View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_high_3 (Length: 421)
Name: NF6719_high_3
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 52693789 - 52693391
Alignment:
| Q |
16 |
tggtgttagcggtagaaagtccaagatcattctgacagtgagtggaaataataacattttcaactccaggtgtattagctttaatatcagcaatgagttt |
115 |
Q |
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| T |
52693789 |
tggtgttagcggtagaaagtccaagatcattctgacagtgagtggaaataataacattttcaactccaggtgtattagctttaatatcagcaattagttt |
52693690 |
T |
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| Q |
116 |
cccaaattcactgggcatggttatgccaacggtgtcaggtatgttgagtgtagtagcccctgccttaataacttctccaagaatttgataaagaaattcc |
215 |
Q |
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| T |
52693689 |
cccaaattcactgggcatggttatgcccacggtgtcaggtatgttgagtgtagtagcccctgccttaataacttctccaagaatttgataaagaaattcc |
52693590 |
T |
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| Q |
216 |
ctatccgacctggtatcatatc-----------------atatcacagaagaatgtgagtgttgaaatgaaatatataagacagtgagtgagtaaatacc |
298 |
Q |
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| T |
52693589 |
ctatccgacctggtatcatatcacagaagaatagttaaaatattacagta-acagtgagtgttgaaatgaaatatataaga---tgagtgagtgaatacc |
52693494 |
T |
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| Q |
299 |
ttccagcatcttcagggctgaattcaacgtcttggcaacctaaactgcgtgcaaatgcaaccatggtgcgtgccttatcaatgacctgttgtttggacat |
398 |
Q |
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| T |
52693493 |
ttccagcatcttcagggctgaattcaacgtcttggcaacctaaactgcgtgcaaatgcaaccatggtgcgtgccttatcaatgacctgttgtttggacat |
52693394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 11707274 - 11707075
Alignment:
| Q |
16 |
tggtgttagcggtagaaagtccaagatcattctgacagtgagtggaaataataacattttcaactccaggtgtattagctttaatatcagcaatgagttt |
115 |
Q |
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|||||||||| |||| |||||||||||||| ||||| || || | ||| ||||||||||||| |||||||||||| ||| ||||||||||| || || |
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| T |
11707274 |
tggtgttagcagtagccagtccaagatcattatgacaatgggttgcaatgataacattttcaattccaggtgtattcatttttatatcagcaataagatt |
11707175 |
T |
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| Q |
116 |
cccaaattcactgggcatggttatgccaacggtgtcaggtatgttgagtgtagtagcccctgccttaataacttctccaagaatttgataaagaaattcc |
215 |
Q |
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||| ||||| ||||| | ||||||||| |||||||||||| | || || ||||| || || ||||||||||| | || ||||||||| |||||| |
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| T |
11707174 |
tccatattcaaatggcattgctatgccaacagtgtcaggtatgaccacagttgttgccccagctttgataacttctcccaaaacttgataaaggaattcc |
11707075 |
T |
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