctttaacacccacgaggacaacacctaccaaaataaacatcactacctaaaacaaattctttcacgaagacaaccactaaaaaatgatatc 9427953  T
Q  158 cataacca-acttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaa---agctgagccattattcgaaagatc 253  Q
    ||||||||  | ||| ||||||| ||||| ||||| || ||||||||| |||  ||   | |||||||||| |   || ||||||| ||||| | |||||    
T  9427954 cataaccacccgtcgtcactactcatccctaaatagcatccctctaaatgaaatacatcgacctcaacacctaattagttgagccactattccatagatc 9428053  T
Q  254 aatcagcttccactacctcacaacctctggtccac 288  Q
    ||| ||||||||| || ||||||||||||||||||    
T  9428054 aat-agcttccaccacttcacaacctctggtccac 9428087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 23983593 - 23983446
Alignment:
Q  19 aataaccatcataaa-gacacccctcctcataacacctagtca-accctaccttcaacacccttgaggacaacacccactaaaataaagatcacaaccta 116  Q
    ||||| ||||||||| |||| |||| | || |||||||||||| ||| |||||||||||| | |||||||||||||||| |||||||| | ||| |||||    
T  23983593 aataaacatcataaaagacatccctacacacaacacctagtcataccttaccttcaacacacatgaggacaacacccaccaaaataaacaccaccaccta 23983494  T
Q  117 aaaaagactatatcacg-aaacgaccactgaaaaacggtatccataac 163  Q
    ||| |||||   ||||| |||| |||||||||||||| ||| ||||||    
T  23983493 aaacagactcattcacgaaaacaaccactgaaaaacgatatacataac 23983446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 285
Target Start/End: Original strand, 11378923 - 11379107
Alignment:
Q  99 aataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccc 198  Q
    |||||| ||||| |||||||| ||| |   ||| ||||| ||||||||||||| ||||||| |||||   |||||||||||  |||| ||| |||  |||    
T  11378923 aataaacatcaccacctaaaacagattccttcaagaaacaaccactgaaaaacagtatccaaaaccagtatcgccactactcctcccgaaaaaac--ccc 11379020  T
Q  199 tctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctctggtc 285  Q
    |||||| ||| |||| |||||| | |||   || ||||||||||||| |||||||||||||| ||||| ||||   |||||||||||    
T  11379021 tctaaatgaaacaccttgtccttatcacaggagttgagccattattctaaagatcaatcagcctccaccacctataaacctctggtc 11379107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 9107410 - 9107268
Alignment:
Q  138 gaccactgaaaaacggtatccataaccaact-tcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgag 236  Q
    ||||| || |||||| |||||||||||| |  ||||||||||| ||||||||||||| |||||||||| ||| ||||   |||||| |||||||| ||||    
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacacc-catcctcatcaccaaagttgag 9107312  T
Q  237 ccattattcgaaagatcaatcagcttccactacctcacaacctc 280  Q
    ||| ||||| |||| |||  || | ||||| ||||| |||||||    
T  9107311 ccactattctaaagttcacccaacatccaccacctctcaacctc 9107268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 36449385 - 36449315
Alignment:
Q  95 ctaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataacca 165  Q
    |||||||||| ||||| |||||||| ||||||  ||||||||| ||| |||||||||| ||||||||||||    
T  36449385 ctaaaataaacatcaccacctaaaatagactacttcacgaaacaaccgctgaaaaacgatatccataacca 36449315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 48058581 - 48058628
Alignment:
Q  233 tgagccattattcgaaagatcaatcagcttccactacctcacaacctc 280  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  48058581 tgagccactattctaaagatcaatcagcttccaccacctcacaacctc 48058628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 287
Target Start/End: Complemental strand, 13312056 - 13311939
Alignment:
Q  169 tcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccacta 268  Q
    ||||||||||  | |||||||||| || |||||||| ||| |||   ||||||  |||| |||||||| || ||||| ||| ||||||||||| |||| |    
T  13312056 tcgccactacacaccccaaaataa-acacctctaaatgaaacacttcgtcctcgtcacctaagctgagacactattctaaatatcaatcagctcccacca 13311958  T
