View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6718_low_4 (Length: 597)

Name: NF6718_low_4
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6718_low_4
NF6718_low_4
[»] chr5 (23 HSPs)
chr5 (2-597)||(8858744-8859337)
chr5 (229-442)||(35310502-35310715)
chr5 (228-383)||(32269696-32269851)
chr5 (228-325)||(13166867-13166964)
chr5 (228-292)||(37873628-37873692)
chr5 (228-442)||(43129587-43129800)
chr5 (228-289)||(25663025-25663086)
chr5 (232-292)||(15292016-15292076)
chr5 (228-383)||(33691954-33692109)
chr5 (231-277)||(35456012-35456058)
chr5 (228-289)||(3114156-3114217)
chr5 (228-464)||(27336746-27336982)
chr5 (228-273)||(14423731-14423776)
chr5 (228-292)||(26212573-26212637)
chr5 (228-275)||(34335390-34335437)
chr5 (228-275)||(38875691-38875738)
chr5 (233-274)||(7143764-7143805)
chr5 (228-269)||(19260355-19260396)
chr5 (350-383)||(38446341-38446374)
chr5 (228-277)||(42921750-42921799)
chr5 (358-442)||(7716359-7716443)
chr5 (231-277)||(13307412-13307458)
chr5 (232-262)||(16598963-16598993)
[»] chr6 (21 HSPs)
chr6 (268-464)||(26225408-26225603)
chr6 (228-325)||(17249262-17249359)
chr6 (228-383)||(4206495-4206650)
chr6 (228-279)||(24016390-24016441)
chr6 (233-383)||(357616-357766)
chr6 (228-292)||(34304549-34304613)
chr6 (245-325)||(28008944-28009024)
chr6 (350-414)||(28543550-28543614)
chr6 (228-383)||(959633-959788)
chr6 (228-275)||(29338086-29338133)
chr6 (132-214)||(32115651-32115734)
chr6 (344-533)||(32115858-32116048)
chr6 (228-275)||(34554284-34554331)
chr6 (228-274)||(4165930-4165976)
chr6 (228-289)||(45670-45731)
chr6 (233-290)||(3714975-3715032)
chr6 (228-289)||(33220704-33220765)
chr6 (228-274)||(34415489-34415535)
chr6 (234-275)||(7200544-7200585)
chr6 (134-222)||(13398265-13398354)
chr6 (228-325)||(34168921-34169018)
[»] chr1 (20 HSPs)
chr1 (228-383)||(34644619-34644774)
chr1 (228-533)||(28040875-28041181)
chr1 (228-292)||(19035500-19035564)
chr1 (228-291)||(20259788-20259851)
chr1 (228-275)||(21473056-21473103)
chr1 (228-386)||(50161313-50161471)
chr1 (228-283)||(37200035-37200090)
chr1 (228-275)||(45659655-45659702)
chr1 (228-290)||(2764532-2764594)
chr1 (228-332)||(23043930-23044034)
chr1 (228-292)||(31737313-31737377)
chr1 (228-284)||(50314622-50314678)
chr1 (231-290)||(22346951-22347010)
chr1 (228-275)||(29169800-29169847)
chr1 (350-441)||(37932059-37932150)
chr1 (234-289)||(42919919-42919973)
chr1 (350-464)||(29169612-29169726)
chr1 (172-221)||(2898676-2898725)
chr1 (358-435)||(4861836-4861913)
chr1 (228-292)||(25375823-25375887)
[»] chr7 (31 HSPs)
chr7 (233-442)||(4501316-4501525)
chr7 (228-533)||(28517035-28517341)
chr7 (228-292)||(19277346-19277410)
chr7 (228-324)||(21326796-21326892)
chr7 (228-383)||(32584654-32584809)
chr7 (228-292)||(983002-983066)
chr7 (228-292)||(22198039-22198103)
chr7 (228-292)||(22239718-22239782)
chr7 (228-292)||(30216048-30216112)
chr7 (232-275)||(9281138-9281181)
chr7 (232-275)||(9292109-9292152)
chr7 (350-464)||(45613660-45613774)
chr7 (228-292)||(3676692-3676756)
chr7 (232-292)||(27521528-27521588)
chr7 (350-442)||(43857049-43857141)
chr7 (228-291)||(2904418-2904481)
chr7 (228-442)||(5825326-5825538)
chr7 (228-274)||(24527642-24527688)
chr7 (228-292)||(42295174-42295238)
chr7 (228-283)||(25186935-25186990)
chr7 (136-222)||(27521408-27521495)
chr7 (228-315)||(43383222-43383309)
chr7 (228-275)||(45613849-45613896)
chr7 (228-290)||(34772834-34772896)
chr7 (349-383)||(38839501-38839535)
chr7 (228-292)||(23037596-23037661)
chr7 (132-216)||(42295273-42295358)
chr7 (256-292)||(1249667-1249703)
chr7 (352-392)||(10905282-10905322)
chr7 (232-292)||(26770454-26770514)
chr7 (228-260)||(40726502-40726534)
[»] chr2 (24 HSPs)
chr2 (350-464)||(10579597-10579711)
chr2 (228-442)||(4412906-4413120)
chr2 (232-464)||(27502419-27502650)
chr2 (228-464)||(28225053-28225289)
chr2 (228-292)||(41867898-41867962)
chr2 (228-383)||(9685314-9685469)
chr2 (228-284)||(2888569-2888625)
chr2 (228-292)||(19161773-19161837)
chr2 (232-323)||(5532476-5532567)
chr2 (228-291)||(23484929-23484992)
chr2 (228-291)||(34814810-34814873)
chr2 (246-383)||(7760745-7760882)
chr2 (136-214)||(17344575-17344654)
chr2 (350-386)||(3825902-3825938)
chr2 (139-214)||(13413291-13413367)
chr2 (127-214)||(41867999-41868087)
chr2 (246-293)||(13147086-13147133)
chr2 (228-275)||(18744961-18745008)
chr2 (228-275)||(29808128-29808174)
chr2 (350-464)||(17344813-17344927)
chr2 (231-292)||(1296040-1296101)
chr2 (233-290)||(16351833-16351890)
chr2 (350-383)||(44686594-44686627)
chr2 (231-275)||(44720379-44720423)
[»] chr3 (24 HSPs)
chr3 (228-442)||(49018016-49018230)
chr3 (228-383)||(13582562-13582717)
chr3 (228-291)||(37132990-37133053)
chr3 (228-283)||(7502010-7502066)
chr3 (228-292)||(39583219-39583283)
chr3 (228-292)||(44198820-44198884)
chr3 (228-383)||(7900911-7901066)
chr3 (228-275)||(52741519-52741566)
chr3 (232-277)||(38670885-38670930)
chr3 (232-462)||(43123202-43123431)
chr3 (228-275)||(53785762-53785809)
chr3 (228-290)||(26772811-26772873)
chr3 (228-292)||(3443302-3443366)
chr3 (352-464)||(29861974-29862086)
chr3 (228-384)||(46940668-46940824)
chr3 (228-275)||(32546848-32546895)
chr3 (232-274)||(4473118-4473160)
chr3 (228-290)||(37992385-37992447)
chr3 (191-220)||(2601800-2601829)
chr3 (228-289)||(38146109-38146170)
chr3 (136-215)||(13582447-13582527)
chr3 (229-277)||(26856767-26856815)
chr3 (350-382)||(35236381-35236413)
chr3 (352-468)||(52411716-52411832)
[»] chr8 (17 HSPs)
chr8 (228-383)||(24125081-24125236)
chr8 (228-288)||(38815347-38815407)
chr8 (228-292)||(39434720-39434784)
chr8 (228-442)||(500280-500494)
chr8 (228-292)||(6592628-6592692)
chr8 (228-292)||(6618337-6618401)
chr8 (228-464)||(25021632-25021868)
chr8 (228-283)||(10189596-10189651)
chr8 (234-292)||(8540367-8540425)
chr8 (350-435)||(35739834-35739919)
chr8 (227-284)||(35739984-35740041)
chr8 (228-292)||(8882380-8882444)
chr8 (228-274)||(3188022-3188068)
chr8 (232-338)||(4073592-4073697)
chr8 (233-298)||(10556277-10556342)
chr8 (232-316)||(166216-166300)
chr8 (351-387)||(4686908-4686944)
[»] chr4 (27 HSPs)
chr4 (235-533)||(50000673-50000972)
chr4 (228-383)||(53619639-53619794)
chr4 (228-442)||(30940579-30940793)
chr4 (228-292)||(12053466-12053530)
chr4 (228-292)||(55933452-55933516)
chr4 (228-292)||(56462097-56462160)
chr4 (233-383)||(26521546-26521696)
chr4 (350-533)||(3330125-3330309)
chr4 (228-292)||(23255757-23255821)
chr4 (228-464)||(31847140-31847376)
chr4 (231-386)||(25504351-25504504)
chr4 (243-325)||(12918329-12918411)
chr4 (232-289)||(41440075-41440132)
chr4 (127-222)||(4419191-4419287)
chr4 (228-275)||(600699-600746)
chr4 (228-291)||(46440880-46440943)
chr4 (228-274)||(132438-132484)
chr4 (360-442)||(18534585-18534667)
chr4 (136-221)||(56462190-56462276)
chr4 (350-383)||(56462006-56462039)
chr4 (228-276)||(28883157-28883205)
chr4 (361-464)||(25706695-25706798)
chr4 (228-283)||(45386060-45386115)
chr4 (186-216)||(46391403-46391433)
chr4 (241-283)||(53170573-53170615)
chr4 (132-216)||(55933549-55933634)
chr4 (233-277)||(45760839-45760883)
[»] scaffold0148 (1 HSPs)
scaffold0148 (228-274)||(33303-33349)
[»] scaffold0470 (1 HSPs)
scaffold0470 (228-292)||(7655-7719)
[»] scaffold0493 (1 HSPs)
scaffold0493 (228-325)||(8473-8570)
[»] scaffold0490 (1 HSPs)
scaffold0490 (228-292)||(6387-6451)
[»] scaffold0031 (1 HSPs)
scaffold0031 (228-289)||(49464-49525)
[»] scaffold0119 (1 HSPs)
scaffold0119 (232-292)||(16191-16251)
[»] scaffold0224 (1 HSPs)
scaffold0224 (234-289)||(18358-18412)
[»] scaffold0085 (1 HSPs)
scaffold0085 (236-289)||(37391-37444)
[»] scaffold1768 (1 HSPs)
scaffold1768 (228-324)||(142-238)


Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 2 - 597
Target Start/End: Original strand, 8858744 - 8859337
Alignment:
Q  2 caatagttaacgaccagagatttttagaaattgagannnnnnnccctaagaaaaagaagttagttacaataatacctattcttgagaactagtttatatt 101  Q
    |||||||||||||| |||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8858744 caatagttaacgacaagagatttttagaaattgagatttttttccctaggaaaaagaagttagttacaataatacctattcttgagcactagtttatatt 8858843  T
Q  102 acacatgaatggaagacaaacgagcaaccgatcatcgtaaacactacatttatggacctaggagaccttaattgttatttatgctcttttgaactttatg 201  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||| |||    
T  8858844 acacatgaatggaagacaaacgagcaaccaatcattgcaaacactacatttatggatttaggagaccttaattgttatttatggtcttttgaactt-atg 8858942  T
Q  202 tagaaggtcaacaacttctgaagcttaatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtg 301  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  8858943 tagaaggtcaacaacttctgaagcttaatgatataaaaacatgttgattgtcagaacacgctttctcatgtttgactactttgcttgacgcagttttgtg 8859042  T
Q  302 ggttgcttgtcccaccgtaaaagctatggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtac 401  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859043 ggttgcttgtcccaccgtaaaagctatggtccctaatctcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtac 8859142  T
Q  402 atcataacatctgttggcctaagtgttgatcttccatctagccggtgagacaaaaagttcacaaacgcatcatttttcgcagatactcccatcgtcagaa 501  Q
    |||||||||| |||| ||||||||| |||||||| ||||||| |||||| |||||||||||||||||  |||||||||  ||||||||||||||||||||    
T  8859143 atcataacatttgttagcctaagtg-tgatcttctatctagctggtgaggcaaaaagttcacaaacgtctcatttttcatagatactcccatcgtcagaa 8859241  T
Q  502 tatatgaaaaggaacatccttaacaaagtcatctgnnnnnnnnngaaacacatatacattagtttgagatattattgttattagtgttgttatcaa 597  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859242 tatatgaaaaggaacatccttaacaaagtcatctgaaaaaaaaagaaacacatatacattagtttgagatattattgttattagtgttgttatcaa 8859337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 229 - 442
Target Start/End: Original strand, 35310502 - 35310715
Alignment:
Q  229 atggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctat 328  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||| | |||||| |||||||   |||  ||||||  ||||| |||||||||||       
T  35310502 atggtataaaagcatgttgattgtcagaacatgctttctcatgtttggccactttgcttgacgcatcttttagggttgtctgtcctaccgtaaaagcccc 35310601  T
Q  329 ggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgtt 428  Q
    |  ||||||   || ||||  ||||||| || ||||||||||||||||||||||| || | | | |   ||||||||||||||| |   |||||||||||    
T  35310602 gacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctccaacccatccgtacatcataacatccgcaagcctaagtgtt 35310701  T
