View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6718_low_1 (Length: 715)
Name: NF6718_low_1
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6718_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 681; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 19 - 711
Target Start/End: Complemental strand, 46763641 - 46762949
Alignment:
| Q |
19 |
attcttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763641 |
attcttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgt |
46763542 |
T |
|
| Q |
119 |
tgctacaaaaatgctgctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttggtaaaattgaagtaggatacctatagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763541 |
tgctacaaaaatgctgctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttggtaaaattgaagtaggatacctatagtt |
46763442 |
T |
|
| Q |
219 |
ctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctgttcatagcaatgaagggtta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763441 |
ctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctgttcatagcaatgaagggtta |
46763342 |
T |
|
| Q |
319 |
taaacaatttgtgcaaatataaatatcagcattttaaatgataccatcaagaagaacttcaaaaggacatgattcaagaaatggttcacctgttttgctc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763341 |
taaacaatttgtgcaaatataaatatcagcattttaaatgataccatcaagaagaacttcaaaaggacatgattcaagaaatggttcacctgttttgctc |
46763242 |
T |
|
| Q |
419 |
tttttgattgtgcatggttctctctcagagaaactattcctacttccatattcaacctcacctcctaaagaaagaaaacagtaactgagtttatttggat |
518 |
Q |
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| T |
46763241 |
tttttgattgtgcatggttctctctcagagaagctattcctacttccatattcaacctcacctcctaaagaaggaaaacagtaactgagtttatttggat |
46763142 |
T |
|
| Q |
519 |
gccaagaaattgtagcaatctaacttattattcaacaaagataataattgaagaataaattgttgaaattgatcactattaaaaagtgaattttgaagaa |
618 |
Q |
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| T |
46763141 |
gccaagaaattgtagcaatctaacttattattcaacaaagataataattgaagaataaattgttgaaattgatcactattaaaaagtgaattttgaagaa |
46763042 |
T |
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| Q |
619 |
aaaacaaagatactaacctccataaacaacagcatctgcttgaatatcttcacatttgcttttgaaattaaaaaactttctaaccatattctt |
711 |
Q |
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| T |
46763041 |
aaaacaaagatactaacctccataaacaacagcatctgcttgaatatcttcacatttgcttttgaaattaaaaaactttctaaccattttctt |
46762949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 31829412 - 31829319
Alignment:
| Q |
22 |
cttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattcca |
115 |
Q |
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| T |
31829412 |
cttaccctagaacataaatatcagcaggaggagatgtatgaagccaatcttccagatttaaataactcggaggagatcgtccagctacattcca |
31829319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 1083826 - 1083734
Alignment:
| Q |
207 |
atacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctgt |
299 |
Q |
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|||||||||||| || ||||| ||||||| |||||||||||| ||||| || |||||||||||||||||| | |||||||||| |||||||| |
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| T |
1083826 |
atacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctcgcctaacctgactcgagttcctgctaaatttctctgt |
1083734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 1084013 - 1083899
Alignment:
| Q |
24 |
tacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgttgcta |
123 |
Q |
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||||||||||||||||| || || || ||||||| ||||||||||| | || ||||||||||| || ||||||||||| || ||||||||||| | | |
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| T |
1084013 |
tacccaagaacataaatatctgcaggcggtgaggcgtgaagccaatcgtttatgctcaaattactcggcggggatcttccggccacattccatgtaccaa |
1083914 |
T |
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| Q |
124 |
caaaaatgctgctca |
138 |
Q |
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| T |
1083913 |
caaaaatgctgctca |
1083899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 1083640 - 1083582
Alignment:
| Q |
406 |
acctgttttgctctttttgattgtgcatggttctctctcagagaaactattcctacttc |
464 |
Q |
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| T |
1083640 |
acctgttttgctctttttgattgtgcttggctctctctcagacaaactactcctgcttc |
1083582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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