View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6718_high_9 (Length: 257)

Name: NF6718_high_9
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6718_high_9
NF6718_high_9
[»] chr6 (26 HSPs)
chr6 (10-236)||(29949900-29950126)
chr6 (16-236)||(30149297-30149517)
chr6 (16-224)||(29953703-29953911)
chr6 (16-236)||(30053197-30053417)
chr6 (19-205)||(30154301-30154487)
chr6 (16-168)||(24897915-24898067)
chr6 (16-205)||(24934468-24934657)
chr6 (16-205)||(24739204-24739393)
chr6 (16-194)||(24942012-24942190)
chr6 (16-205)||(21160634-21160823)
chr6 (16-181)||(30577777-30577942)
chr6 (16-147)||(30134984-30135115)
chr6 (28-203)||(29348619-29348794)
chr6 (103-204)||(29882237-29882338)
chr6 (103-204)||(29909393-29909494)
chr6 (102-210)||(29887093-29887201)
chr6 (32-180)||(30028964-30029112)
chr6 (102-180)||(16702241-16702319)
chr6 (103-180)||(29929099-29929176)
chr6 (104-180)||(15715083-15715159)
chr6 (88-148)||(30132573-30132633)
chr6 (102-181)||(29946262-29946341)
chr6 (20-74)||(16517626-16517680)
chr6 (102-236)||(29366516-29366650)
chr6 (102-180)||(29876651-29876729)
chr6 (128-180)||(24884966-24885017)
[»] chr3 (1 HSPs)
chr3 (16-236)||(24226590-24226810)
[»] scaffold0110 (1 HSPs)
scaffold0110 (16-168)||(43878-44030)
[»] chr4 (1 HSPs)
chr4 (16-168)||(44262602-44262754)
[»] chr7 (1 HSPs)
chr7 (20-90)||(13093546-13093616)
[»] scaffold0237 (1 HSPs)
scaffold0237 (103-180)||(22169-22246)
[»] scaffold0054 (1 HSPs)
scaffold0054 (103-204)||(53692-53793)
[»] chr5 (1 HSPs)
chr5 (129-205)||(20888536-20888612)
[»] scaffold0014 (1 HSPs)
scaffold0014 (29-180)||(137200-137351)
[»] scaffold0652 (1 HSPs)
scaffold0652 (102-188)||(1381-1467)
[»] scaffold0086 (1 HSPs)
scaffold0086 (102-180)||(31400-31478)
[»] chr1 (3 HSPs)
chr1 (104-177)||(10129966-10130039)
chr1 (89-172)||(19490084-19490167)
chr1 (128-180)||(41316095-41316147)
[»] chr8 (1 HSPs)
chr8 (104-180)||(13904694-13904770)
[»] scaffold0051 (1 HSPs)
scaffold0051 (128-180)||(43406-43458)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 29949900 - 29950126
Alignment:
Q  10 aagaatatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatt 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  29949900 aagaagatcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatctggagtcatattactggaatgcatt 29949999  T
Q  110 tctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29950000 tctttgaagagattcgcagcttcattcaccattttattcttacataatccgttaatcatgatattgtagctaaaaacattaggagtcactccccttagag 29950099  T
Q  210 aaagggtgttgaatagatgtttggcct 236  Q
     ||||||||||||||||||||||||||    
T  29950100 gaagggtgttgaatagatgtttggcct 29950126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 30149517 - 30149297
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||| |||||| || ||| |||||| | | |||||||||||||||    
T  30149517 atcccaaacatcagatactctccctaatttgcaaagtccatcaataagggaattgtatgttacagtgttaggaatcatatctttcgaatgcatttctttg 30149418  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagagaaaggg 215  Q
    || |||||  | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30149417 aaaagatttacggcttcatccaccattttattcttacataatccgttaatcatgatattgtagctaaaaacattaggagtcactccccttagagaaaggg 30149318  T
Q  216 tgttgaatagatgtttggcct 236  Q
    |||||||||||||||||||||    
T  30149317 tgttgaatagatgtttggcct 30149297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 29953703 - 29953911
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||| ||||||    
T  29953703 atcccaaacatcagagatgctccctgatttgcaaagtccatcaataagagaattgtatgatattgtatcaggagtcatatttctggaatgcatatctttg 29953802  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagagaaaggg 215  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||  ||  | ||||||| |||||||| ||| ||  |    
T  29953803 aagagattcgcagcttcattcaccattttattcttacataatccgttaatcatgacattgtagctatgaagttcaggagtcactcccctttgagcaatag 29953902  T
Q  216 tgttgaata 224  Q
    |||||||||    
T  29953903 tgttgaata 29953911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 30053417 - 30053197
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||  |||||||| |||||||| ||| |  ||||||||||||||    
T  30053417 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagtgaactgtatgtaacagtattaggagtcatgttttttaaatgcatttctttg 30053318  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagagaaaggg 215  Q