Q  429 gatcttccatctag 442  Q
    ||||||| ||||||    
T  35310702 gatcttctatctag 35310715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 32269851 - 32269696
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||||||| |||||| |||| || | |||  ||||||| ||||| ||| ||||||       
T  32269851 aatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgaccactttggttgatgcagcttttagggttgcatgtcctaccataaaaggcc 32269752  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
     |   ||||||| |||||||  ||||||| |||||||||| |||||||||||||||    
T  32269751 cgacacctaattccagaagtggtgaaaccccagtcaagtctacacatgcatgtttt 32269696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 13166964 - 13166867
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagc 325  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||  | |||||| ||||||| | |||  ||||||  |||||||||||||||||    
T  13166964 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttagccactttgcttgacgcagattttagggttgtctgtcccaccgtaaaagc 13166867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 37873692 - 37873628
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||||    
T  37873692 aatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgc 37873628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 442
Target Start/End: Original strand, 43129587 - 43129800
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||| |||||||   |||  ||  ||  ||||| |||||||||| |     
T  43129587 aatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttgaccactttgcttgacgcatcttttaggactgaatgtccaaccgtaaaagttc 43129686  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
     |  |||||||   | ||||  ||||||| ||||||| | ||||||||||| |||| || ||||| |   |||||||||||||||||   ||||||||||    
T  43129687 cgacccctaatccaacaagtggtgaaaccccagtcaatttcacacatgcat-ttttcctcctatccatccgtacatcataacatctgcatgcctaagtgt 43129785  T
Q  428 tgatcttccatctag 442  Q
     ||||||| ||||||    
T  43129786 cgatcttctatctag 43129800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 25663086 - 25663025
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||    
T  25663086 aatggtataaaaacatgttgattatcagaacacgctttctcatgtttggccactttgtttga 25663025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 15292076 - 15292016
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||    
T  15292076 gtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgc 15292016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 33692109 - 33691954
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||| |||| |||||||||||| | |||||| ||| ||||||||| | |||||| ||||||| | |||  ||  ||| ||||| |||||||||||      
T  33692109 aatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcctgtcctaccgtaaaagccc 33692010  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
     |  ||||||   || ||||  ||||||||||||||||||||||||||||||||||    
T  33692009 cgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgtttt 33691954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 35456012 - 35456058
Alignment:
Q  231 ggtataaaaacatgttgattgttagaacacgctttctcatgtttgac 277  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  35456012 ggtataaaagcatgttgattgttagaacacgctttctcatgtttgac 35456058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 3114217 - 3114156
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||||| | |||||||||||    
T  3114217 aatggtataaaaacatgttgactgtcagaacatgctttctcatgtttggccactttgtttga 3114156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 464
Target Start/End: Original strand, 27336746 - 27336982
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||||||||  ||||||||||| |||||||| ||||||||||||||| |||||| |||||||   |||  ||| ||  ||||| |  ||||||||      
T  27336746 aatggtataaaagtatgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacgcaacttttagggctgtctgtcctattgtaaaagccc 27336845  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
        ||||||   || ||||  ||||||| |||||||||||||||||||||||||| || | | | |   ||||| ||||||||| |  |||||||||||    
T  27336846 ccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgt 27336945  T
Q  428 tgatcttccatctagccggtgagacaaaaagttcaca 464  Q
     ||||||| ||||||  ||| || || ||||||||||    
T  27336946 cgatcttctatctagtgggtcagtcagaaagttcaca 27336982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 14423731 - 14423776
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtt 273  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||    
T  14423731 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtt 14423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 26212637 - 26212573
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| ||||||||| || |||| ||||||||||||||||| | |||||| |||||||    
T  26212637 aatggtataaaagcatgttgatcgtcagaatacgctttctcatgtttggccactttgcttgacgc 26212573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 34335390 - 34335437
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||    
T  34335390 aatggtataaaagcatgttgattgtcaggacacgctttctcatgtttg 34335437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 38875691 - 38875738
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  38875691 aatggtacaaaaacatgttgattgtcagaacacactttctcatgtttg 38875738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 7143764 - 7143805
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  7143764 tataaaaacatgttgattgttaaaacacgttttctcatgttt 7143805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 19260355 - 19260396
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctca 269  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  19260355 aatgatataaaaacatgttgattgttcgaacacgctttctca 19260396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 38446341 - 38446374
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    ||||||||||||||||||||||||||||||||||    
T  38446341 tgaaacctcagtcaagtccacacatgcatgtttt 38446374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 42921750 - 42921799
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgac 277  Q
    |||||||||||| |||||||||||| |||||||| |||||| ||||||||    
T  42921750 aatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttgac 42921799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 442
Target Start/End: Original strand, 7716359 - 7716443
Alignment:
Q  358 cagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctag 442  Q
    |||||||||| ||| ||||||||||| || |||||||   |||||  |||||||||||||| |||| ||| |||||| |||||||    
T  7716359 cagtcaagtctacaaatgcatgttttcctcctatcaatatgtacacgataacatctgttggtctaaatgtcgatctttcatctag 7716443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 13307412 - 13307458
Alignment:
Q  231 ggtataaaaacatgttgattgttagaacacgctttctcatgtttgac 277  Q
    ||||||||||||||||||| || |||| || ||||||||||||||||    
T  13307412 ggtataaaaacatgttgatagtaagaatacactttctcatgtttgac 13307458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 262
Target Start/End: Original strand, 16598963 - 16598993
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgc 262  Q
    |||||||||||||||||||||||||||||||    
T  16598963 gtataaaaacatgttgattgttagaacacgc 16598993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 268 - 464
Target Start/End: Complemental strand, 26225603 - 26225408
Alignment:
Q  268 catgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggtccctaatttcagaagtaatgaaacctcagtcaagtc 367  Q
    |||||||||| | |||||||||||||  |||| ||||||| | || ||||||||||||  ||||||  ||| ||| |||||||||||||||||||||||     
T  26225603 catgtttgaccattttgtttgacgcgactttgagggttgcatatctcaccgtaaaagccttggtcctcaatctcacaagtaatgaaacctcagtcaagtt 26225504  T
Q  368 cacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtgagacaaaaagttcaca 464  Q
    |||| ||| |||||||||||||| | ||  | |||  ||||||| || |||||||| |||||||||| |||||||  ||| |||||| |||||||||    
T  26225503 cacatatgaatgtttttcttctaaccacgcgcacacaataacatatgctggcctaattgttgatctttcatctag-gggtaagacaagaagttcaca 26225408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 17249359 - 17249262
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagc 325  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||||| | ||||||||||||||   |||  |||||| |||||| |||||||||||    
T  17249359 aatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttttagggttgtttgtcctaccgtaaaagc 17249262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 4206650 - 4206495
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||| ||||||| |||||| ||||| |||||||||||||||||||||  | |||||| |||||||   |||   || ||| ||||| |||||||||| |     
T  4206650 aatgatataaaagcatgttcattgtcagaacacgctttctcatgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtc 4206551  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    || | ||||||  || ||||  ||||||| |||||||||| |||||||||||||||    
T  4206550 tgatgcctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgtttt 4206495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 24016390 - 24016441
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgacta 279  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  24016390 aatggtataaaaacatgttgattgtgagaacaagctttctcatgtttgacta 24016441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 383
Target Start/End: Complemental strand, 357766 - 357616
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggtc 332  Q
    ||||||| |||||| ||||| |||||||||||||||||||||| | |||||| ||||||  | |||  ||| ||| ||||| |||||||||||   |  |    
T  357766 tataaaagcatgttcattgtcagaacacgctttctcatgtttggccactttgcttgacgaagcttttagggctgcctgtcctaccgtaaaagcaccgacc 357667  T
Q  333 cctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    |||||   || ||||  ||||||  ||||||||||||||||||||||||||    
T  357666 cctaaacccacaagtggtgaaactccagtcaagtccacacatgcatgtttt 357616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 34304549 - 34304613
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||  || |||| |||||||    
T  34304549 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggttattttgcttgacgc 34304613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 28009024 - 28008944
Alignment:
Q  245 ttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagc 325  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||||||  | |||  ||||||| ||||| |||||||||||    