Q  269 cctcacaacctctggtcca 287  Q
    |||| |||||||| |||||    
T  13311957 cctctcaacctctagtcca 13311939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 279
Target Start/End: Original strand, 33968342 - 33968588
Alignment:
Q  31 aaagacacccctcctcataacacctagtcaa-ccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatat 129  Q
    |||||||||||| | || | ||||||| ||| |||||||||||||||||||||||||||||||||| |||||| | |||||   |||||| ||||| | |    
T  33968342 aaagacacccctacacacatcacctagccaaaccctaccttcaacacccttgaggacaacacccaccaaaatagacatcac---ctaaaacagactcttt 33968438  T
Q  130 cacgaaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaa 229  Q
     || ||||||||||||||||| |||||||||||||| | ||  ||||||| |||||||||||||||||||||||| ||| |||  |||||| | | ||||    
T  33968439 tacaaaacgaccactgaaaaatggtatccataaccagcatcatcactactcatcccaaaataacacccctctaaatgaaacactttgtccttatcgccaa 33968538  T
Q  230 agctgagccattattcgaaagatcaatcagcttccactacctcacaacct 279  Q
    || ||||||| ||||| |||||||||||||||||||| | ||| ||||||    
T  33968539 agttgagccactattctaaagatcaatcagcttccaccatctctcaacct 33968588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 17278237 - 17278326
Alignment:
Q  60 aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaa 149  Q
    ||||||||||||||||||| || ||||||||||||| |||||||| || || |||||||  |||||   ||||||||||| |||||||||    
T  17278237 aaccctaccttcaacacccatgcggacaacacccaccaaaataaacattaccacctaaatcagactccttcacgaaacgaacactgaaaa 17278326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 13423637 - 13423581
Alignment:
Q  216 gtcctcaacaccaaagctgagccattattcg-aaagatcaatcagcttccactacctc 272  Q
    ||||||||||||||||||||||||  || || |||||||||||||||||||| |||||    
T  13423637 gtcctcaacaccaaagctgagcca-catccgaaaagatcaatcagcttccaccacctc 13423581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 16180828 - 16180873
Alignment:
Q  232 ctgagccattattcgaaagatcaatcagcttccactacctcacaac 277  Q
    ||||| |||||||  |||||||||||||||||||| ||||||||||    
T  16180828 ctgagtcattattttaaagatcaatcagcttccaccacctcacaac 16180873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 32935083 - 32935143
Alignment:
Q  65 taccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagact 125  Q
    |||||||||||| |  ||||||||||||||| |||||||| | ||| |||||||| |||||    
T  32935083 taccttcaacactcacgaggacaacacccaccaaaataaacaccaccacctaaaatagact 32935143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 25504649 - 25504874
Alignment:
Q  49 aacacctagtcaa-ccctaccttcaacacccttgaggacaa-cacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactga 146  Q
    ||||||||||||| ||| ||||||||||||| ||| ||||| ||||||| |||||||| ||||| |||||||| ||| | | ||||||||||||||||||    
T  25504649 aacacctagtcaaaccccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacgaaacgaccactga 25504748  T
Q  147 aaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcg 246  Q
    ||||||||||| |||| |||    ||||||||| |||||||||||||||||||||||| ||| || ||| |||||| |||||||| ||||||  |||||     
T  25504749 aaaacggtatcaataaacaaaaaagccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattct 25504848  T
Q  247 aaagatcaatcagcttccactacctc 272  Q
    ||| |||||| ||||||||| |||||    
T  25504849 aaatatcaattagcttccaccacctc 25504874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 35 - 288
Target Start/End: Original strand, 22884863 - 22885115
Alignment:
Q  35 acacccctcctcataacacctagtc-aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacg 133  Q
    |||||||| |||||| ||||||| | ||||| ||||||||||||| || ||||||||||||||||||  || ||||| |||||||| |||||   |||||    
T  22884863 acacccctactcatagcacctagcccaacccaaccttcaacacccatgtggacaacacccactaaaa--aacatcaccacctaaaacagactccttcacg 22884960  T