    || || ||| ||||||||| ||||||||||||||||| |||||| |||||||||| | ||||||||  ||||||||||||| |||||||||||||||  |    
T  30053317 aaaagtttcacagcttcatccaccattttattcttacataatccattaatcatgacaatgtagctatgaacattaggagtcactccccttagagaaatag 30053218  T
Q  216 tgttgaatagatgtttggcct 236  Q
    ||||||||| |||||||||||    
T  30053217 tgttgaatacatgtttggcct 30053197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 30154487 - 30154301
Alignment:
Q  19 ccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaag 118  Q
    ||||||||||||||||||||| ||||||||||| || |||||||| |||||||||| || |||||| ||||||| | || |||||||||||||||| |||    
T  30154487 ccaaacatcagagattctccccgatttgcaaagcccgtcaataagggaattgtatgttatagtattaggagtcaaacttttggaatgcatttctttaaag 30154388  T
Q  119 agattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 205  Q
    ||| || ||||||||| ||||||||||  ||||| |||||| |||||||||| | ||||||||  ||||||||||||| ||||||||    
T  30154387 agaatcacagcttcatccaccattttaaccttacataatccattaatcatgacactgtagctacgaacattaggagtcactcccctt 30154301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 24898067 - 24897915
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||| ||| |||||| |||| |||  |||| ||| ||| |  |||||| |||||||    
T  24898067 atcccaaacatcagatattttccccgatttgcaaagtccatcaataagtgaactgtatgctacaatatcaggagccatgttttttaaatgcaattctttg 24897968  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcat 168  Q
    ||||||||  ||||||||| ||||||||||||||||| |||||||||||||||    
T  24897967 aagagattgacagcttcatccaccattttattcttacataatccgttaatcat 24897915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 24934657 - 24934468
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||| ||||||||||||||||  |||||  ||| ||||| ||||| |||||||||| ||||||||| |||| |||| || |||||||||||||||||    
T  24934657 atcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacagtattaggagccatacttttggaatgcatttctttg 24934558  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 205  Q
    ||||||||  | ||||||| |||||||||| |||| | || ||| |||||||| ||| |||||||   ||||| ||||||| ||||||||    
T  24934557 aagagattaacggcttcatccaccattttagtcttgcatagtccattaatcataatactgtagctttgaacatcaggagtcactcccctt 24934468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 24739204 - 24739393
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||| ||||| |||||||||| ||||||  ||| ||||| ||||| ||| |||||| ||||||||| |||| |||| || |||||||||||||||||    
T  24739204 atcccaagcatcaaagattctcccagatttgtgaagaccatcgataagtgaactgtatgttacagtattaggagccatacttttggaatgcatttctttg 24739303  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 205  Q
    | ||||||  | ||||||| |||||||||| |||||| || ||| |||||||||| | | ||||||  ||||| ||||||| ||||||||    
T  24739304 aggagattaacggcttcatccaccattttagtcttacatagtccattaatcatgacactatagctatgaacatcaggagtcactcccctt 24739393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 24942190 - 24942012
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||  || | |||  |||| ||| |||||   ||||| |||||||    
T  24942190 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagcgaactgtatactataatatcaggagccatgtttcttatatgcaattctttg 24942091  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggag 194  Q
    ||||||||  | ||||||| ||||||||||||||||| ||||||  | ||||||| | ||||||||  || ||||||||    
T  24942090 aagagattgacggcttcatccaccattttattcttacataatccagttatcatgacactgtagctatgaagattaggag 24942012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 21160634 - 21160823
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||| ||||||||||||||||  |||||  ||| ||||| ||||| |||||||||| |||| |||  |||| ||| ||| |  |||||||||||||     
T  21160634 atcccaagcatcagagattctcccatatttgagaagaccatcgataagtgaattgtatgttacaatatcaggagccatgttttttaaatgcatttcttta 21160733  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 205  Q
    ||||||||  | ||||||| ||||||||||||||||| || ||| |||||||||| | | ||||||  |||||||| |||| ||||||||    
T  21160734 aagagattaacggcttcatccaccattttattcttacatagtccattaatcatgacagtatagctatgaacattagaagtcactcccctt 21160823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 30577777 - 30577942
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||||||| ||||||||| ||  |||||| |||||| |||||||| | | |||||| || |||||  ||||||||| || || | |||||||||||     