T  28009024 ttgattgttagaacaagctttctcatgtttgaccgctttgcttgacgtagcttttagggttgcatgtcctaccgtaaaagc 28008944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 28543550 - 28543614
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctg 414  Q
    ||||||||||||||| |||||||||||||||||| || ||||| |   |||||||||||||||||    
T  28543550 tgaaacctcagtcaaatccacacatgcatgttttcctcctatccatctgtacatcataacatctg 28543614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 959633 - 959788
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||| ||  | |||||| ||||| |   |||  |||||| |||||| ||||||||||       
T  959633 aatggtataaagacatgttgattgtcagaacacgttttctcatggttagccactttgcttgacacaacttttagggttgtttgtcctaccgtaaaaggcc 959732  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
     |   ||||||  || ||||  |||||| ||| |||||||||||||||||||||||    
T  959733 cgacacctaatcccataagtggtgaaacttcaatcaagtccacacatgcatgtttt 959788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 29338133 - 29338086
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||    
T  29338133 aatggtataagagcatgttgattgttagaacacgttttctcatgtttg 29338086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 32115651 - 32115734
Alignment:
Q  132 atcatcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaaca 214  Q
    |||||||||||||| ||||| ||||||||||||||| | | ||||||||  |||  |||||||||| | |||||||||||||||    
T  32115651 atcatcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctttgtagaaggtcaaca 32115734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 344 - 533
Target Start/End: Original strand, 32115858 - 32116048
Alignment:
Q  344 aagtaatgaaacctcagtcaagtccacacatgcatgtttttcttcta-tcaactagtacatcataacatctgttggcctaagtgttgatcttccatctag 442  Q
    |||| |||||||| | |||||||| ||||||||||||||| || ||| ||| || ||||| ||||||||| |  ||||| ||||||||||||| ||||||    
T  32115858 aagtgatgaaaccccggtcaagtctacacatgcatgttttcctcctactcatct-gtacaccataacatccgcaggcctgagtgttgatcttctatctag 32115956  T
Q  443 ccggtgagacaaaaagttcacaaacgcatcatttttcgcagatactccc-atcgtcagaatatatgaaaaggaacatccttaacaaagtcat 533  Q
      ||| || ||  |||||||||  ||| || || ||| | |||||||||   ||||| ||||||| |||| | |||||| ||||||||||||    
T  32115957 taggtcagtcaggaagttcacatgcgcctctttcttcactgatactcccgcccgtcaaaatatatcaaaaagtacatccctaacaaagtcat 32116048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 34554331 - 34554284
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||    
T  34554331 aatggtataaaaacatcttgattatcagaacacgctttctcatgtttg 34554284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 4165976 - 4165930
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    |||| ||||||| |||||||||||| |||||||||||||||||||||    
T  4165976 aatgatataaaagcatgttgattgtcagaacacgctttctcatgttt 4165930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 45731 - 45670
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||| |||||| |||||||||||| |||||||| ||||||||||||||  |||||| ||||    
T  45731 aatggaataaaagcatgttgattgtcagaacacgttttctcatgtttgatcactttgcttga 45670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 3714975 - 3715032
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgac 290  Q
    |||||||||||||| ||||| |||||||| |||||||||||| || | ||||||||||    
T  3714975 tataaaaacatgttaattgtgagaacacgttttctcatgtttaaccattttgtttgac 3715032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 33220765 - 33220704
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    |||||||||||| |||||||||||| |  ||||||||||||||||||| | |||||| ||||    
T  33220765 aatggtataaaagcatgttgattgtcaacacacgctttctcatgtttggccactttgcttga 33220704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 34415489 - 34415535
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    ||||| |||||| |||||||||||| ||||||| |||||||||||||    
T  34415489 aatggcataaaagcatgttgattgtcagaacacactttctcatgttt 34415535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 7200585 - 7200544
Alignment:
Q  234 ataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||||||||||| |||| || |||||||||||||    
T  7200585 ataaaaacatgttgattgtttgaactcgatttctcatgtttg 7200544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 13398354 - 13398265
Alignment:
Q  134 catcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaacaacttctga 222  Q
    |||||||||||| ||||||||| | |||| || | | | ||||||||  ||  ||||||||||| ||||||||| |||||||||||||||    
T  13398354 catcgtaaacacaacatttatgcatctagaagtcgtgacattgttatgcatcatcttttgaactctatgtagaatgtcaacaacttctga 13398265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 34168921 - 34169018
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagc 325  Q
    |||||||||||| ||||||| ||||   |||| ||||||||||||||| | |||||| |||||||   |||  ||||||| ||||| || ||||||||    
T  34168921 aatggtataaaagcatgttgcttgtccaaacatgctttctcatgtttggccactttgcttgacgcaaattttagggttgcatgtcctacggtaaaagc 34169018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 34644619 - 34644774
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| ||||| | |||| |||||||||||||||||||||| | ||||||||||||||   |||  ||||||||||||| |||||||||||      
T  34644619 aatggtataaaagcatgtaggttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccc 34644718  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
     |  ||||||   || ||||  ||||||| ||||||||||||||||||||||||||    
T  34644719 cgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgtttt 34644774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 533
Target Start/End: Complemental strand, 28041181 - 28040875
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||| | |||||||||||||||| |||  | | ||| | ||| || ||||||| |     
T  28041181 aatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcggattttagagctgcctatcctacggtaaaaggtc 28041082  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
     |   ||||||  || ||||| ||||||| |||||||||| ||||| ||||||||| |  ||| | |   ||||| |||||||||||  ||||| |||||    
T  28041081 cgacacctaatcccacaagtagtgaaaccccagtcaagtctacacaagcatgttttccacctacccatctgtacaccataacatctgcaggcctgagtgt 28040982  T
Q  428 tgatcttccatctagccggtgagacaaaaagttcacaaacgcatcatttttcgcagata--ctcccatcgtcagaatatatgaaaaggaacatccttaac 525  Q
    |||||||| ||||||  ||| || ||  ||||||||| |||| || || ||| | ||||  ||| || ||||  ||||||| |||||| |||||| ||||    
T  28040981 tgatcttctatctagtgggttagtcaggaagttcacagacgcctccttcttcactgatattctcgca-cgtctaaatatatcaaaaggtacatccctaac 28040883  T
Q  526 aaagtcat 533  Q
    ||||||||    
T  28040882 aaagtcat 28040875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 19035500 - 19035564
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| | |||||| |||||||    
T  19035500 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgc 19035564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 20259851 - 20259788
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacg 291  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||| ||||||    
T  20259851 aatggtataaaaacatgttgattgtcagaacacgctttctcatttttaaccactttgcttgacg 20259788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 21473056 - 21473103
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21473056 aatggtataaaaacatgttgattgtcagaacacgctttctcatgtttg 21473103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 386
Target Start/End: Complemental strand, 50161471 - 50161313
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||| ||||||| |||||||||||| |||||||||||||||||||||| | |||||| |||||||   |||  ||||||  ||||| ||||||||||       
T  50161471 aatgatataaaagcatgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttttagggttgtctgtcctaccgtaaaagtct 50161372  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttct 386  Q
      | |||||||| ||  |||  |||||  || || ||||||||||||||||||||||||    
T  50161371 cagcccctaattccacgagtggtgaaatatcggttaagtccacacatgcatgtttttct 50161313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 37200035 - 37200090
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactacttt 283  Q
    |||||||||||||||| ||||||||||| ||| ||||||| ||||||||| |||||    
T  37200035 aatggtataaaaacatattgattgttagcacatgctttcttatgtttgaccacttt 37200090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 45659702 - 45659655
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  45659702 aatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttg 45659655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 2764532 - 2764594
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgac 290  Q
    ||||| |||||| ||||||||||||  ||||||| ||||||||||||||| ||||||| ||||    
T  2764532 aatggcataaaagcatgttgattgtcggaacacgttttctcatgtttgaccactttgtctgac 2764594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 23043930 - 23044034
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| || ||  | |||||||| |||| | |||||| |||| || | |||| |||||| |||||||||||| ||| | |    
T  23043930 aatggtataaaagcatgttgattgtgagtacttgttttctcatatttggccactttgcttgatgcagctttgagggttgtttgtcccaccgttaaatcaa 23044029  T
Q  328 tggtc 332  Q
    |||||    
T  23044030 tggtc 23044034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 31737377 - 31737313
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||| |||| | | ||||||||||||| | |||||| |||||||    
T  31737377 aatggtataaaagcatgttgattgtcagaatatgttttctcatgtttggccactttgcttgacgc 31737313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 50314678 - 50314622
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttg 284  Q
    |||||||||||| |||||||||||| |||||| | ||| ||||||||||| ||||||    
T  50314678 aatggtataaaagcatgttgattgtgagaacaagttttgtcatgtttgaccactttg 50314622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 22346951 - 22347010
Alignment:
Q  231 ggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgac 290  Q
    ||||||||  |||||||||||| ||||||||||||||||| |||| | |||||| |||||    
T  22346951 ggtataaacgcatgttgattgtcagaacacgctttctcatatttggccactttgcttgac 22347010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 29169847 - 29169800
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||| |||||||||||| |||||||| |||||| ||||||    
T  29169847 aatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttg 29169800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 441
Target Start/End: Complemental strand, 37932150 - 37932059
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatcta 441  Q