Q  134 aaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagct 233  Q
    ||||||||||||| |||||  ||||||||||  | |||||||| ||| ||||||||||||||||||||||| ||| |||   ||||||| |||| ||       
T  22884961 aaacgaccactgacaaacgaaatccataacccccgtcgccactgcttgtcccaaaataacacccctctaaatgaaacacaccgtcctcatcacctaaaac 22885060  T
Q  234 gagccattattcgaaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    |||||| ||||| | |||||||||| ||||||| ||||| |||||||||||||||    
T  22885061 gagccactattctatagatcaatcaacttccaccacctctcaacctctggtccac 22885115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 284
Target Start/End: Original strand, 33788373 - 33788610
Alignment:
Q  49 aacacctagtc-aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaa 147  Q
    ||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||| ||  | |||||||| || ||    |||||||| ||||||||     
T  33788373 aacacctagtccaacccaaccttcaacacccatgagtacaacacccactaaaataaacattgccacctaaaacaggctcctccacgaaacaaccactgac 33788472  T
Q  148 aaacggtatccataaccaact-tcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcg 246  Q
    ||||   ||||||||||| || |||||||||||  ||||||||||||||||||||||| ||| ||||  ||||||| |||| ||||||||||| || ||     
T  33788473 aaacaaaatccataaccacctgtcgccactactcgtcccaaaataacacccctctaaatgaaacaccccgtcctcatcacctaagctgagccactaatct 33788572  T
Q  247 aaagatcaatcagcttccactacctcacaacctctggt 284  Q
    | |||||||||||||||||| ||||| |||||||||||    
T  33788573 atagatcaatcagcttccaccacctctcaacctctggt 33788610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 27740313 - 27740074
Alignment:
Q  49 aacacctag-tcaaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaa 147  Q
    ||||||||| ||||||||||||||||||||| |||||||||| ||||  ||||||||   ||| |||||| | | |||   ||||||||| |||||||||    
T  27740313 aacacctagctcaaccctaccttcaacacccatgaggacaacgcccatcaaaataaac--caccacctaatacaaactccttcacgaaactaccactgaa 27740216  T
Q  148 aaacggtatccataaccaa-cttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcg 246  Q
     |||| ||| ||||||||  | ||||||||||| |||||| ||||||||||||||||| ||| |||  |||||||||  || ||| ||||||| |||||     
T  27740215 gaacgatattcataaccactcgtcgccactactcatcccagaataacacccctctaaatgaaacacattgtcctcaatgcctaagttgagccactattcc 27740116  T
Q  247 aaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    | ||||||||||| |||||| ||||| |||||||||||||||    
T  27740115 atagatcaatcagtttccaccacctctcaacctctggtccac 27740074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 288
Target Start/End: Original strand, 43816249 - 43816438
Alignment:
Q  99 aataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccc 198  Q
    |||||| ||||| |||||||| ||||| | ||||||||| |||||||||||||||||||||||  || | |||||||||||  |||| ||| ||||| ||    
T  43816249 aataaacatcaccacctaaaatagactctttcacgaaacaaccactgaaaaacggtatccatacacagcatcgccactactcctcccgaaaaaacactcc 43816348  T
Q  199 tctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    |||||| ||| |||| |||||||| ||| ||| | |||||| ||||| |||||||||||||| ||||| ||||   ||||||||||||||    
T  43816349 tctaaatgaaacaccttgtcctcatcactaaaacagagccactattctaaagatcaatcagcctccaccacctttaaacctctggtccac 43816438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 13699039 - 13699170
Alignment:
Q  60 aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatcca 159  Q
    ||||||||||||||||||| ||| || ||||||||| |||||||| ||||| |||||||| | ||| | | |||||||||||||||||||||||||| ||    
T  13699039 aaccctaccttcaacacccctgaagataacacccaccaaaataaacatcaccacctaaaacacactcttttacgaaacgaccactgaaaaacggtataca 13699138  T
Q  160 taaccaacttcgccactacttatcccaaaata 191  Q