T  30577777 atcccaaacataagagattcttcccaatttgccaagtccgtcaataagggtactgtatgttatagtatcaggagtcatacttttgaattgcatttcttta 30577876  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagcta 181  Q
    |||||| || ||||||||| ||||||||||  ||||| |||||| |||||||| ||||||||||||    
T  30577877 aagagaatcacagcttcatccaccattttagccttacttaatccattaatcattatattgtagcta 30577942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 30135115 - 30134984
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||| |  |  || |  ||||||||  || ||||||||||||| ||     
T  30135115 atcccaaacatcagaggttctccccgatatgcaaagtccatcaataagcgaagtgtacgtgaatgtgtcaggagtcattcttttggaatgcatttcgttt 30135016  T
Q  116 aagagattcgcagcttcattcaccattttatt 147  Q
    ||||||||| | |||||||  |||||||||||    
T  30135015 aagagattcacggcttcatcaaccattttatt 30134984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 29348619 - 29348794
Alignment:
Q  28 agagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgca 127  Q
    ||||||| |||||||||| || |  ||||||||||| |||||||| | |||   ||  ||| | || ||| || ||||||||||||| |||||||||       
T  29348619 agagattttccctgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatgtttttgcaatgcatttctttaaagagattcatg 29348718  T
Q  128 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccc 203  Q
    |||||||  ||| ||||| ||||||  || |||||||||||||||||||||||   |||||||| |||| ||||||    
T  29348719 gcttcatcaacctttttaatcttacaaaacccgttaatcatgatattgtagctctgaacattagcagtcactcccc 29348794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 29882338 - 29882237
Alignment:
Q  103 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccc 202  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| |||||||||||| |||||||   |||||||| |||| |||||    
T  29882338 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactccc 29882239  T
Q  203 ct 204  Q
    ||    
T  29882238 ct 29882237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 29909494 - 29909393
Alignment:
Q  103 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccc 202  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| |||||||||||| |||||||   |||||||| |||| |||||    
T  29909494 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactccc 29909395  T
Q  203 ct 204  Q
    ||    
T  29909394 ct 29909393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 29887201 - 29887093
Alignment:
Q  102 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcc 201  Q
    ||||||||||||  |||||||||   |||||||    ||||||| ||||||  ||||| ||||||||||||||||||||  ||||||||| |||| ||||    
T  29887201 aatgcatttcttcaaagagattcatggcttcatcggtcattttaatcttacaaaatccattaatcatgatattgtagctccaaacattagcagtcactcc 29887102  T
Q  202 ccttagaga 210  Q
    ||| |||||    
T  29887101 cctaagaga 29887093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 30029112 - 30028964
Alignment:
Q  32 attctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcagctt 131  Q
    ||||| || ||||| |||||||||| ||||||||||||||| |  || ||||| |||  ||||||||   |||||||||  || || |||||| ||||||    
T  30029112 attcttccggatttacaaagtccataaataagagaattgtacgtcaccgtattaggaaccatatttcgtaaatgcattttcttaaaaagattcacagctt 30029013  T
Q  132 cattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    ||| |||||||||| | ||||  ||||| | |||||| ||||| |||||    
T  30029012 catccaccattttactattacacaatccatcaatcataatattatagct 30028964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 16702241 - 16702319
Alignment:
Q  102 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    ||||||||||| |||||||||||   |||||||  ||||||||| |||||| |||||| ||||| | ||||||||||||    
T  16702241 aatgcatttctgtgaagagattcaaggcttcatcaaccattttaatcttacataatccattaataaggatattgtagct 16702319  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 29929176 - 29929099
Alignment:
Q  103 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| |||||||||||| |||||||    
T  29929176 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatactgtagct 29929099  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 15715083 - 15715159
Alignment:
Q  104 tgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    |||||||||||||||||||||   |||||||  ||||||||| |||||| ||| || ||||| |||||| |||||||    
T  15715083 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagct 15715159  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 30132633 - 30132573
Alignment:
Q  88 agtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccattttattc 148  Q