    |||||||||| |||||||||| |||||||||||| || || || |   ||||||||||||||| |  ||||||||||| ||| ||| |||||    
T  37932150 tgaaacctcaatcaagtccacgcatgcatgttttcctcctgtccatatgtacatcataacatccgcaggcctaagtgtcgattttctatcta 37932059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 42919919 - 42919973
Alignment:
Q  234 ataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |  ||||||||||    
T  42919919 ataaaaacatgttgattgtgagaacacg-tttctcatgtttggccgctttgtttga 42919973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 464
Target Start/End: Complemental strand, 29169726 - 29169612
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtga 449  Q
    ||||||| |||||||||| ||||||||||||||| || ||| | |   ||||| ||||||||| |  ||||| |||||||||||||  |||||| ||| |    
T  29169726 tgaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatccgcaggcctgagtgttgatcttctttctagcgggtca 29169627  T
Q  450 gacaaaaagttcaca 464  Q
    | ||  |||||||||    
T  29169626 gtcaggaagttcaca 29169612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 2898676 - 2898725
Alignment:
Q  172 attgttatttatgctcttttgaactttatgtagaaggtcaacaacttctg 221  Q
    ||||||||  ||| ||||||||||| ||||||||||||||||||| ||||    
T  2898676 attgttatgcatgatcttttgaactctatgtagaaggtcaacaacctctg 2898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 435
Target Start/End: Complemental strand, 4861913 - 4861836
Alignment:
Q  358 cagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttc 435  Q
    ||||||| ||||||||||||||||||||| ||| | |   ||||| |||||||||||| |||  |||||| |||||||    
T  4861913 cagtcaaatccacacatgcatgtttttctcctacccatccgtacaccataacatctgtaggctgaagtgtcgatcttc 4861836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 25375887 - 25375823
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||||||||||||| || |||||| | ||| |||||||||   |||||| |||||||    
T  25375887 aatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgc 25375823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 233 - 442
Target Start/End: Original strand, 4501316 - 4501525
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggtc 332  Q
    ||||||| |||||||||||| |||||||||||||||||||||| | |||||||||||||| | |||  |||||| |||||| || |||||||    |       
T  4501316 tataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttgacgcagcttttagggttgtttgtcctacggtaaaaggcccgaca 4501415  T
Q  333 cctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatc 432  Q
    ||||||  || ||||  ||||||| |||||||||| ||||||||||||||| || ||| | |   ||||| ||||||||| | |||||| |||||| |||    
T  4501416 cctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatccgctggcctgagtgtttatc 4501515  T
Q  433 ttccatctag 442  Q
    ||| ||||||    
T  4501516 ttctatctag 4501525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 228 - 533
Target Start/End: Complemental strand, 28517341 - 28517035
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||||||||||||||||   |||||||||||||||||||| | |||||| ||||||| | |||  ||||||  ||||| || ||||||||      
T  28517341 aatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgcagcttttagggttgtctgtcctactgtaaaagccc 28517242  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
        ||||||   || ||||  ||||||| ||||||||||||||||| |||||||| || | | | |   ||||| |||||||| ||  |||||||||||    
T  28517241 ccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatgttttcctccaacccatccgtacaccataacatttgcaggcctaagtgt 28517142  T
Q  428 tgatcttccatctagccggtgagacaaaaagttcacaaacgcatcatttttcgcagatactccc-atcgtcagaatatatgaaaaggaacatccttaaca 526  Q
     ||||||| ||||||  ||| || || ||||||||||  ||| || || ||| | ||| |||||  ||| | |||||||| |||| | |||||| |||||    
T  28517141 cgatcttctatctagtgggtcagtcagaaagttcacaggcgcctccttcttcaccgatgctcccgctcgcctgaatatatcaaaaagtacatccctaaca 28517042  T
Q  527 aagtcat 533  Q
    |||||||    
T  28517041 aagtcat 28517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 19277346 - 19277410
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  19277346 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggctactttgcttgacgc 19277410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 21326892 - 21326796
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaag 324  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| | |||||| ||||||||| |||  ||| || |||||| || |||||||    
T  21326892 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcggcttttagggctgtttgtcctacggtaaaag 21326796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 32584654 - 32584809
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||| ||||| ||| |||||||| |||||||| ||||||||||||||| ||||||||||| ||  ||||  ||||||| ||||| ||||||||| |      
T  32584654 aatggtgtaaaagcatcttgattgtcagaacacgttttctcatgtttgaccactttgtttgatgcaatttttagggttgcatgtcctaccgtaaaatccc 32584753  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
     |  |||||||  || |||   |||||||  |||||||||||||||||||||||||    
T  32584754 cgacccctaatcccacaagaggtgaaacccgagtcaagtccacacatgcatgtttt 32584809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 983002 - 983066
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||| | |||||| |||||||    
T  983002 aatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgc 983066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 22198039 - 22198103
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||   |||||| |||||||    
T  22198039 aatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 22239782 - 22239718
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||   |||||| |||||||    
T  22239782 aatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgc 22239718  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 30216112 - 30216048
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||||||||||||||||||| | ||||||||||||||| |||||| | |||| |||||||    
T  30216112 aatggtataaaaacatgttgattgtcaaaacacgctttctcatatttgaccattttgcttgacgc 30216048  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 9281181 - 9281138
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  9281181 gtataaaagcatgttgattgttagaacacgctttctcatgtttg 9281138  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 9292152 - 9292109
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  9292152 gtataaaagcatgttgattgttagaacacgctttctcatgtttg 9292109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 350 - 464
Target Start/End: Complemental strand, 45613774 - 45613660
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtga 449  Q
    ||||||| |||||||||| ||||||||||||||| || ||| | | | ||||||||||||||| |  ||||| |||||||||||||  |||||| ||| |    
T  45613774 tgaaaccccagtcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatccgcaggcctgagtgttgatcttctttctagcgggtca 45613675  T
Q  450 gacaaaaagttcaca 464  Q
    | ||  |||||||||    
T  45613674 gtcaggaagttcaca 45613660  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 3676692 - 3676756
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| ||| ||||| || |||||||||||||| ||||||||| |||||| |||||||    
T  3676692 aatggtataaaagcatattgatagtaagaacacgctttctgatgtttgaccactttgcttgacgc 3676756  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 27521528 - 27521588
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||  |||||||||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  27521528 gtataaatgcatgttgattgtcagaacacgttttctcatgtttgaccactttgtttaacgc 27521588  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 442
Target Start/End: Original strand, 43857049 - 43857141
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctag 442  Q
    ||||||| | ||||||||||| |||| |||||||||| ||| | |   ||||| |||||||||||  ||||||||||||||||||| ||||||    
T  43857049 tgaaacccccgtcaagtccacgcatgtatgtttttctcctacccatccgtacaccataacatctgcaggcctaagtgttgatcttctatctag 43857141  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 2904418 - 2904481
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacg 291  Q
    |||| ||||||| ||||||||||||  ||||| ||||||||||||||||||| |||| ||||||    
T  2904418 aatgatataaaatcatgttgattgtcggaacatgctttctcatgtttgactattttgcttgacg 2904481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 442
Target Start/End: Original strand, 5825326 - 5825538
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||||||||||||||||||||| | ||||||| || |||||||||   |||||| |||| || | |||  ||| | | |||||  ||||||||||      
T  5825326 aatggtataaaaacatgttgattgtcataacacgcattgtcatgtttgc--actttgcttgatgcagcttttagggcttcctgtcctgccgtaaaagcct 5825423  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
     |  ||||||   || ||||  ||||||| |||||||||||||||||||||||||| || | | | | | ||||| ||||||||| |  |||||| ||||    
T  5825424 cgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccattcgtacaccataacatccgcaggcctatgtgt 5825523  T
Q  428 tgatcttccatctag 442  Q
     ||||||| ||||||    
T  5825524 cgatcttctatctag 5825538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 24527642 - 24527688
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||    
T  24527642 aatggtataaaagcatgttgattgtcagaacacgttttctcatgttt 24527688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 42295238 - 42295174
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||||||||||||||||||| |||| | ||||||| ||||||| | | |||| |||||||    
T  42295238 aatggtataaaaacatgttgattgtcagaagaagctttcttatgtttggccattttgcttgacgc 42295174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 25186990 - 25186935
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactacttt 283  Q
    ||||||| ||||||||||||||| |  ||||||||||||||||||| ||| |||||    
T  25186990 aatggtagaaaaacatgttgattatcggaacacgctttctcatgttagaccacttt 25186935  T

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Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 27521408 - 27521495
Alignment:
Q  136 tcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaacaacttctga 222  Q
    |||||||||| ||||| || ||| |||||||| | | ||||||||  |||  |||||||||| ||||||||||||||||||| |||||    
T  27521408 tcgtaaacacaacattcatagacttaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacaacctctga 27521495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 43383222 - 43383309
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtccca 315  Q
    ||||| |||||| ||||||||||| | ||||| ||||||||||| ||| | ||||| ||||| | || |||||||| ||| |||||||    
