View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6718_low_9 (Length: 331)

Name: NF6718_low_9
Description: NF6718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6718_low_9
NF6718_low_9
[»] chr6 (3 HSPs)
chr6 (4-312)||(27095929-27096237)
chr6 (72-115)||(2165527-2165570)
chr6 (72-115)||(2177160-2177203)
[»] chr3 (4 HSPs)
chr3 (24-126)||(32577466-32577568)
chr3 (14-121)||(33338204-33338311)
chr3 (15-126)||(48950545-48950657)
chr3 (79-118)||(28229438-28229477)
[»] chr2 (5 HSPs)
chr2 (25-121)||(41072982-41073079)
chr2 (23-126)||(373192-373296)
chr2 (15-118)||(17286620-17286723)
chr2 (34-67)||(374536-374569)
chr2 (34-121)||(28716572-28716656)
[»] chr8 (4 HSPs)
chr8 (24-108)||(13035090-13035174)
chr8 (19-121)||(15901389-15901493)
chr8 (19-67)||(29916322-29916370)
chr8 (35-67)||(33709154-33709186)
[»] chr5 (5 HSPs)
chr5 (24-121)||(43222070-43222168)
chr5 (34-121)||(14733510-14733597)
chr5 (36-126)||(35650274-35650365)
chr5 (31-126)||(2582385-2582481)
chr5 (75-126)||(9465739-9465790)
[»] chr7 (5 HSPs)
chr7 (24-117)||(18118537-18118631)
chr7 (76-117)||(676059-676100)
chr7 (24-114)||(30760293-30760384)
chr7 (24-121)||(20399996-20400094)
chr7 (79-121)||(26826072-26826114)
[»] chr1 (8 HSPs)
chr1 (15-97)||(42720586-42720668)
chr1 (76-121)||(24413315-24413360)
chr1 (24-93)||(22536737-22536807)
chr1 (79-121)||(26768895-26768937)
chr1 (15-115)||(36700860-36700961)
chr1 (15-115)||(36716964-36717065)
chr1 (33-63)||(42720859-42720889)
chr1 (79-124)||(49943999-49944044)
[»] scaffold0286 (1 HSPs)
scaffold0286 (72-115)||(16839-16882)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 4 - 312
Target Start/End: Original strand, 27095929 - 27096237
Alignment:
Q  4 aatgagatacaatcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagaatc 103  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27095929 aatgagatacaatcctctcgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagactc 27096028  T
Q  104 atttaatgataggacccatcaccgacatgctttattttcttaatgaacaatgggattttgatcaaggataattggttgaaacgtgtgatgtaaattcaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27096029 atttaatgataggacccatcaccgacatgctttattttcttaatgaacaataggattttgatcaaggataatttgtttaaacgtgtgatgtaaattcaga 27096128  T
Q  204 ttttcgattgtacattggtggatttagtgttgaagaaaatttaaatcacttttgctttgactgtgtaacgtcttacaaagtttgatgtacgattctgaaa 303  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27096129 ttttcgattgtacattggtggattcagtgttgaagaaaattcaaatcacttttgctttgactgtgtaacgtcttacaaagtttgaagtacgattctgaaa 27096228  T
Q  304 tggcttggg 312  Q
    |||||||||    
T  27096229 tggcttggg 27096237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 2165570 - 2165527
Alignment:
Q  72 ttttttgaaaataattaatgatggtgagaatcatttaatgatag 115  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||    
T  2165570 ttttttaaaaataattaatgatagtgagactcatttaatgatag 2165527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 2177203 - 2177160
Alignment:
Q  72 ttttttgaaaataattaatgatggtgagaatcatttaatgatag 115  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||    
T  2177203 ttttttaaaaataattaatgatagtgagactcatttaatgatag 2177160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 32577466 - 32577568
Alignment:
Q  24 atttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagaatcatttaatgataggacccatc 123  Q
    ||||||||| |||||||||||||  |||| |||||||||| ||| |||  | ||||||| ||||||||||||||  | |||||||||||||||||||| |    
T  32577466 atttaaactcttctccatttcttctatttggagagataaagacacaaaaatcttgaaaaaaattaatgatggtggaactcatttaatgataggacccacc 32577565  T
Q  124 acc 126  Q
    |||    
T  32577566 acc 32577568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 33338311 - 33338204
Alignment:
Q  14 aatcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagaatcatttaatgat 113  Q
    ||||||||  ||||||||| || |||||||||| | |||  ||||||||| ||| |||  | ||||||||| ||||||||| ||||| ||||||||||||    
T  33338311 aatcctctccatttaaactcttttccatttcttccgtttgaagagataaagacacaaaaatcttgaaaatagttaatgatgatgagactcatttaatgat 33338212  T
Q  114 aggaccca 121  Q
    ||||||||    
T  33338211 aggaccca 33338204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 48950545 - 48950657
Alignment:
Q  15 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagaatcatttaatgat 113  Q
    |||||||  ||||||||| ||||| ||||| | |||||| | ||||||||| | |||   | ||||||||||||||||||||||||| ||||||||||||    
T  48950545 atcctctccatttaaactcttctctatttcatccatttacaaagataaaaatacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgat 48950644  T
Q  114 aggacccatcacc 126  Q
    |||| ||| ||||    
T  48950645 aggatccaccacc 48950657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 28229477 - 28229438
Alignment:
Q  79 aaaataattaatgatggtgagaatcatttaatgataggac 118  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  28229477 aaaaaaattaatgatggtgagactcatttaatgataggac 28229438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 41073079 - 41072982
Alignment:
Q  25 tttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    ||||| || |||||||||||||||||||||||||||||| ||| |||   | || ||||||||||||||| ||||||  |||||||||||||||||||    
T  41073079 tttaatctcttctccatttctttcatttagagagataaagacacaaaaaatcttaaaaataattaatgattgtgagatccatttaatgataggaccca 41072982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 373296 - 373192
Alignment:
Q  23 gatttaaactattctccatttctttcatttagagagataaaaaca-taaattttttgaaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    |||||||||| ||||||||||||| |||||||| ||||||| | |  |||  | || |||||||||||| |||||| || ||||||||| ||| ||||||    
T  373296 gatttaaactcttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgaccca 373197  T
Q  122 tcacc 126  Q
     ||||    
T  373196 ccacc 373192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 17286723 - 17286620
Alignment:
Q  15 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagaatc-atttaatgat 113  Q
    |||||||  ||||||||| ||||||||||||| |||||  | ||||||| ||| |||| ||||| ||||||||||| || | | ||||| ||||||||||    
T  17286723 atcctctccatttaaactcttctccatttcttccatttgaaaagataaatacacaaatattttgtaaataattaataatagcg-gaatctatttaatgat 17286625  T
Q  114 aggac 118  Q
    |||||    
T  17286624 aggac 17286620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 374569 - 374536
Alignment:
Q  34 ttctccatttctttcatttagagagataaaaaca 67  Q
    |||||| |||||||||||||||||||||||||||    
T  374569 ttctccctttctttcatttagagagataaaaaca 374536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 28716656 - 28716572
Alignment:
Q  34 ttctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    |||||||||||||||||||| ||||| ||| ||| ||   |||| ||||||||||||||| ||  ||  ||||||||||||| |||||    
T  28716656 ttctccatttctttcatttaaagagagaaagacacaa---ttttaaaaataattaatgatagtaggatccatttaatgatagaaccca 28716572  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 13035090 - 13035174
Alignment:
Q  24 atttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagaatcattta 108  Q
    |||||||||||| ||||||||||  ||||||| ||||||| ||| |||  | ||||||||||||||||||||||||| |||||||    
T  13035090 atttaaactattttccatttcttctatttagaaagataaagacacaaaaatcttgaaaataattaatgatggtgagattcattta 13035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 15901389 - 15901493
Alignment:
Q  19 tcttgatttaaactattctccatttctttcatttagagagataaaaacataaatttt--ttgaaaataattaatgatggtgagaatcatttaatgatagg 116  Q
    |||| |||||| || |||| ||||||||  | || |||||||||||||| || ||||  |||||||||||||||||| || |||  |||||||| |||||    