    ||||||| || |||||||||||||||| |||||| ||  |||||||| |||||||||||||    
T  30132633 agtcatacttttggaatgcatttctttaaagagaatcagagcttcatccaccattttattc 30132573  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 29946341 - 29946262
Alignment:
Q  102 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagcta 181  Q
    ||||||||||||  |||||||||   ||||||| |||||||||| ||||||  ||||| |||||||||||| | ||||||    
T  29946341 aatgcatttcttcaaagagattcatggcttcatccaccattttaatcttacaaaatccattaatcatgataatatagcta 29946262  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 16517680 - 16517626
Alignment:
Q  20 caaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatg 74  Q
    ||||||||||||| |||||||  ||||||||||  ||||||||| ||||||||||    
T  16517680 caaacatcagagaatctccctcgtttgcaaagtaaatcaataagtgaattgtatg 16517626  T

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Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 29366516 - 29366650
Alignment:
Q  102 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcc 201  Q
    ||||||||||||| |||||||||   |||||||  ||| ||||| ||||||  || |||| |||||||||| |||||||   || ||||||| || ||||    
T  29366516 aatgcatttctttaaagagattcatggcttcatcgacctttttaatcttacaaaacccgtgaatcatgatactgtagctgtgaatattaggattcactcc 29366615  T
Q  202 ccttagagaaagggtgttgaatagatgtttggcct 236  Q
    |||  |||| |  |||||||||| |||||| ||||    
T  29366616 cctctgagatatagtgttgaatatatgtttagcct 29366650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 29876729 - 29876651
Alignment:
Q  102 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    |||||||||||| ||||||||||   ||||||| || |||||||  |||||  ||||| |||||||||||| |||||||    
T  29876729 aatgcatttcttggaagagattcattgcttcatccatcattttaaccttacaaaatccattaatcatgatactgtagct 29876651  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 24885017 - 24884966
Alignment:
Q  128 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    ||||||| ||||||||||||||||| |||| |||||||  |||||||||||||    
T  24885017 gcttcatccaccattttattcttacataattcgttaat-gtgatattgtagct 24884966  T

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Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 24226810 - 24226590
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||| || |||||||||| |||||| |  |||  ||||||| |||||||||||||||||    
T  24226810 atcccaaacatcatatattctccttgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttttggaatgcatttctttg 24226711  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccccttagagaaaggg 215  Q
    || ||||| || ||||||| ||||||||||||||||| |||||| ||||||||||  |||||||||  |||||||||||||  ||||||||||||||  |    
T  24226710 aaaagatttgcggcttcatccaccattttattcttacataatccattaatcatgactttgtagctacgaacattaggagtcattccccttagagaaatag 24226611  T
Q  216 tgttgaatagatgtttggcct 236  Q
    |||||||||  ||||||||||    
T  24226610 tgttgaataactgtttggcct 24226590  T

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Target: scaffold0110 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 43878 - 44030
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||| |  |||||||||| |||||| || |||  ||||||| |||||||||||||||||    
T  43878 atcccaagcatcagacattctccctaatttgcaaagtccatcaattaaggaattgtatgttacagtgttaggaaccatatttttggaatgcatttctttg 43977  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcat 168  Q
    ||||||||  | ||||||| ||||||||||||||| |  ||||||||||||||    
T  43978 aagagattaactgcttcatccaccattttattcttgcaaaatccgttaatcat 44030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 44262602 - 44262754
Alignment:
Q  16 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttg 115  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| || |||||  |||| ||| ||| |    |||| |||||||    
T  44262602 atcccaaacatcagatattcttcctgatttgcaaagtccatcaataagtgaattgtatgttatagtatcgggagccatgttttttatttgcagttctttg 44262701  T
Q  116 aagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcat 168  Q
    ||||||||  | ||||||| ||||||||| |||||||  ||||| ||||||||    
T  44262702 aagagattgacggcttcatccaccatttttttcttacacaatccattaatcat 44262754  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 13093546 - 13093616
Alignment:
Q  20 caaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagt 90  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| |||| |||| |||||    