T  43383222 aatggcataaaagcatgttgattgctggaacatgctttctcatggttggccactttatttgaagtggctttgtgggctgcctgtccca 43383309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 45613896 - 45613849
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    ||||||||||||||||||||||||| ||||||| ||||| | ||||||    
T  45613896 aatggtataaaaacatgttgattgtcagaacacactttcccgtgtttg 45613849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 34772834 - 34772896
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgac 290  Q
    |||||||||||||||| || |||||  |||||| ||||||||| |||| |||||||| |||||    
T  34772834 aatggtataaaaacatattaattgtccgaacacactttctcatatttggctactttgattgac 34772896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 38839501 - 38839535
Alignment:
Q  349 atgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    |||||| ||||||||||||||||||||||||||||    
T  38839501 atgaaatctcagtcaagtccacacatgcatgtttt 38839535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 23037596 - 23037661
Alignment:
Q  228 aatggtataaaaacatgttgattgt-tagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||| |||||||||||||||||| | || |||| | |||||||| ||| |||||||||||||||||    
T  23037596 aatgatataaaaacatgttgattatataaaacatgttttctcatatttaactactttgtttgacgc 23037661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 42295358 - 42295273
Alignment:
Q  132 atcatcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaacaac 216  Q
    |||||||||||||| | ||| ||||||||||||||| | | | ||||||  ||| | ||||||||  |||||||||||||||||||    
T  42295358 atcatcgtaaacacaagattcatggacctaggagacatgacaatgttatgcatgatattttgaacgctatgtagaaggtcaacaac 42295273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 1249667 - 1249703
Alignment:
Q  256 aacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  1249667 aacacgctttctcatgtttgaccactttatttgacgc 1249703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 10905282 - 10905322
Alignment:
Q  352 aaacctcagtcaagtccacacatgcatgtttttcttctatc 392  Q
    ||||||||||||||| |||||||||||||||| || |||||    
T  10905282 aaacctcagtcaagttcacacatgcatgttttcctcctatc 10905322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 26770454 - 26770514
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||| ||| | |||||| |||||||| |||||||||||| || ||||| ||||||||    
T  26770454 gtataaaagcatatagattgtcagaacacgttttctcatgttttaccactttatttgacgc 26770514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 40726534 - 40726502
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacac 260  Q
    ||||||||||||||||||||||||| |||||||    
T  40726534 aatggtataaaaacatgttgattgtcagaacac 40726502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 350 - 464
Target Start/End: Complemental strand, 10579711 - 10579597
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtga 449  Q
    ||||||| |||||||||||||| ||||||||||| || ||| | ||| ||||| |||||||| ||||||||||||||| |||||||||||| |  ||| |    
T  10579711 tgaaaccccagtcaagtccacaaatgcatgttttcctcctacccactcgtacaccataacatttgttggcctaagtgtcgatcttccatctggtaggtca 10579612  T
Q  450 gacaaaaagttcaca 464  Q
    ||||| |||||||||    
T  10579611 gacaagaagttcaca 10579597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 228 - 442
Target Start/End: Complemental strand, 4413120 - 4412906
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| | |||||| ||||| | | |||  ||||||| ||||| || ||||||| |     
T  4413120 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacacagcttttagggttgcctgtcctacggtaaaaggtc 4413021  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
    ||   | ||||  || ||||  ||||||| |||||||||| ||||| ||||||||| |  ||| | |   ||||| ||||||||| |  ||||| |||||    
T  4413020 tgacacttaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtacaccataacatccgcaggcctgagtgt 4412921  T
Q  428 tgatcttccatctag 442  Q
    |||||||| ||||||    
T  4412920 tgatcttctatctag 4412906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 464
Target Start/End: Original strand, 27502419 - 27502650
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggt 331  Q
    |||||||| ||||||| ||||  ||||||| ||||||||||||||| |||||| ||||||| | |||  |||||  |||||| | |||||||||| ||      
T  27502419 gtataaaagcatgttgtttgtcggaacacgttttctcatgtttgaccactttgcttgacgcagcttttagggtt-attgtcctatcgtaaaagctctgac 27502517  T
Q  332 ccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgat 431  Q
    ||||||   || ||||  ||||||| || ||| ||||||||||||||||||| || | | | |   ||||| ||||||||| |  ||||||||||| |||    
T  27502518 ccctaaacccacaagtggtgaaaccccattcaggtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgat 27502617  T
Q  432 cttccatctagccggtgagacaaaaagttcaca 464  Q
    ||| |||||||  ||| || || ||||||||||    
T  27502618 cttgcatctagtgggtcagtcagaaagttcaca 27502650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 464
Target Start/End: Original strand, 28225053 - 28225289
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| |||| |||||||||||| ||||   |||||| ||||||| | |||    |||| |||||| |||||||||||      
T  28225053 aatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgcagcttttaaagttgtttgtcctaccgtaaaagccc 28225152  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
    |    |||||   || ||||| ||||||| || ||||||||||||||||||||||| || | | | |   ||||| ||||||||| || |||||||||||    
T  28225153 taactcctaagcccacaagtagtgaaaccccattcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgtaggcctaagtgt 28225252  T
Q  428 tgatcttccatctagccggtgagacaaaaagttcaca 464  Q
     ||| ||| ||||||  ||| || || ||||||||||    
T  28225253 cgatattctatctagtgggtaagtcagaaagttcaca 28225289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 41867962 - 41867898
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||| |||||||    
T  41867962 aatggtataaaagcatgttgattgtcagaacatgctttctcatgtttgaccactttgcttgacgc 41867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 9685469 - 9685314
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||||| | |||||| ||||||||| |||  ||| ||| | ||| || ||||||| |     
T  9685469 aatggtataaaagcatgttgattgtcagaacacgctttttcatgtttggccactttgcttgacgcggattttagggctgcctatcctacggtaaaaggtc 9685370  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    ||   ||||||  || ||||  ||||||| |||||||||| |||||  ||||||||    
T  9685369 tgacacctaatcccacaagtggtgaaaccccagtcaagtctacacaatcatgtttt 9685314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 2888569 - 2888625
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttg 284  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||    
T  2888569 aatggtataaaaacatgttgattgtcagaacacgttttctcatgtttgtccactttg 2888625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 19161837 - 19161773
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||  |||||||    
T  19161837 aatggtataaaaacatgttgattgtcagaacacgctttttcatgtttgcccacttttcttgacgc 19161773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 323
Target Start/End: Original strand, 5532476 - 5532567
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaa 323  Q
    |||||||| |||||||||||| | |||||| ||||||||||||||| |||||| ||||||| | |||  ||| ||| ||||| |||||||||    
T  5532476 gtataaaagcatgttgattgtcacaacacgttttctcatgtttgaccactttgcttgacgcagcttttagggctgcatgtcctaccgtaaaa 5532567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 23484992 - 23484929
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacg 291  Q
    |||||||||||| |||||||||||| |||||| |||||||||| |||| | |||||||||||||    
T  23484992 aatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacg 23484929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 34814873 - 34814810
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacg 291  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||||||  ||||| |||||||    
T  34814873 aatggtataaaagcatattgattgtcagaacacgctttctcatgtttgatcactttatttgacg 34814810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 7760882 - 7760745
Alignment:
Q  246 tgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggtccctaatttcagaa 345  Q
    ||||||||||| |||| ||||||||| ||| | |||||  ||||||||  |||| ||||||||||||||||| ||||||   |||| | ||||  || ||    
T  7760882 tgattgttagatcacgttttctcatgattggccactttacttgacgcgactttgagggttgcttgtcccaccataaaagtcttggttcataatcccacaa 7760783  T
Q  346 gtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    ||  |||||||  |||||||| |||||||| |||||||    
T  7760782 gtggtgaaaccctagtcaagttcacacatgtatgtttt 7760745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 17344575 - 17344654
Alignment:
Q  136 tcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaaca 214  Q
    |||||||||| ||||| ||||||||||||||| | | ||||||||  |||  |||||||||| |||||||||||||||||    
T  17344575 tcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaaca 17344654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 3825902 - 3825938
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttct 386  Q
    |||||||||| ||||||||||||||||||||||||||    
T  3825902 tgaaacctcaatcaagtccacacatgcatgtttttct 3825938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 13413291 - 13413367
Alignment:
Q  139 taaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaaca 214  Q
    ||||||| ||||| ||||||||||||||| | | ||||||||  |||  |||||||||| |||||||||||||||||    
T  13413291 taaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaaca 13413367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 41868087 - 41867999
Alignment:
Q  127 aaccgatcatcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaaca 214  Q
    |||| ||| |||||||||| ||||| |||||||| |||||| | | ||||||||  |||  |||||||||| |||||||||||||||||    
T  41868087 aaccaatcctcgtaaacacaacattcatggacctgggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaaca 41867999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 13147133 - 13147086
Alignment:
Q  246 tgattgttagaacacgctttctcatgtttgactactttgtttgacgcg 293  Q
    ||||||| |||||||||||||||||||||||| |||||  ||||||||    
T  13147133 tgattgtcagaacacgctttctcatgtttgaccacttttcttgacgcg 13147086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 18745008 - 18744961
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    ||||||||||||  ||||||||||| ||||||||||||||| ||||||    
T  18745008 aatggtataaaagtatgttgattgtcagaacacgctttctcgtgtttg 18744961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 29808128 - 29808174