    |||||| |  |||||||||| |||||||||||    
T  13699139 taaccagcaacgccactactcatcccaaaata 13699170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 20572341 - 20572271
Alignment:
Q  134 aaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaa 204  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||| | | ||||| ||||||||||||||    
T  20572341 aaacgaccactgaaaaacgatatccataaccaccatcgccactactcacctcaaaagaacacccctctaaa 20572271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 16960138 - 16960081
Alignment:
Q  231 gctgagccattattcgaaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    ||||||||||||||| ||||| |||||| ||||||| | |||||||||||||||||||    
T  16960138 gctgagccattattccaaagaacaatcaacttccaccagctcacaacctctggtccac 16960081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 29487389 - 29487233
Alignment:
Q  129 tcacgaaacgaccactgaaaaacggtatccataaccaact-tcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacacc 227  Q
    |||| |||||||| |||||||||  || ||||||||| || ||||||||||| ||||| | |||| ||||||||||| ||| |||    ||| |||| ||    
T  29487389 tcacaaaacgacccctgaaaaacaatacccataaccagctgtcgccactactcatccccagataa-acccctctaaatgaaacacaccatccgcaactcc 29487291  T
Q  228 aaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctctggtc 285  Q
     |||| |||||| ||||| |   |||||||||||||||| ||| ||||||||||||||    
T  29487290 taagccgagccactattccatgaatcaatcagcttccaccaccacacaacctctggtc 29487233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 3745585 - 3745456
Alignment:
Q  133 gaaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagc 232  Q
    ||||| ||||||||||| ||||||||||||||| | |||||| ||||  |||| ||  |||   |||||||| ||| |||| |||||||  |||| | ||    
T  3745585 gaaacaaccactgaaaa-cggtatccataaccagcatcgccaatactcctcccgaataaac---cctctaaatgaaacaccttgtcctcgtcaccgatgc 3745490  T
Q  233 tgagccattattcgaaagatcaatcagcttccac 266  Q
    ||||||| ||||| |||||||||||||| |||||    
T  3745489 tgagccactattctaaagatcaatcagcctccac 3745456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 20572409 - 20572339
Alignment:
Q  31 aaagacacccctcctcataacacctagtca-accctaccttcaacacccttgaggacaacacccactaaaa 100  Q
    |||||||||||| | || ||||| || ||| |||||||||||||||||| |||||||||||||||| ||||    
T  20572409 aaagacacccctacacacaacacttactcataccctaccttcaacacccatgaggacaacacccacgaaaa 20572339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 2063045 - 2062992
Alignment:
Q  229 aagctgagccattattcgaaagatcaatcagcttccactacctcacaacctctggt 284  Q
    ||||||||||| ||||  ||||||||||||| |||||| |||||||||||||||||    
T  2063045 aagctgagccactatt--aaagatcaatcagtttccacaacctcacaacctctggt 2062992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 4472177 - 4472105
Alignment:
Q  133 gaaacgaccactgaaaaacggtatccataaccaac-ttcgccactacttatcccaaaataacacccctctaaa 204  Q
    |||| ||||||||||||||| |||||||||||| |  |||||||||   | ||||||||||||||||||||||    
T  4472177 gaaatgaccactgaaaaacgttatccataaccaccaatcgccactagacaacccaaaataacacccctctaaa 4472105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 16952076 - 16952182
Alignment:
Q  19 aataaccatcataaa-gacacccctcctcataacacctagtcaac-cctaccttcaacacccttgaggacaacacccactaaaataaagatcacaaccta 116  Q
    ||||| ||||||||| ||||| ||| | || ||||||||||||   |||||||||||||||| ||| |||||||||||| |||||||| ||||| || ||    
T  16952076 aataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccactta 16952174  T
Q  117 aaaaagac 124  Q
    ||| ||||    
T  16952175 aaacagac 16952182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 17022741 - 17022847
Alignment:
Q  19 aataaccatcataaa-gacacccctcctcataacacctagtcaac-cctaccttcaacacccttgaggacaacacccactaaaataaagatcacaaccta 116  Q