T  13093546 caaacatcatagaatctctctgatttgcaaagtccatcaataagtgaattgtatgttacaatattaggagt 13093616  T

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Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 22246 - 22169
Alignment:
Q  103 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    ||||||||||||||| || |||   ||||||| |||||||||| ||||||  ||||| ||||||||||||||||||||    
T  22246 atgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatgatattgtagct 22169  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 53692 - 53793
Alignment:
Q  103 atgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctccc 202  Q
    |||||||||| ||||||| |||   |||| || |||| ||||| ||||||  ||||| |||||||||||||||||||||  |||||||| |||| |||||    
T  53692 atgcatttctatgaagagtttcatggctttatccacctttttaatcttacaaaatccattaatcatgatattgtagctatgaacattagcagtcactccc 53791  T
Q  203 ct 204  Q
    ||    
T  53792 ct 53793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 20888612 - 20888536
Alignment:
Q  129 cttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacattaggagtcgctcccctt 205  Q
    |||||| ||||||||||||||||  |||| |||||||||||| ||||||||||  |||||||  |||| ||||||||    
T  20888612 cttcatccaccattttattcttatataatacgttaatcatgacattgtagctatcaacattataagtcactcccctt 20888536  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 137351 - 137200
Alignment:
Q  29 gagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatttggagtcatatttctggaatgcatttctttgaagagattcgcag 128  Q
    |||||||| ||||||||||| |  |||||||| ||||||||||| | ||| ||||| ||||  ||  ||    || ||||||| || |||||| ||  ||    
T  137351 gagattctacctgatttgcacaaaccatcaatgagagaattgtaagttaccgtattgggagaaattctttgacaacgcatttcattaaagagactcaaag 137252  T
Q  129 cttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    ||||||| ||||||||| ||||||  ||||| |||||||||||||| |||||    
T  137251 cttcattgaccattttaatcttacagaatccattaatcatgatattatagct 137200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 1381 - 1467
Alignment:
Q  102 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagctaaaaacat 188  Q
    ||||||||||| |||||||||||   |||||||  ||||||||| |||||| ||| || ||||| |||||| ||||||| |||||||    
T  1381 aatgcatttctgtgaagagattcaaggcttcatcaaccattttaatcttacataaaccattaataatgataatgtagctgaaaacat 1467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 31400 - 31478
Alignment:
Q  102 aatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    ||||||||||| |||||||||||   |||||||  || |||||| |||||| |||||| ||||| ||||||||||||||    
T  31400 aatgcatttctgtgaagagattcaaggcttcatcaacaattttaatcttacataatccattaataatgatattgtagct 31478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 10130039 - 10129966
Alignment:
Q  104 tgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgta 177  Q
    |||||||||||||||||||    |||||||| |||||||||| ||||||  ||||| |||||||||||| ||||    
T  10130039 tgcatttctttgaagagatcaatagcttcatccaccattttaatcttacaaaatccattaatcatgatactgta 10129966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 19490167 - 19490084
Alignment:
Q  89 gtcatatttctggaatgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgata 172  Q
    ||||||||| |||||||||||||||  |||||| |  | ||||||| || ||||||  |||||| |||||| ||||||||||||    
T  19490167 gtcatatttgtggaatgcatttcttcaaagagacttaccgcttcatccaacattttcatcttacataatccattaatcatgata 19490084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 41316147 - 41316095
Alignment:
Q  128 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    |||||||| || |||||| ||||||  |||||||||||||||||||| |||||    
T  41316147 gcttcattgactattttaatcttacagaatccgttaatcatgatattatagct 41316095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 13904694 - 13904770
Alignment:
Q  104 tgcatttctttgaagagattcgcagcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    |||||||||||||||||||||   |||||||  ||||||||| |||||| ||| || ||||| |||||| |||||||    
T  13904694 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagct 13904770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 43406 - 43458
Alignment:
Q  128 gcttcattcaccattttattcttacgtaatccgttaatcatgatattgtagct 180  Q
    |||||||| ||||||||| ||||||  ||||| |||||||||||||| |||||    
T  43406 gcttcattgaccattttaatcttacaaaatccattaatcatgatattatagct 43458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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