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||||    
T  29808128 aatggtataaaa-catgttgattgttataacacgctgtctcatgtttg 29808174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 464
Target Start/End: Original strand, 17344813 - 17344927
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtga 449  Q
    ||||||| |||||||||| ||||||||||||||| || ||| | |   ||||| ||||||||| |   |||| |||||||||||||  |||||| ||| |    
T  17344813 tgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatccgcatgcctgagtgttgatcttctttctagcgggtca 17344912  T
Q  450 gacaaaaagttcaca 464  Q
    | || ||||||||||    
T  17344913 gtcagaaagttcaca 17344927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 1296101 - 1296040
Alignment:
Q  231 ggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||||||| ||||| ||||||   ||||||||||||| | | ||||||||||||    
T  1296101 ggtataaaaacatgtttattgtcagaacatattttctcatgtttggccattttgtttgacgc 1296040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 16351890 - 16351833
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgac 290  Q
    |||||||  ||||||||||| |||||||  ||||||||||||||| |||||| |||||    
T  16351890 tataaaattatgttgattgtgagaacacattttctcatgtttgaccactttgcttgac 16351833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 44686594 - 44686627
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    ||||||| ||||||||||||||||||||||||||    
T  44686594 tgaaaccccagtcaagtccacacatgcatgtttt 44686627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 44720379 - 44720423
Alignment:
Q  231 ggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||||||||||||| | |||||| ||| |||||||||    
T  44720379 ggtataaaaacatgttgattgtcataacacgttttttcatgtttg 44720423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 228 - 442
Target Start/End: Original strand, 49018016 - 49018230
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||| |||    |||  ||||||||||||| ||||||||||       
T  49018016 aatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttcagggttgcttgtcctaccgtaaaaggct 49018115  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
     |   ||||||| || ||||  ||||||  |||||||||  ||||||||||||||| ||  || |||   ||||| |||||||||||   |||| |||||    
T  49018116 cgacacctaattccacaagtggtgaaactccagtcaagtttacacatgcatgttttcctcgtaccaatccgtacaccataacatctgcatgcctgagtgt 49018215  T
Q  428 tgatcttccatctag 442  Q
    | |||||| ||||||    
T  49018216 taatcttctatctag 49018230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 13582562 - 13582717
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||||||||||| ||||||||| ||||||| |||||| ||||||||  |||||| ||||||| | |||  ||| ||||||||| || |||||||       
T  13582562 aatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggtaaaaggcc 13582661  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    ||   ||||||  || ||||  ||||||||| |||||||| |||||||||||||||    
T  13582662 tgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgtttt 13582717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 37133053 - 37132990
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacg 291  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||| ||||||    
T  37133053 aatggtataaaaacatgttgattgtcagaacacgctttctcatgtttaaccactttgcttgacg 37132990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 7502066 - 7502010
Alignment:
Q  228 aatggtataaaaa-catgttgattgttagaacacgctttctcatgtttgactacttt 283  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  7502066 aatggtataaaaaacatgttgattgttcgaacacgctttctcatgtttgaccacttt 7502010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 39583283 - 39583219
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||| ||||||| |||||||||||| |||||||||||||||||||||| | |||||| |||||||    
T  39583283 aatgatataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgc 39583219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 44198820 - 44198884
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||| | |||||| |||||||    
T  44198820 aatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgc 44198884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 7900911 - 7901066
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||| | ||| |||| ||||||| |||||  ||| |    |||| ||||||||||       
T  7900911 aatggtataaaagcatgttgattgtcagaaaacgctttctcatgttcggctattttgcttgacgcagtttttagggatatccgtcctaccgtaaaagacc 7901010  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
        |||||||  || ||||  ||||||| ||||||||||||||||||||||||||    
T  7901011 caacccctaatcccacaagtggtgaaaccccagtcaagtccacacatgcatgtttt 7901066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 52741566 - 52741519
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  52741566 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttg 52741519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 38670930 - 38670885
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgac 277  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  38670930 gtataaaagcatgttgattgtcagaacacgctttctcatgtttgac 38670885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 232 - 462
Target Start/End: Original strand, 43123202 - 43123431
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgttt-gactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatgg 330  Q
    |||||| |||||||||||||| ||||||  |||| |||||||| ||| |||||| |||| |||  ||||  |||||| |||||||||||||| ||| |      
T  43123202 gtataacaacatgttgattgtcagaacatcctttatcatgtttagac-actttgcttgatgcgactttgatggttgcatgtcccaccgtaaa-gctctaa 43123299  T
Q  331 tccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttga 430  Q
    |||  |||  || |||   ||||||| || | |||||||||||||  ||||||| ||||  | ||  ||||| |||||||| ||||||||||||||| |     
T  43123300 tcctcaatcccacaagaggtgaaaccccaattaagtccacacatgtttgtttttgttctgcccacccgtacaccataacatttgttggcctaagtgtcgg 43123399  T
Q  431 tcttccatctagccggtgagacaaaaagttca 462  Q
    |||||||||| |  ||| |||||| |||||||    
T  43123400 tcttccatcttgtgggtcagacaagaagttca 43123431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 53785762 - 53785809
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  53785762 aatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttg 53785809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 26772811 - 26772873
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgac 290  Q
    |||||||||||| |||||||||||| |||||||| ||||| ||||||| | |||||| |||||    
T  26772811 aatggtataaaagcatgttgattgtcagaacacgttttctgatgtttggccactttgcttgac 26772873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 3443366 - 3443302
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| ||||||||||||||||| || |||| ||||||||| | | |||| |||||||    
T  3443366 aatggtataaaagcatgttgattgttagaatacactttttcatgtttggccattttgcttgacgc 3443302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 464
Target Start/End: Original strand, 29861974 - 29862086
Alignment:
Q  352 aaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtgaga 451  Q
    ||||| ||||||||| |||||||||||||||| || ||| | |   ||||| |||||||||||   |||||||||| ||||||| ||||||  ||  |||    
T  29861974 aaaccccagtcaagttcacacatgcatgttttcctcctacccatccgtacaccataacatctgcatgcctaagtgtcgatcttctatctagtgggccaga 29862073  T
Q  452 caaaaagttcaca 464  Q
    ||| |||||||||    
T  29862074 caagaagttcaca 29862086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 384
Target Start/End: Complemental strand, 46940824 - 46940668
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| ||||||||||||  ||||| | ||||| ||||||| | |||||| |||||||   |||  | ||||  ||||| ||| ||||| |      
T  46940824 aatggtataaaagcatgttgattgtcggaacatgttttctaatgtttggccactttgcttgacgcatcttttagagttgtctgtcctaccataaaatcct 46940725  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgttttt 384  Q
     |  |||||||  ||  |||||||||||||||||||||| ||||||| |||||||||    
T  46940724 cgacccctaatcccacgagtaatgaaacctcagtcaagttcacacatacatgttttt 46940668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 32546848 - 32546895
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    ||||||||||||  |||||||||||  |||||||||||||||||||||    
T  32546848 aatggtataaaagtatgttgattgtccgaacacgctttctcatgtttg 32546895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 4473118 - 4473160
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||    
T  4473118 gtataaaaacatattgatggttagaacacgctttttcatgttt 4473160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 37992385 - 37992447
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgac 290  Q
    |||| ||||||| |||||||||||| |||||| |||| ||||||||||   ||||||||||||    
T  37992385 aatgatataaaatcatgttgattgtcagaacatgcttcctcatgtttggtcactttgtttgac 37992447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 2601800 - 2601829
Alignment:
Q  191 tgaactttatgtagaaggtcaacaacttct 220  Q
    ||||||||||||||||||||||||||||||    
T  2601800 tgaactttatgtagaaggtcaacaacttct 2601829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 38146109 - 38146170
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||||||||||||||||||||||| | |||||| | ||||  ||||||| |||||| ||||    
T  38146109 aatggtataaaaacatgttgattgtcaaaacacgttgtctcgcgtttgaccactttgattga 38146170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 13582447 - 13582527
Alignment:
Q  136 tcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaacaa 215  Q
    |||||||||| ||||| |||| |||||||||| | | ||||||||  |||  |||||||||| | ||||||||||||||||    
T  13582447 tcgtaaacacaacattcatggtcctaggagacatgacattgttatgcatgaccttttgaactctctgtagaaggtcaacaa 13582527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 26856815 - 26856767
Alignment:
Q  229 atggtataaaaacatgttgattgttagaacacgctttctcatgtttgac 277  Q
    ||||||||||| |||||||||||| | |||||||||| |||| ||||||    
T  26856815 atggtataaaagcatgttgattgtcacaacacgctttatcatatttgac 26856767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 35236381 - 35236413
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgttt 382  Q
    |||||||||| ||||||||||||||||||||||    
T  35236381 tgaaacctcaatcaagtccacacatgcatgttt 35236413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 468
Target Start/End: Complemental strand, 52411832 - 52411716
Alignment:
Q  352 aaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtgaga 451  Q
    ||||||||||| |||||||| ||| | ||||| || || || | | | |||||||||||||||  |||||||| ||  |||||| ||||||  ||| ||     
