View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6718_low_2 (Length: 677)

Name: NF6718_low_2
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6718_low_2
NF6718_low_2
[»] chr4 (22 HSPs)
chr4 (1-226)||(20440805-20441030)
chr4 (2-216)||(20451170-20451384)
chr4 (1-217)||(20444296-20444512)
chr4 (1-201)||(20432106-20432306)
chr4 (1-217)||(20279536-20279752)
chr4 (3-185)||(20477128-20477310)
chr4 (1-214)||(20462882-20463095)
chr4 (235-308)||(20444589-20444662)
chr4 (262-366)||(20279910-20280015)
chr4 (235-308)||(20432484-20432557)
chr4 (531-649)||(20451987-20452105)
chr4 (385-515)||(20433311-20433443)
chr4 (573-647)||(20445028-20445102)
chr4 (573-649)||(20433229-20433305)
chr4 (426-492)||(20445109-20445174)
chr4 (252-331)||(20451690-20451769)
chr4 (577-649)||(20463589-20463661)
chr4 (385-492)||(20463667-20463776)
chr4 (437-492)||(20280410-20280465)
chr4 (420-521)||(20452149-20452248)
chr4 (318-369)||(20463274-20463325)
chr4 (596-649)||(20280312-20280365)
[»] chr1 (3 HSPs)
chr1 (11-180)||(14266471-14266640)
chr1 (13-171)||(40978052-40978210)
chr1 (1-151)||(40967550-40967700)
[»] scaffold0951 (4 HSPs)
scaffold0951 (264-369)||(167-272)
scaffold0951 (128-217)||(1-90)
scaffold0951 (523-600)||(664-741)
scaffold0951 (437-521)||(965-1051)
[»] chr7 (1 HSPs)
chr7 (11-163)||(45483441-45483592)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 20440805 - 20441030
Alignment:
Q  1 gtctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggtt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||| |||||||||||||||| ||||||| |||    
T  20440805 gtctgaaatctctggtaattgaaagtgaaggttgggaatcttgatgcaaatggactcccatcttgtggataaaacacatgttctataagactcttttgtt 20440904  T
Q  101 gataggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacctgagctgaacacctga 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20440905 gataggaaagacaaaatatgacaaatcaaatcgtctgagagattgcttaatcaatcatgttctttatcagagcacgccatgacctgagctgaacacctga 20441004  T
Q  201 gtatagttatgacatgaccgggcaac 226  Q
    ||||||||||||||||||||||||||    
T  20441005 gtatagttatgacatgaccgggcaac 20441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 20451170 - 20451384
Alignment:
Q  2 tctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggttg 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20451170 tctgaattctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggttg 20451269  T
Q  102 ataggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacctgagctgaacacctgag 201  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||     
T  20451270 ataggaaagacaaaatatgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgtcatgacctgagcggaacacctgaa 20451369  T
Q  202 tatagttatgacatg 216  Q
    |||||||||||||||    
T  20451370 tatagttatgacatg 20451384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 20444296 - 20444512
Alignment:
Q  1 gtctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggtt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20444296 gtctgaaatctctggtaattgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaaaacatgttctataacactctttggtt 20444395  T
Q  101 gataggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacctgagctgaacacctga 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||| | ||    
T  20444396 gataggaaagacaaaatatgacaaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacctaatctgaacagcaga 20444495  T
Q  201 gtatagttatgacatga 217  Q
    ||| |||||||||||||    
T  20444496 gtaaagttatgacatga 20444512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 20432106 - 20432306
Alignment:
Q  1 gtctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggtt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||    
T  20432106 gtctgaaatctctggtaattgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttttggatagaacacatgttctataagactcttttgtt 20432205  T
Q  101 gataggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacctgagctgaacacctga 200  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  20432206 gataggaaagaacaaatatgacaaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacctgagctgaacacctga 20432305  T
Q  201 g 201  Q
    |    
T  20432306 g 20432306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 20279536 - 20279752
Alignment:
Q  1 gtctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggtt 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||    
T  20279536 gtctgaaatctctggtaattgaaaatgaaggttgggaatcttggtgcagattgactcccatcttgtggatagaacacatgttctataacactgttttgtt 20279635  T
Q  101 gataggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacctgagctgaacacctga 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| ||||||| ||| ||||| | ||    
T  20279636 gataggaaagacaaaatatgacaaatcaaatcgtctgagagattgcttaatcgatcatgttgttcatcagagcacgcgatgacctaagccgaacagcgga 20279735  T
Q  201 gtatagttatgacatga 217  Q
    ||| |||||||||||||    
T  20279736 gtaaagttatgacatga 20279752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 20477128 - 20477310
Alignment:
Q  3 ctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggttga 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  20477128 ctgaaatctctggtaattgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttttggatagaacacatgttctataagactcttttgttga 20477227  T
Q  103 taggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacct 185  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20477228 taggaaagacaaaatatgacaaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacct 20477310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20462882 - 20463095
Alignment:
Q  1 gtctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggtt 100  Q
    |||||||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||    
T  20462882 gtctgaaatctctggtaattcaaagcgaaggctgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctgtaagactcttttgtt 20462981  T
Q  101 gataggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacctgagctgaacacctga 200  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||| | ||    
T  20462982 gataggaaagacaaaatatgacaaatcaaatcgtctgggagattgcttaatcgatcgtgttcttcatcagagcacgccatgacctaatctgaacagcaga 20463081  T
Q  201 gtatagttatgaca 214  Q
    ||| ||||||||||    
T  20463082 gtaaagttatgaca 20463095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 20444589 - 20444662
Alignment:
Q  235 aaatgttactgaagctgtcataattagagacatgatttcgacaagggaaacttgcaagatgtaataaaaagagt 308  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  20444589 aaatgttactgaagctgtcataattatagacatgatttcgacaagggaaacttgcaatatgtaataaaaagagt 20444662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 20279910 - 20280015
Alignment:
Q  262 agacatgatttcgacaagggaaacttgcaagatgtaataaaaagagtgaaaatgtacaatgattttattaagtcagaaattc-aactgctaagttccaat 360  Q
    |||||||||||||| ||||||||||||||| |||||||||||| ||| | |||| |||||||||||||||| ||||||| || ||||||||||||| |||    
T  20279910 agacatgatttcgagaagggaaacttgcaaaatgtaataaaaacagtcagaatgcacaatgattttattaactcagaaactcaaactgctaagttcaaat 20280009  T
Q  361 gacatt 366  Q
    ||||||    
T  20280010 gacatt 20280015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 20432484 - 20432557
Alignment:
Q  235 aaatgttactgaagctgtcataattagagacatgatttcgacaagggaaacttgcaagatgtaataaaaagagt 308  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  20432484 aaatgtgactgaagctgtcataattatagacatgatttcgacaagggaaacttgcaatatgtaataataagagt 20432557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 531 - 649
Target Start/End: Original strand, 20451987 - 20452105
Alignment:
Q  531 aaagaacaacaacggtgagcacgcacgcaccttttgaattcgtgagttcagagtaacggacagaggtgaacgttgttgtactagtggttttctgtagaaa 630  Q
    |||||| ||||  ||||||| | ||||||||||||||| |||||| | |||||||||||| | ||||||||||||||| | | | ||||||||| |||||    
T  20451987 aaagaagaacagaggtgagctcacacgcaccttttgaactcgtgattgcagagtaacggaaataggtgaacgttgttggatttgcggttttctgcagaaa 20452086  T
Q  631 caaacaaatatgaattaga 649  Q
    |||||||||| ||||||||    
T  20452087 caaacaaataggaattaga 20452105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 385 - 515
Target Start/End: Original strand, 20433311 - 20433443
Alignment:
Q  385 agaatagttctgcaaatgtaacaactatacaaga---aaaattcaagtttctgatatcagaatttgaagaaagtgtatgagaaattttaacgaacatgtt 481  Q
    ||||||||  ||||||||||||||||||| || |   |||| |||||||||||| ||||||||||||| ||| | |||||| | ||||||| ||||||||    
T  20433311 agaatagtgttgcaaatgtaacaactatataacattaaaaaatcaagtttctgagatcagaatttgaacaaactctatgaggacttttaacaaacatgtt 20433410  T