T  15901389 tcttcatttaatctcttcttcatttcttctactttgagagataaaaacacaatttttttttgaaaataattaatgatagtaagacccatttaataatagg 15901488  T
Q  117 accca 121  Q
    |||||    
T  15901489 accca 15901493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 29916322 - 29916370
Alignment:
Q  19 tcttgatttaaactattctccatttctttcatttagagagataaaaaca 67  Q
    |||| ||||||||| |||| ||||||||||||| |||||||||||||||    
T  29916322 tcttcatttaaactcttcttcatttctttcattcagagagataaaaaca 29916370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 33709154 - 33709186
Alignment:
Q  35 tctccatttctttcatttagagagataaaaaca 67  Q
    |||||||||||||||||| ||||||||||||||    
T  33709154 tctccatttctttcatttggagagataaaaaca 33709186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 43222070 - 43222168
Alignment:
Q  24 atttaaactattctccatttctttcatttagagagataaaaacata-aattttttgaaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    ||||||||| | |||||||| ||||||| ||||||||||| ||| | ||  |||||||||||||||||||||||| ||  |||||||||||| ||||||    
T  43222070 atttaaactctgctccatttatttcattcagagagataaagacacataaaattttgaaaataattaatgatggtgggatccatttaatgataagaccca 43222168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 14733510 - 14733597
Alignment:
Q  34 ttctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    ||||||||||||| |||||||| ||||||| ||| || ||||||  |||||||||| ||||||| || ||||||||| ||| ||||||    
T  14733510 ttctccatttcttccatttagaaagataaagacacaatttttttttaaataattaacgatggtgggactcatttaataataagaccca 14733597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 35650274 - 35650365
Alignment:
Q  36 ctccatttctttcatttagagagataaaaacataaattt-tttgaaaataattaatgatggtgagaatcatttaatgataggacccatcacc 126  Q
    |||||||||||||||||  ||||||| |||||||||    ||| |||||||||||||||||||| | ||||||||| |||||||||| ||||    
T  35650274 ctccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacc 35650365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 2582481 - 2582385
Alignment:
Q  31 ctattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagaatcatttaatgataggacccatcacc 126  Q
    |||||||||||||||||||||| | |||||| | ||| |||   | || |||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  2582481 ctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaatgatgatgagatttatttaatgataggacccaccacc 2582385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 9465739 - 9465790
Alignment:
Q  75 tttgaaaataattaatgatggtgagaatcatttaatgataggacccatcacc 126  Q
    |||||||||||||||||||||||| | |||||||||||||||| ||| ||||    
T  9465739 tttgaaaataattaatgatggtgaaattcatttaatgataggatccaccacc 9465790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 18118631 - 18118537
Alignment:
Q  24 atttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagaatcatttaatgatagga 117  Q
    ||||||| |||||||||||||||  ||||| | ||||||| | |||||   | |||||||||||||||||||||| || ||||||||||||||||    
T  18118631 atttaaattattctccatttcttctatttaaatagataaagatataaaaaatcttgaaaataattaatgatggtgtgactcatttaatgatagga 18118537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 676100 - 676059
Alignment:
Q  76 ttgaaaataattaatgatggtgagaatcatttaatgatagga 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  676100 ttgaaaataattaatgatggtgagactcatttaatgatagga 676059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 30760384 - 30760293
Alignment:
Q  24 atttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagaatcatttaatgata 114  Q
    ||||||||| |||||||||||||||||||  ||||||||| |||||||   | || |||||||||||||||||||  | ||||| |||||||    
T  30760384 atttaaactcttctccatttctttcatttgtagagataaagacataaaaaatcttaaaaataattaatgatggtgcaactcattcaatgata 30760293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 20399996 - 20400094