T  52411832 aaacctcagtcgagtccacatatgtaagttttcctcctgtccattcggacatcataacatctgcaggcctaagcgtcaatcttctatctagtgggtcagt 52411733  T
Q  452 caaaaagttcacaaacg 468  Q
     ||||||||||||||||    
T  52411732 taaaaagttcacaaacg 52411716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 24125081 - 24125236
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||| | | |||| |||| || | |||  ||| ||||||||||||||||||||  |    
T  24125081 aatggtataaaagcatgttgattgtcagagcacgctttctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggca 24125180  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
     |   | ||||  || ||||  ||||||| |||||||||| |||||||||||||||    
T  24125181 cgacgcataatcccacaagtggtgaaaccccagtcaagtctacacatgcatgtttt 24125236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 38815347 - 38815407
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttg 288  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| | ||||||||||    
T  38815347 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttg 38815407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 39434720 - 39434784
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| | |||||| |||||||    
T  39434720 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgc 39434784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 442
Target Start/End: Original strand, 500280 - 500494
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||| | |||||| |||||||   |||  ||| ||   |||| ||||||||||       
T  500280 aatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctgtcggtcctaccgtaaaaggcc 500379  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
     |   ||||||  || ||||  |||||||||| ||||||| ||||||||||||||| |||||| | |    |||| ||||||||| |  ||||| |||||    
T  500380 cgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttccttctacccatccatacaacataacatccgcaggcctgagtgt 500479  T
Q  428 tgatcttccatctag 442  Q
    |||||||| ||||||    
T  500480 tgatcttctatctag 500494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 6592628 - 6592692
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||| ||||| |||||||||||| |||||||||||||||||||||| | |||||| |||||||    
T  6592628 aatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttggccactttgcttgacgc 6592692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 6618337 - 6618401
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||||| |||||| | ||||||||    
T  6618337 aatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttaactactctatttgacgc 6618401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 464
Target Start/End: Complemental strand, 25021868 - 25021632
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| ||| || |||||| ||||| |   |||  ||| ||  ||||  || |||||| |      
T  25021868 aatggtataaaaacatgttgattgtgagaacacactttctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactgtaaaaacat 25021769  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
     |  |||||||  || ||||  ||||||  | |||||||||||||||||||||||| || ||| | |   ||||| |||||||||||  ||||||||||     
T  25021768 cgacccctaatcccacaagtggtgaaactccggtcaagtccacacatgcatgttttcctcctacccatccgtacaccataacatctgcaggcctaagtga 25021669  T
Q  428 tgatcttccatctagccggtgagacaaaaagttcaca 464  Q
     ||||||| ||||||  ||| |||||| |||||||||    
T  25021668 cgatcttctatctagtgggtcagacaagaagttcaca 25021632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 10189596 - 10189651
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactacttt 283  Q
    |||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  10189596 aatgatataaaaacatgttgattgtcagaacatgctttctcttgtttgactacttt 10189651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 8540425 - 8540367
Alignment:
Q  234 ataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| ||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  8540425 ataaaaacatgtcgattgttagaacacattttctaatgtttgactattttgtttgacgc 8540367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 435
Target Start/End: Complemental strand, 35739919 - 35739834
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttc 435  Q
    ||||||| |||||||||||||||||||||||||| || ||| | | |  |||| |||||||||||   ||||||||||||||||||    
T  35739919 tgaaaccccagtcaagtccacacatgcatgttttcctcctacccattcatacaccataacatctgcatgcctaagtgttgatcttc 35739834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 35740041 - 35739984
Alignment:
Q  227 taatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttg 284  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||||||| | ||||||    
T  35740041 taattgtataaaaacatgttgattgtcagaacccgctttctcatgtttggccactttg 35739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 8882380 - 8882444
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||| ||||| ||| |||||||| |||||||||||||||||||||| | |||||| |||||||    
T  8882380 aatggtttaaaagcatattgattgtcagaacacgctttctcatgtttggccactttgcttgacgc 8882444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 3188022 - 3188068
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    |||||||||||| |||||||||||| ||||||||||| |||||||||    
T  3188022 aatggtataaaagcatgttgattgtcagaacacgcttcctcatgttt 3188068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 4073592 - 4073697
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggt 331  Q
    |||||||| ||||||||||| || |||||| |||||| |||||||| ||||||||||| ||   |||  ||||||  ||| ||||||||||||| ||||     
T  4073592 gtataaaatcatgttgattggtaaaacacgttttctcttgtttgaccactttgtttgatgcaacttttagggttgtctgttccaccgtaaaagc-atgga 4073690  T
Q  332 ccctaat 338  Q
    |||||||    
T  4073691 ccctaat 4073697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 10556342 - 10556277
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggtttt 298  Q
    |||||||||||||||||| | |||| | | ||||||||||||||| ||||| ||||| ||||||||    
T  10556342 tataaaaacatgttgattttcagaatatgttttctcatgtttgaccactttctttgatgcggtttt 10556277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 166216 - 166300
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccac 316  Q
    |||| |||| |||||  |||| |||||||||||||||||| |||   ||||||||||| |||| ||||| ||  |||||||||||    
T  166216 gtatgaaaatatgtttgttgtcagaacacgctttctcatgattggacactttgtttgaagcggctttgttggccgcttgtcccac 166300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 4686944 - 4686908
Alignment:
Q  351 gaaacctcagtcaagtccacacatgcatgtttttctt 387  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  4686944 gaaacctcagtcaaatccacacatgcatgtttctctt 4686908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 235 - 533
Target Start/End: Complemental strand, 50000972 - 50000673
Alignment:
Q  235 taaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggtccc 334  Q
    ||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||| | |||  | | ||  ||||| |||||||||||      |||    
T  50000972 taaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttgcttgacgcagcttttagagctgtctgtcctaccgtaaaagcccccacccc 50000873  T
Q  335 taatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatctt 434  Q
    | |   || ||||  ||||||| |||||||||||||||||||||||||| || | | | |   ||||| ||||||||| |  ||||||||||| ||||||    
T  50000872 ttaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatctt 50000773  T
Q  435 ccatctagccggtgagacaaaaagttcacaaacgcatcatttttcgcagatactcc-catcgtcagaatatatgaaaaggaacatccttaacaaagtcat 533  Q
    | ||||||  ||| || || ||||||||||  ||| || || |||   ||||||||   ||| | |||||||| |||| | |||||||||||||||||||    
T  50000772 ctatctagtgggtcagtcagaaagttcacaggcgcctccttcttcattgatactcctgctcgcctgaatatatcaaaaagtacatccttaacaaagtcat 50000673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 53619639 - 53619794
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||| | |||||| ||||||| | |||  ||||||| ||||| || ||||||||      
T  53619639 aatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcagcttttagggttgcctgtcctactgtaaaagccc 53619738  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
        | ||||   || ||||  ||||||| ||||||||||||||||||||||||||    
T  53619739 ccacctctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgtttt 53619794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 442
Target Start/End: Complemental strand, 30940793 - 30940579
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||| |||||  |||||||   |||  ||||||  ||||| |  ||||||| |     
T  30940793 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaacttttagggttgtctgtcctatggtaaaaggtt 30940694  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
    ||   | ||||  || ||||   ||||||||||||||||| ||||| ||||||||| |  ||| | | | ||||| ||||||||  || ||||| |||||    
T  30940693 tgacacttaatcccacaagtggcgaaacctcagtcaagtctacacaagcatgttttccacctacccattcgtacaccataacattcgtaggccttagtgt 30940594  T
Q  428 tgatcttccatctag 442  Q
    |||||||| ||||||    
T  30940593 tgatcttctatctag 30940579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 12053466 - 12053530
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||| ||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  12053466 aatgatataaaaacgttttgattgttagaacacgatttctcatgtttgacaactttgtttgacgc 12053530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 55933516 - 55933452
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||| | ||||||||||||||    
T  55933516 aatggtataaaagcatgttgattgttagaacaaactttctcatgtttggccactttgtttgacgc 55933452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 56462160 - 56462097
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||    
T  56462160 aatggtataaaaacatgttgattgtcagaacacgctttatcatgtttg-ccactttgtttgacgc 56462097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 383
Target Start/End: Original strand, 26521546 - 26521696
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatggtc 332  Q
    ||||||| |||||||||||| | |||||| ||| ||||||||  | ||||||||||||||   |||  |||||| |||||| ||| |||||| | ||  |    
T  26521546 tataaaagcatgttgattgtcataacacgttttttcatgtttagccactttgtttgacgcaacttttagggttgtttgtcctaccataaaaggtctgacc 26521645  T
Q  333 cctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    ||||||  || |||| |||||||  |||||||||||| |||||||||||||    
T  26521646 cctaatcccacaagtgatgaaactccagtcaagtccatacatgcatgtttt 26521696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 350 - 533
