View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6718_low_6 (Length: 448)
Name: NF6718_low_6
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6718_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 35 - 426
Target Start/End: Original strand, 39185669 - 39186062
Alignment:
| Q |
35 |
aaacattttaatttccaatgcactcatgacataaatttttaaaataaagttattatttaaacgtcttaaaaagtatcccggagacattcgttaacatttt |
134 |
Q |
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|||||||| |||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| | || | ||||||||||||| |
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| T |
39185669 |
aaacatttcaatttccaatgcgctaatgacataaatttttaaaataaaattactatttaaacgtcttaaaaagtaccccag-gatactcgttaacatttt |
39185767 |
T |
|
| Q |
135 |
ccttattgttattagggtcttgttaacgagtacccatggggcacagtaaacattccaaaataaatttctttatatagttgagaattttggttttcataaa |
234 |
Q |
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| T |
39185768 |
ctttattgttattagggtcttgttaacgagtactcatggagcaccctaaacattccaaaataaatttcggtgtatagttgagattttttgttttcataaa |
39185867 |
T |
|
| Q |
235 |
atttgatgctacaaggttctctctatcttggagtcaagtgaaaatgagaagaagagaatgctagggattatgcatgtggccttagaaattatatattttg |
334 |
Q |
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| T |
39185868 |
atttgatgctacaagattctcactatcttggagtcatgtgaaaatgagaacaagagaatgctagagattatgcatgtggccttagaaattatatattttg |
39185967 |
T |
|
| Q |
335 |
gatggtatcattcgggggaggcgtgtaaatatatgtaatataaaagatatttatc---tattattattgttattaggatcttgttaatgagtatt |
426 |
Q |
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| T |
39185968 |
gatggtatcattcgggggaggcgtgtaaatatatgtaatataaaagatatttatctattattattattattattaggatcttattaacgagtatt |
39186062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 248 - 403
Target Start/End: Original strand, 39185433 - 39185587
Alignment:
| Q |
248 |
aggttctctctatcttggagtcaagtgaaaatgagaagaagagaatgctagggattatgcatgtggccttagaaattatatattttggatggtatcattc |
347 |
Q |
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| T |
39185433 |
aggttctctctatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattataccttttggatggtacca-tc |
39185531 |
T |
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| Q |
348 |
gggggaggcgtgtaaatatatgtaatataaaagatatttatctattattattgtta |
403 |
Q |
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| T |
39185532 |
gggggaggcgtatgaatatgtgtgatataaaagatatctatctattattattgtta |
39185587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 39186078 - 39186128
Alignment:
| Q |
181 |
taaacattccaaaataaatttctttatatagttgagaattttggttttcat |
231 |
Q |
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| T |
39186078 |
taaacattccaaaataaatttcggtgtatagttgagatttttggttttcat |
39186128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 7465522 - 7465615
Alignment:
| Q |
39 |
attttaatttccaatgcactcatgacataaatttttaaaataaagttattatttaaacgtcttaaaaagtatcccggagacattcgttaacattt |
133 |
Q |
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| T |
7465522 |
atttcaatttccgatgcattgattacataaattttcaaaa-agagttatcatataaaggtcttaaagagtgtcccggagacactcgttaacattt |
7465615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 12329370 - 12329448
Alignment:
| Q |
70 |
tttttaaaataaagttattatttaaacgtcttaaaaagtatcccggagacattcgttaacattttccttattgttatta |
148 |
Q |
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| T |
12329370 |
ttttttaaataaagttactttttaagggtcttaaatagtgccccggtggcactcgttaacattttccttattattatta |
12329448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 23605668 - 23605634
Alignment:
| Q |
99 |
cttaaaaagtatcccggagacattcgttaacattt |
133 |
Q |
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| T |
23605668 |
cttaaaaagtatcccggagacactcgttaacattt |
23605634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 7271825 - 7271918
Alignment:
| Q |
39 |
attttaatttccaatgcactcatgacataaatttttaaaataaagttattatttaaacgtcttaaaaagtatcccggagacattcgttaacattt |
133 |
Q |
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| T |
7271825 |
atttttatttccaatgcattgattacatatattttcataa-aaagttatcatttaaaagtcttatagagtgtcccggcgacactcgttaacattt |
7271918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 29525087 - 29525014
Alignment:
| Q |
63 |
acataaatttttaaaataaagttattatttaaacgtcttaaaaagtatcccggagacattcgttaacattttcc |
136 |
Q |
| |
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| T |
29525087 |
acatatattttttaaaaaaaattataatttaaaggtcttaaaaaatactccggaaacattccttaacattttcc |
29525014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 2351424 - 2351484
Alignment:
| Q |
35 |
aaacattttaatttccaatgcactcatgacataaatttttaaaataaagttattatttaaa |
95 |
Q |
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| T |
2351424 |
aaacattttaatttccgatgcattgattacataaacttttaaaataaatatatcatttaaa |
2351484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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