Alignment:
Q  24 atttaaactattctccatttctttcatttagagagataaaaacataaatttt-ttgaaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    ||||||| |||| ||||||||||  ||||| | ||||||| |||||||   | || ||||||||||||||| ||| || ||||||||||||| ||||||    
T  20399996 atttaaattattttccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagaccca 20400094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 26826114 - 26826072
Alignment:
Q  79 aaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    |||||||||||||||||| | | ||||||||||||||||||||    
T  26826114 aaaataattaatgatggttaaactcatttaatgataggaccca 26826072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 42720586 - 42720668
Alignment:
Q  15 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaattttttgaaaataattaatgatggtg 97  Q
    |||||||| ||||||||| ||||| |||||||  ||||||||||||||| ||| ||| |  ||||||||| ||||| ||||||    
T  42720586 atcctcttcatttaaacttttctctatttcttctatttagagagataaagacaaaaaatacttgaaaatagttaataatggtg 42720668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 24413360 - 24413315
Alignment:
Q  76 ttgaaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  24413360 ttgaaaataattaatgatggtgggacccatttaatgataggaccca 24413315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 22536737 - 22536807
Alignment:
Q  24 atttaaactattctccatttctttcatttagagagataaaaacata-aattttttgaaaataattaatgat 93  Q
    ||||||| | ||||||||||||| |||||| ||||||||| | | | | ||||||||||||||||||||||    
T  22536737 atttaaagtcttctccatttcttccatttaaagagataaagagacatatttttttgaaaataattaatgat 22536807  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 26768895 - 26768937
Alignment:
Q  79 aaaataattaatgatggtgagaatcatttaatgataggaccca 121  Q
    |||||||||||||||||||||| ||| |||||||||| |||||    
T  26768895 aaaataattaatgatggtgagactcacttaatgatagaaccca 26768937  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 36700961 - 36700860
Alignment:
Q  15 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaatt-ttttgaaaataattaatgatggtgagaatc-atttaatga 112  Q
    |||||||  |||||| || ||||| |||||||| |||| |||||||| | ||| |||   ||||||||||||||||||||||||| |||| |||||||||    
T  36700961 atcctctccatttaacctcttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtga-aatctatttaatga 36700863  T
Q  113 tag 115  Q
    |||    
T  36700862 tag 36700860  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 36717065 - 36716964
Alignment:
Q  15 atcctcttgatttaaactattctccatttctttcatttagagagataaaaacataaatt-ttttgaaaataattaatgatggtgagaatc-atttaatga 112  Q
    |||||||  |||||| || ||||| |||||||| |||| |||||||| | ||| |||   ||||||||||||||||||||||||| |||| |||||||||    
T  36717065 atcctctccatttaacctcttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggtga-aatctatttaatga 36716967  T
Q  113 tag 115  Q
    |||    
T  36716966 tag 36716964  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 42720889 - 42720859
Alignment:
Q  33 attctccatttctttcatttagagagataaa 63  Q
    |||||||||||||||||||||||||||||||    
T  42720889 attctccatttctttcatttagagagataaa 42720859  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 49944044 - 49943999
Alignment:
Q  79 aaaataattaatgatggtgagaatcatttaatgataggacccatca 124  Q
    ||||||||||||||||||  || ||||||||| |||||||||||||    
T  49944044 aaaataattaatgatggtaggactcatttaataataggacccatca 49943999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 16839 - 16882
Alignment:
Q  72 ttttttgaaaataattaatgatggtgagaatcatttaatgatag 115  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||    
T  16839 ttttttaaaaataattaatgatagtgagactcatttaatgatag 16882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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