View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6718_low_3 (Length: 648)
Name: NF6718_low_3
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6718_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 34 - 630
Target Start/End: Original strand, 11313877 - 11314473
Alignment:
| Q |
34 |
attaggcttgagattttgattattggggtgaaaacattactagttaccattcattttcttgtatgcttgagcttttgattcttggattgttataacatta |
133 |
Q |
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| T |
11313877 |
attaggcttgagattttgattattggggtgaaaacattactagttaccattcattttcttgtatgcttgagcttttgattcttggattgttataacatta |
11313976 |
T |
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| Q |
134 |
tactatacctcannnnnnnncttttatgaatgnnnnnnnnttagacttttgattgaattatcttgtagttttaagcttttgaattttgggttgtgacaat |
233 |
Q |
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| T |
11313977 |
tactatacctcattttttttcttttatgaatgaaaaaaaattagacttttgattgaattatcttgtagttttaagcttttgaattttgggttgtgacaat |
11314076 |
T |
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| Q |
234 |
attatcaccccattttttaattatgtaaaaagactaaagttttgattaaattttcttgtagggttgagcttttgattcttgggttgtgtgacaacattaa |
333 |
Q |
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| T |
11314077 |
attatcacctcattttttaattatgtaaaaagactaaagttttgattaaattttcttgtagggttgagcttttgattcttgggttgtgtgacaacattaa |
11314176 |
T |
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| Q |
334 |
actgcacgtcaaagttaacaagtttaagactgtttggttggtgtgttcaaaaaatggaaacttgtacggctctattacttttaacggccataacagctta |
433 |
Q |
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| T |
11314177 |
actgcacatcaaagttaacaagtttaagactgtttggttggtgtgttcaaaaaatggaaacttgtacggctctattacttttaacggccataacagctta |
11314276 |
T |
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| Q |
434 |
cttgctttggttcaccttcatctcacggtcattgagaggcccacgtgtctggccactattgggcagtctaccaggcctcattgagaattgtgaacgtatg |
533 |
Q |
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| T |
11314277 |
cttgctttggttcaccttcatctcacggtcattgagaggcccacgtgtctggccactattgggcagtctaccgggcctcattgagaattgtgaacgtatg |
11314376 |
T |
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| Q |
534 |
catgattggatctgtgacaacctacgcgcgtgtggtggcacgtaccagacctgcatctgtgcaatcccatttttagccaagaagcaagggctcgtga |
630 |
Q |
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| T |
11314377 |
catgattggatctgtgacaacctacgcgcgtgtggtggcacgtaccagacctgcatctgtgcaatcccatttttagccaagaagcaagggctcgtga |
11314473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11313829 - 11313862
Alignment:
| Q |
1 |
actataccccatttttgtatttatggaagaaaaa |
34 |
Q |
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| T |
11313829 |
actataccccatttttgtatttatggaagaaaaa |
11313862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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