    ||||| ||||||||| ||||| ||| | || ||||||||||||   |||||||||||||||| ||| |||||||||||| |||||||| ||||| || ||    
T  17022741 aataaacatcataaaagacactcctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccactta 17022839  T
Q  117 aaaaagac 124  Q
    ||| ||||    
T  17022840 aaacagac 17022847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 15126186 - 15126308
Alignment:
Q  84 gacaacacccactaaaataaagatcacaacctaaaaa-agactatatcacgaaacgaccactgaaaaacggtatccataaccaact-tcgccactactta 181  Q
    ||||| |||||| |||||||| ||||| ||||||||| | |||   ||||||||| ||| || ||||||   ||||||||||| |  |||||||||||||    
T  15126186 gacaatacccaccaaaataaacatcaccacctaaaaacaaactcgttcacgaaaccacccctaaaaaacaaaatccataaccacccatcgccactactta 15126285  T
Q  182 tcccaaaataacacccctctaaa 204  Q
     ||||||||||| | ||||||||    
T  15126286 acccaaaataaccctcctctaaa 15126308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 17060093 - 17060153
Alignment:
Q  63 cctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagac 124  Q
    |||||||||||||||| ||| |||||||||||| |||||||| ||||| || ||||| ||||    
T  17060093 cctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagac 17060153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 24308593 - 24308625
Alignment:
Q  172 ccactacttatcccaaaataacacccctctaaa 204  Q
    |||||||| ||||||||||||||||||||||||    
T  24308593 ccactactcatcccaaaataacacccctctaaa 24308625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 288
Target Start/End: Complemental strand, 12296480 - 12296274
Alignment:
Q  84 gacaacacccactaaaataaagatcacaacctaaaaa-agactatatcacgaaacgaccactgaaaaacggtatccataaccaact-tcgccactactta 181  Q
    |||||||||||| |||||||| ||||| ||||||||| |||||   |  |||| |||||||||||||||| |||||||||||| |  ||||||||||| |    
T  12296480 gacaacacccaccaaaataaacatcaccacctaaaaacagactcctttccgaagcgaccactgaaaaacgatatccataaccacccatcgccactactca 12296381  T
Q  182 tcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctct 281  Q
    ||||||||||||||||||||||| ||| |||   ||||||| |||| ||| ||||||| || || ||||| ||| |||||||||| ||| |||||||||     
T  12296380 tcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttgagccactactctaaagaacaaccagcttccaccaccacacaacctcc 12296281  T
Q  282 ggtccac 288  Q
    |||||||    
T  12296280 ggtccac 12296274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 46698616 - 46698744
Alignment:
Q  133 gaaacgaccactgaaaaacggtatccataaccaacttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagc 232  Q
    ||||| ||||||||||| ||||||||||||||||| |||| ||||||  |||| ||| |    ||||||||| ||| |||| |||||||| |||||||||    
T  46698616 gaaacaaccactgaaaa-cggtatccataaccaacatcgctactactcctcccgaaaaa----ccctctaaatgaaacaccttgtcctcatcaccaaagc 46698710  T
Q  233 tgagccattattcgaaagatcaatcagcttccac 266  Q
     |||||| ||||| |||||| |||||||||||||    
T  46698711 cgagccactattctaaagatgaatcagcttccac 46698744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 46487575 - 46487396
Alignment:
Q  85 acaacacccactaaaataaagatcacaacctaaaaa-agactatatcacgaaacgaccactgaaaaacggtatccataaccaact-tcgccactacttat 182  Q
    |||| |||||| |||||||| |||||  |||||||| |||||   ||| ||| |||||||||||||||| ||| ||||||||  | ||||||||||| ||    
T  46487575 acaatacccaccaaaataaacatcacctcctaaaaacagactccttcatgaagcgaccactgaaaaacgatattcataaccacatatcgccactactcat 46487476  T
Q  183 cccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagctt 262  Q
    || ||||||| | ||||||||||||| | |   |||||||||||| || || ||||| ||||  ||||||||||||||||    
T  46487475 cctaaaataaaatccctctaaacgaaacgctccgtcctcaacacctaaactaagccactattataaagatcaatcagctt 46487396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 280