Q  482 aagtgcataattaaataaaggggaaatgtgaaga 515  Q
    |||||||||| |||| |||| || ||||||||||    
T  20433411 aagtgcataa-taaaaaaagtgggaatgtgaaga 20433443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 647
Target Start/End: Original strand, 20445028 - 20445102
Alignment:
Q  573 tgagttcagagtaacggacagaggtgaacgttgttgtactagtggttttctgtagaaacaaacaaatatgaatta 647  Q
    |||||||||||||||||| || |||||||||||||||| | | ||||||||||| ||||||||||||||||||||    
T  20445028 tgagttcagagtaacggaaaggggtgaacgttgttgtattcgcggttttctgtataaacaaacaaatatgaatta 20445102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 573 - 649
Target Start/End: Original strand, 20433229 - 20433305
Alignment:
Q  573 tgagttcagagtaacggacagaggtgaacgttgttgtactagtggttttctgtagaaacaaacaaatatgaattaga 649  Q
    ||||||||||| |||||| |||||||||| |||||||| | ||| |||||||||||| |||||||||||||||||||    
T  20433229 tgagttcagagcaacggaaagaggtgaaccttgttgtattcgtgcttttctgtagaatcaaacaaatatgaattaga 20433305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 492
Target Start/End: Original strand, 20445109 - 20445174
Alignment:
Q  426 aagtttctgatatcagaatttgaagaaagtgtatgagaaattttaacgaacatgttaagtgcataat 492  Q
    |||||||||| |||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||    
T  20445109 aagtttctga-atcagaatttgaagaaagtgaatgaggagttttaacaaacatgttaagtgcataat 20445174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 20451690 - 20451769
Alignment:
Q  252 tcataattagagacatgatttcgacaagggaaacttgcaagatgtaataaaaagagtgaaaatgtacaatgattttatta 331  Q
    ||||||||| |||||||||||||||||||||||||||| | | || ||||||| ||| | |||| |||||||| ||||||    
T  20451690 tcataattatagacatgatttcgacaagggaaacttgcgacaagtgataaaaacagtcagaatgcacaatgatattatta 20451769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 649
Target Start/End: Original strand, 20463589 - 20463661
Alignment:
Q  577 ttcagagtaacggacagaggtgaacgttgttgtactagtggttttctgtagaaacaaacaaatatgaattaga 649  Q
    ||||||||||| || ||||| || |||||||||| | | | |||||||||||||||||||||||| |||||||    
T  20463589 ttcagagtaacagaaagaggcgagcgttgttgtattcgcgcttttctgtagaaacaaacaaatatcaattaga 20463661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 492
Target Start/End: Original strand, 20463667 - 20463776
Alignment:
Q  385 agaatagttctgcaaatgtaacaactata---caagaaaaattcaagtttctgatatcagaatttgaagaaagtgtatgagaaattttaacgaacatgtt 481  Q
    |||||||||||||||||||| ||| ||||   ||  ||||| | |||||||||| ||||||||||||||||| | || ||| | ||||||| ||||||||    
T  20463667 agaatagttctgcaaatgtagcaattatatatcattaaaaaataaagtttctga-atcagaatttgaagaaactctaggaggagttttaacaaacatgtt 20463765  T
Q  482 aagtgcataat 492  Q
    | |||||||||    
T  20463766 atgtgcataat 20463776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 492
Target Start/End: Original strand, 20280410 - 20280465
Alignment:
Q  437 atcagaatttgaagaaagtgtatgagaaattttaacgaacatgttaagtgcataat 492  Q
    ||||||| ||||||||| |||||||| | ||||||| |||||||||||||||||||    
T  20280410 atcagaaattgaagaaaatgtatgaggagttttaacaaacatgttaagtgcataat 20280465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 420 - 521
Target Start/End: Original strand, 20452149 - 20452248
Alignment:
Q  420 aaattcaagtttctgatatcagaatttgaagaaagtgtatgagaaattttaacgaacatgttaagtgcataat-taaataaaggggaaatgtgaagattg 518  Q
    |||||||||||| ||| ||||||||||||||||  |||||    | ||||||| |||||||||||||||||||  ||| |||||| ||||||||||||||    
T  20452149 aaattcaagtttgtga-atcagaatttgaagaa--tgtattcagagttttaacaaacatgttaagtgcataataaaaacaaagggaaaatgtgaagattg 20452245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 20463274 - 20463325
Alignment:
Q  318 caatgattttattaagtcagaaattcaactgctaagttccaatgacattttt 369  Q
    ||||| |||||| |||||||||| |||| |||||||||||||||||||||||    
T  20463274 caatgtttttataaagtcagaaactcaagtgctaagttccaatgacattttt 20463325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 649
Target Start/End: Original strand, 20280312 - 20280365
Alignment:
Q  596 gtgaacgttgttgtactagtggttttctgtagaaacaaacaaatatgaattaga 649  Q
    ||||||||||||||||| |    |||||||||||||||||||||||||||||||    
T  20280312 gtgaacgttgttgtactggcacctttctgtagaaacaaacaaatatgaattaga 20280365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 14266640 - 14266471
Alignment:
Q  11 tctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggttgataggaaag 110  Q
    ||||| |||| ||||||||||| ||| || |||||| |||| |||  ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  14266640 tctggaaattcaaagtgaaggtcagggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaag 14266541  T
Q  111 acaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccat 180  Q
    ||||||||  | |||||||||| || ||||||||||||||||| |||| ||||  || ||||||||||||    
T  14266540 acaaaatacaataaatcaaatcgtccgagagattgcttaatcggtcatattctacataagagcacgccat 14266471  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 40978210 - 40978052
Alignment:
Q  13 tggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggttgataggaaagac 112  Q
    |||||||| ||||| |||||| || ||||| ||||| ||||||||||||||||| |||||||||| |||||  ||| ||||||| |||| ||||||||||    
T  40978210 tggtaattcaaagtcaaggttggggatctttgtgcatatcgactcccatcttgtagatagaacacttgttcggtaagactcttttgttgttaggaaagac 40978111  T
Q  113 aaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttctttatcaga 171  Q
    |||||||||  |||||| || |||||||||||||||||||| || || |||| ||||||    
T  40978110 aaaatatgaataatcaattcgtctgagagattgcttaatcggtcctgctcttcatcaga 40978052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 40967700 - 40967550
Alignment:
Q  1 gtctgaaatctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggtt 100  Q
    ||||||||| | ||||| || ||||| |||||  || ||||||||||||||||||||||||||||||||||| ||||| ||| | | | ||||||| |||    
T  40967700 gtctgaaatatttggtagtttaaagttaaggtcggggatcttggtgcagatcgactcccatcttgtggatagtacacaagttttgtgagactcttttgtt 40967601  T
Q  101 gataggaaagacaaaatatgacaaatcaaatcatctgagagattgcttaat 151  Q
    |||||||||||||||||| || ||||||| || |||||||||| |||||||    
T  40967600 gataggaaagacaaaatacgaaaaatcaattcgtctgagagatcgcttaat 40967550  T

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Target: scaffold0951 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 264 - 369
Target Start/End: Original strand, 167 - 272
Alignment:
Q  264 acatgatttcgacaagggaaacttgcaagatgtaataaaaagagtgaaaatgtacaatgattttattaagtcagaaattcaactgctaagttccaatgac 363  Q
    |||||||||||||||||||||||||| ||| || ||||||| ||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  167 acatgatttcgacaagggaaacttgcgagaagtgataaaaacagtcagaatgcacaatgattttattaagtcagaaattcaagtgctaagttccaatgac 266  T
Q  364 attttt 369  Q
    ||||||    
T  267 attttt 272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 1 - 90
Alignment:
Q  128 aaatcatctgagagattgcttaatcgatcatgttctttatcagagcacgccatgacctgagctgaacacctgagtatagttatgacatga 217  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||| | ||||| |||||||||||||    
T  1 aaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccatgacctaatctgaacagcagagtaaagttatgacatga 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 600
Target Start/End: Original strand, 664 - 741
Alignment:
Q  523 tcagagaaaaagaacaacaacggtgagcacgcacgcaccttttgaattcgtgagttcagagtaacggacagaggtgaa 600  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  664 tcagagaaaaagaataacaacggtgatctcgcacgcaccttttgaatttgtgagttcagagtaacggaaagaggtgaa 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 437 - 521
Target Start/End: Original strand, 965 - 1051
Alignment:
Q  437 atcagaatttgaagaaagtgtatgagaaattttaacgaacatgttaagtgcataatt--aaataaaggggaaatgtgaagattgtga 521  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||  ||| |||||||||||||||| |||||||    
T  965 atcagaatttgaagaaagtgtatgaggagttttaacaaacatgttaagtgcatgattaaaaagaaaggggaaatgtgaaaattgtga 1051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 45483592 - 45483441
Alignment:
Q  11 tctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataacactctttggttgataggaaag 110  Q
    ||||| |||| |||||||||||  || || |||||| ||||| ||  ||||||  | ||||||||||||||||||||| ||||||| |||||||||||||    
T  45483592 tctggaaattcaaagtgaaggtcggggattttggtgtagatcaacctccatcta-tagatagaacacatgttctataagactctttagttgataggaaag 45483494  T
Q  111 acaaaatatgacaaatcaaatcatctgagagattgcttaatcgatcatgttct 163  Q
    |||||||| || |||||||||| || ||||||||||||||||| |||| ||||    
T  45483493 acaaaatacgataaatcaaatcgtccgagagattgcttaatcggtcatattct 45483441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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