View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_high_1 (Length: 852)
Name: NF6719_high_1
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 363 - 835
Target Start/End: Complemental strand, 54504851 - 54504377
Alignment:
| Q |
363 |
acgtctccgaggatgaggaattggagttgatgaccaaggcgtgggtggtgaaggtggcggaggaggggaagaaagtatgggagctgccataacaacaaca |
462 |
Q |
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| T |
54504851 |
acgtctcggaggatgaggaattggagttgatgaccgaggcgtgggtggtgaaggcggcggaggaggggaagaaagtacgggagctaccataacaacaaca |
54504752 |
T |
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| Q |
463 |
gctagctttaaacccaacctgcaatgacgcttttttccacttatgaaatgatgtattcctgttttcttaagcaccaccattgtattgccgtcgtagtggt |
562 |
Q |
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| T |
54504751 |
gctagctttaaacccaacctgcaatgacgcttttttccacttatgaaatgatgtattcctgttttcttaagcaccaccattgtattgccgtcgtagtggt |
54504652 |
T |
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| Q |
563 |
ctacatgctctcctcttattctacatctatcatagtcttcctcttccacttcgtgtaccgattctgttttgttattgtactgaaacgctgtacaatat-- |
660 |
Q |
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| T |
54504651 |
ctacatgctctcctcttattccacatctatcatagtcttcctcttccacttcgtgtaccgattctgttttgttattgtactgaaatgctgtacaatatat |
54504552 |
T |
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| Q |
661 |
----atatgcatcaatatggagtatatattatcaaatttattttacgtatactatggagccacaattaatatatcaacatttgtttacacgatatatata |
756 |
Q |
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| T |
54504551 |
atatatatgcatcaatatggag----tattatcaaatttattttacgtatactatggagccacaattaatatatcaacatttgtttacacgatatatata |
54504456 |
T |
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| Q |
757 |
tgcaagaaaattatgttgaagataaggaaattaagaagggtgttactattacttactgatagtgtcaccgactatgaat |
835 |
Q |
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| T |
54504455 |
tgcaagaaaattatattgaagataaggaaattaagaagggtgttactattacttactgatagtgtcaccgactatgaat |
54504377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 54505215 - 54504918
Alignment:
| Q |
8 |
gacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcaccaccacctttact |
107 |
Q |
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| T |
54505215 |
gacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcaccaccacctttact |
54505116 |
T |
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| Q |
108 |
accagatgaacttggggacggtgccggtgaaggtgactcgtctgaaggtgaagatgacggggccaatgaagctactgaatctgaaggtgacggtgccagt |
207 |
Q |
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| T |
54505115 |
accagatgaacttggggacggtgccggtgaaggtgactcgtctgaaggtgaagatgacggtgccaatgaagctactgaatctgaaggtgacggtgccagt |
54505016 |
T |
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| Q |
208 |
gatggtgactctgagggtactgaaggcgactttgaca------gtgatggtgatggtgaaactggtgaacgtttccgaggatgaggaatgggagttgacc |
301 |
Q |
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| T |
54505015 |
gatggtgactcggaggg---tgaaggcgactttgacagtgatggtgatggtgatggtgaagctggtgaacgtttccgaggatgaggaattggagttgacc |
54504919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 575
Target Start/End: Complemental strand, 54496660 - 54496539
Alignment:
| Q |
454 |
acaacaacagctagctttaaacccaacctgcaatgacgcttttttccacttatgaaatgatgtattcctgttttcttaagcaccaccattgtattgccgt |
553 |
Q |
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| T |
54496660 |
acaacgacagccagctttaatcccatcttgcaatgacgctttgttccacttatgaaatgatatactcctattttatcaagcacaaccttagtgttgccgt |
54496561 |
T |
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| Q |
554 |
cgtagtggtctacatgctctcc |
575 |
Q |
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| T |
54496560 |
cgtggtgctccacatgttctcc |
54496539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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