Target Start/End: Complemental strand, 28967171 - 28966974
Alignment:
Q  84 gacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataaccaa-cttcgccactacttat 182  Q
    |||||||||||| |||||||| ||| | ||||||||| ||   | ||||||||| |||||| ||||||   |||||||||||  | ||||||||||| |     
T  28967171 gacaacacccaccaaaataaacatcgccacctaaaaacgaacctttcacgaaaccaccactaaaaaacataatccataaccactcatcgccactactcag 28967072  T
Q  183 cccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctc 280  Q
    |||||||||||  |||| |||| ||| |||     || |  | |  ||| ||||||| ||||| | |||||||||||||||||| |||||||||||||    
T  28967071 cccaaaataacctccctttaaatgaaacactccagccgcgtcccataagatgagccactattctagagatcaatcagcttccaccacctcacaacctc 28966974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 21983744 - 21983795
Alignment:
Q  229 aagctgagccattattcgaaagatcaatcagcttccactacctcacaacctc 280  Q
    |||||||| || ||||| |||||||||||| ||||||| |||||||||||||    
T  21983744 aagctgagtcactattctaaagatcaatcaacttccaccacctcacaacctc 21983795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 35 - 288
Target Start/End: Complemental strand, 15907041 - 15906786
Alignment:
Q  35 acacccctcctcataacacctagtc-aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacg 133  Q
    |||||||| | || ||||||||| | ||||||||||||||||||| ||||||| ||||||||  | ||| | ||||| ||| |||| |||     |||||    
T  15907041 acacccctacacacaacacctagcccaaccctaccttcaacacccatgaggaccacacccacagagatagacatcaccaccaaaaacagatcccttcacg 15906942  T
Q  134 aaacgaccactgaaaaacggtatccataaccaact-tcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagc 232  Q
    |||||||||||||||||| |||||||||||||  | | ||||||||| |||||||||||||||| |||||||  || |||  |||||||| |||| |||     
T  15906941 aaacgaccactgaaaaacagtatccataaccacatgttgccactactcatcccaaaataacacctctctaaataaaacacactgtcctcatcacctaagt 15906842  T
Q  233 tgagccattattcgaaagatcaatcagcttccactacctcacaacctctggtccac 288  Q
    ||||| | ||||| | | |||||||| ||||||| |||||  ||||||||||||||    
T  15906841 tgagctactattctataaatcaatcatcttccaccacctcttaacctctggtccac 15906786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 25184897 - 25184953
Alignment:
Q  62 ccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaa 118  Q
    ||||||||||||||| | |||||||||||||||| |||||||| ||||| |||||||    
T  25184897 ccctaccttcaacactcatgaggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 280
Target Start/End: Original strand, 17720486 - 17720680
Alignment:
Q  86 caacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataaccaact-tcgccactacttatcc 184  Q
    ||||||||||||||| ||| ||||| |||||||| | |||   |||| ||| |||| || ||||| | ||| ||||||||  | ||| ||||||| | ||    
T  17720486 caacacccactaaaa-aaacatcactacctaaaacaaactccttcaccaaaagacctctaaaaaaagatatacataaccacatatcgtcactactcaccc 17720584  T
Q  185 caaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctc 280  Q
    |||||  | ||||||||||| ||| |||   ||||||| |||  ||  ||||||| ||||| |||||||||||| ||||||| ||||| |||||||    
T  17720585 caaaaataaacccctctaaatgaaacactccgtcctcatcacttaatttgagccactattctaaagatcaatcaacttccaccacctctcaacctc 17720680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 266
Target Start/End: Original strand, 775 - 976
Alignment:
Q  65 taccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataacc 164  Q
    |||||||||||||| |||||||||||  ||| |||||||| ||||| |||||||| ||||| | ||||| || || ||||| |||||| |||||||||||    
T  775 taccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcacggaatgatcactggaaaacgatatccataacc 874  T
Q  165 a-acttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatcagcttc 263  Q