Target Start/End: Original strand, 3330125 - 3330309
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtga 449  Q
    ||||||| |||||||||||||||||||| ||||| || | ||| |   ||||| |||||||||||   |||||||||||||||||| ||||||  ||| |    
T  3330125 tgaaaccccagtcaagtccacacatgcacgttttcctccaatccatccgtacaccataacatctgcatgcctaagtgttgatcttctatctagtgggtca 3330224  T
Q  450 gacaaaaagttcacaaacgcatcatttttcgcagatactccc-atcgtcagaatatatgaaaaggaacatccttaacaaagtcat 533  Q
    | || ||||||||||   || || || ||| | |||||||||  ||| | |||||||| |||| | |||||| ||||||||||||    
T  3330225 gtcagaaagttcacaggtgcctccttcttcactgatactcccgctcgcctgaatatatcaaaaagtacatccctaacaaagtcat 3330309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 23255757 - 23255821
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||||| | |||||| |||||||    
T  23255757 aatggtataaaagcatgttaattgtcagaacacgctttctcatgtttggccactttgcttgacgc 23255821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 464
Target Start/End: Original strand, 31847140 - 31847376
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagcta 327  Q
    ||||||| ||||||||||||| ||| |||||| | ||||||||||||||| |||||| ||||||| | |||  ||| ||| ||||| || ||||||||      
T  31847140 aatggtaaaaaaacatgttgactgtcagaacatggtttctcatgtttgaccactttgcttgacgcagcttttagggctgcctgtcctactgtaaaagccc 31847239  T
Q  328 tggtccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgt 427  Q
        ||||||   || ||||  |||||||  ||||||||||||||||||||||||| || | ||| |   ||||| ||||| |||||  |||||||||||    
T  31847240 ccacccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatgttttcctccaatccatctgtacaccataatatctgcaggcctaagtgt 31847339  T
Q  428 tgatcttccatctagccggtgagacaaaaagttcaca 464  Q
      |||||  ||||||  ||| || || ||||||||||    
T  31847340 caatcttttatctagtgggtcagtcagaaagttcaca 31847376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 386
Target Start/End: Original strand, 25504351 - 25504504
Alignment:
Q  231 ggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagctatgg 330  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| | |||| |||| ||   |||  ||||||| ||||  ||||||||||   ||     
T  25504351 ggtataaaaacatgtcgattgttagaacacgttttctcatgtttgacca-tttgcttgatgcaacttt-agggttgcctgtcataccgtaaaaggcctga 25504448  T
Q  331 tccctaatttcagaagtaatgaaacctcagtcaagtccacacatgcatgtttttct 386  Q
      ||||||  || ||||  |||||||||||||||||| | ||||||||||||||||    
T  25504449 cgcctaatcccacaagtggtgaaacctcagtcaagtctatacatgcatgtttttct 25504504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 12918411 - 12918329
Alignment:
Q  243 tgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagc 325  Q
    |||||||||| |||||||| ||||| ||||||||| ||||||||||||||   |||  |||||| |||||| |||||||||||    
T  12918411 tgttgattgtcagaacacgatttcttatgtttgaccactttgtttgacgcaacttttagggttgtttgtcctaccgtaaaagc 12918329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 41440132 - 41440075
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||||||||| ||||| |||||||||||  ||||| |||||||||||||||||||||    
T  41440132 gtataaaaacacgttgaatgttagaacacattttcttatgtttgactactttgtttga 41440075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 4419191 - 4419287
Alignment:
Q  127 aaccgatcatcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaacaacttctga 222  Q
    |||| |||||||||||||| ||||| ||||||||||||||| | | ||||||||  ||   | |||||||| ||||||||||||||||||| |||||    
T  4419191 aaccaatcatcgtaaacacaacattcatggacctaggagacataacattgttatgcataaccctttgaactctatgtagaaggtcaacaacctctga 4419287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 600746 - 600699
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttg 275  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||    
T  600746 aatggtataaaagcatgttaattgttagaacacgttttctcatgtttg 600699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 46440943 - 46440880
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacg 291  Q
    |||| ||||||||| |||| ||||||||||||| |||| | ||||||||| |||||||||||||    
T  46440943 aatgatataaaaacgtgttaattgttagaacacacttttttatgtttgaccactttgtttgacg 46440880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 132438 - 132484
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||    
T  132438 aatggtataaaagcatgttgattgtcagaacacgatttctcatgttt 132484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 442
Target Start/End: Original strand, 18534585 - 18534667
Alignment:
Q  360 gtcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctag 442  Q
    |||||||||||||||||||||||| |||||| | |   ||| | |||||||| ||| ||||||||||| ||||||| ||||||    
T  18534585 gtcaagtccacacatgcatgttttccttctacccatccgtataccataacatttgtaggcctaagtgtcgatcttcaatctag 18534667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 56462276 - 56462190
Alignment:
Q  136 tcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaacaacttctg 221  Q
    |||||||||| |||||||||||| |||||||| | | ||||| ||  ||| || |||||||| ||||||||||||||||||| ||||    
T  56462276 tcgtaaacacaacatttatggacttaggagacatgacattgtcatgcatgatcctttgaactctatgtagaaggtcaacaacctctg 56462190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 56462039 - 56462006
Alignment:
Q  350 tgaaacctcagtcaagtccacacatgcatgtttt 383  Q
    ||||||||||||||||||||||||||||||||||    
T  56462039 tgaaacctcagtcaagtccacacatgcatgtttt 56462006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 28883205 - 28883157
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttga 276  Q
    |||| ||||||||||||||| ||||| ||||||| ||||||||||||||    
T  28883205 aatgatataaaaacatgttggttgttcgaacacgttttctcatgtttga 28883157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 464
Target Start/End: Original strand, 25706695 - 25706798
Alignment:
Q  361 tcaagtccacacatgcatgtttttcttctatcaactagtacatcataacatctgttggcctaagtgttgatcttccatctagccggtgagacaaaaagtt 460  Q
    |||||||||||||||||||||||||| ||| | |   ||||| ||||||||  || ||| ||||||| ||||||| ||||||  ||| || || ||||||    
T  25706695 tcaagtccacacatgcatgtttttctcctacccatctgtacaccataacatacgtaggcttaagtgtcgatcttctatctagtgggtcagtcagaaagtt 25706794  T
Q  461 caca 464  Q
    ||||    
T  25706795 caca 25706798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 45386115 - 45386060
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactacttt 283  Q
    ||||||||||||| |  |||||||| |||||||||||||| ||||||||| |||||    
T  45386115 aatggtataaaaagaaattgattgtcagaacacgctttcttatgtttgaccacttt 45386060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 46391433 - 46391403
Alignment:
Q  186 tcttttgaactttatgtagaaggtcaacaac 216  Q
    |||||||||||||||||||||||||||||||    
T  46391433 tcttttgaactttatgtagaaggtcaacaac 46391403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 53170573 - 53170615
Alignment:
Q  241 catgttgattgttagaacacgctttctcatgtttgactacttt 283  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
T  53170573 catgttgactgtcagaacacgctttctcatgtttggctacttt 53170615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 55933634 - 55933549
Alignment:
Q  132 atcatcgtaaacactacatttatggacctaggagacctta-attgttatttatgctcttttgaactttatgtagaaggtcaacaac 216  Q
    |||||||||||||| ||||| | ||||||||||||| | | |||||||| |||   | |||| ||| |||||||||||||||||||    
T  55933634 atcatcgtaaacacaacattcacggacctaggagacataatattgttatgtataaccctttggactctatgtagaaggtcaacaac 55933549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 45760883 - 45760839
Alignment:
Q  233 tataaaaacatgttgattgttagaacacgctttctcatgtttgac 277  Q
    |||||||| ||||||||||| | ||||||||||||||| ||||||    
T  45760883 tataaaaatatgttgattgtcaaaacacgctttctcatctttgac 45760839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 33303 - 33349
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgttt 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33303 aatggtataaaaacatgttgattgtcagaacacgctttctcatgttt 33349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 7655 - 7719
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||||| |||||| | ||||||||    
T  7655 aatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttaactactctatttgacgc 7719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 325
Target Start/End: Complemental strand, 8570 - 8473
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaagc 325  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||  || |  |||||||| || | ||||  ||||||||||||||| || |||||    
T  8570 aatggtataaaaacatgttgattgtcagaacatgttttctcatgttcaaccaaattgtttgaagcagctttgaaggttgcttgtcccacagtgaaagc 8473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 6387 - 6451
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||| || |||||||||||| |||||||||||||||||||||| | |||||  |||||||    
T  6387 aatggtatagaagcatgttgattgtcagaacacgctttctcatgtttggccactttacttgacgc 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 49464 - 49525
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    |||||||||||| || ||||||||| |||||||| |||||||  |||||| |||||||||||    
T  49464 aatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttga 49525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 16191 - 16251
Alignment:
Q  232 gtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgc 292  Q
    ||||||||||||||| ||||| |||||| | ||||||||||||| | | ||||||||||||    
T  16191 gtataaaaacatgtttattgtcagaacatgttttctcatgtttggccattttgtttgacgc 16251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 18412 - 18358
Alignment:
Q  234 ataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |  ||||||||||    
T  18412 ataaaaacatgttgattgtgagaacacg-tttctcatgtttggccgctttgtttga 18358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 37391 - 37444
Alignment:
Q  236 aaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttga 289  Q
    ||||||||||||||||| |||| | ||||||||||||||||  | |||||||||    
T  37391 aaaaacatgttgattgtcagaatatgctttctcatgtttgatcattttgtttga 37444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 238 - 142
Alignment:
Q  228 aatggtataaaaacatgttgattgttagaacacgctttctcatgtttgactactttgtttgacgcggttttgtgggttgcttgtcccaccgtaaaag 324  Q
    |||||||||||| ||||||||| || | ||| | || ||||||||||| | |||||| ||||||| |||||  ||| ||| ||||| || |||||||    
T  238 aatggtataaaagcatgttgatggtcataacccactgtctcatgtttggccactttgcttgacgcagtttttagggctgcctgtcctacagtaaaag 142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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