    |  | ||| ||||||| |||||||  ||||||||||||||| ||| ||||  | ||||| || |||| |||||||| ||||| |||||||||||| ||||    
T  875 actcatcgtcactactcatcccaacgtaacacccctctaaatgaaacacc-cgccctcatcagcaaaactgagccactattctaaagatcaatcatcttc 973  T
Q  264 cac 266  Q
    |||    
T  974 cac 976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 266
Target Start/End: Original strand, 25594284 - 25594491
Alignment:
Q  60 aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaa-cggtatcc 158  Q
    |||| |||||||||||||| |||||||||||||||| | |||||| ||||| |||||||| | |||   |||| ||||||||||||||||| || |||||    
T  25594284 aaccataccttcaacacccatgaggacaacacccaccacaataaacatcactacctaaaacatactccttcacaaaacgaccactgaaaaaacgatatcc 25594383  T
Q  159 ataaccaact-tcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagccattattcgaaagatcaatc 257  Q
    | ||||| |  ||||||||||| ||||||| ||||||| |||||||| | | |||   ||||||  | |||||| ||||||| ||||| |||||||||||    
T  25594384 a-aaccacccatcgccactactcatcccaagataacactcctctaaatggaacactccgtcctcgtctccaaagttgagccactattctaaagatcaatc 25594482  T
Q  258 agcttccac 266  Q
     ||||||||    
T  25594483 cgcttccac 25594491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 823174 - 823277
Alignment:
Q  62 ccctaccttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccata 161  Q
    ||||||||||||||||| |||||||| ||||||| ||||| ||  |||| |||||||| | |||  ||||| |||| |||||||||||||| ||||||||    
T  823174 ccctaccttcaacacccatgaggacatcacccaccaaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccata 823273  T
Q  162 acca 165  Q
    ||||    
T  823274 acca 823277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 45354640 - 45354789
Alignment:
Q  19 aataaccatcataaa-gacacccctcctcataacacctagtcaa-ccctaccttcaacacccttgaggacaacacccactaaaat-aaagatcacaacct 115  Q
    ||||| ||||||||| ||||||||| | || | ||||||| ||| ||||||||||||||||  | |||||||||||||| ||||| ||| ||||| ||||    
T  45354640 aataaacatcataaaagacacccctacacacagcacctagccaaaccctaccttcaacacctattaggacaacacccacaaaaataaaatatcaccacct 45354739  T
Q  116 aaaaaagactatatcacgaaacgaccactgaaaaacggtatccataacca 165  Q
    | || | | | | |||||||||||||||||||||| | ||||||||||||    
T  45354740 agaatataatctttcacgaaacgaccactgaaaaaggatatccataacca 45354789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 27399284 - 27399110
Alignment:
Q  66 accttcaacacccttgaggacaacacccactaaaataaagatcacaacctaaaaaagactatatcacgaaacgaccactgaaaaacggtatccataacca 165  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||  |||||||| || ||   ||||| ||||||||||| |||||| |||| |||| |     
T  27399284 accttcaacacccatgaggacaacacccaccaaaataaacatcatcacctaaaacaggctccttcacgcaacgaccactg-aaaacgatatctataaacc 27399186  T
Q  166 a--cttcgccactacttatcccaaaataacacccctctaaacgaagcaccatgtcctcaacaccaaagctgagcca 239  Q
    |  | | ||||||||| | ||||||| ||||||| |||||| ||| ||||| ||||||  ||| ||| ||||||||    
T  27399185 acccattgccactactcagcccaaaagaacacccgtctaaatgaaacaccaagtcctcctcactaaaactgagcca 27399110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 16266060 - 16266010
Alignment:
Q  60 aaccctaccttcaacacccttgaggacaacacccactaaaataaagatcac 110  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||| |||||    
T  16266060 aaccctaccttcaacacccatgaggacaacatccaccaaaataaacatcac 16266010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 46358307 - 46358360
Alignment:
Q  227 caaagctgagccattattcgaaagatcaatcagcttccactacctcacaacctc 280  Q
    ||||||| |||||||||||  ||||||||| ||||||||| ||||| |||||||    
T  46358307 caaagctaagccattattcccaagatcaataagcttccaccacctctcaacctc 46358360  T

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