View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_high_4 (Length: 396)
Name: NF6719_high_4
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 2354221 - 2353848
Alignment:
| Q |
20 |
ttatcaacttcatcctcataagtaatcatgtttgcaaaaagagaactcttcaacttatttgtcttctcttttgaattagcaattctttcatgaattttag |
119 |
Q |
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| T |
2354221 |
ttatcaacttcatcctcataagtaatcatgtttgcaaaaagagaactcttcaacttatttgtcttctcttttgaattagcaattatttcatgaattttag |
2354122 |
T |
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| Q |
120 |
aaatttaacttttacctaaccaaactagctcttatggttgaaatcttatgccatattgatcaccatatttatttccttaccaaccgttagttagtagtat |
219 |
Q |
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| T |
2354121 |
acatttaacttttacctaaccaaactagctcttatggttgaaatcttatgccatattgatcaccatatttatttccttaccaaccgttagttactagtat |
2354022 |
T |
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| Q |
220 |
aaacatcatatatctcatatttgtaacaatgaggtagatcttttagattggttaaacatttaacaaagtgtcttgatttggagtttggtcagacatatat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2354021 |
aaacatcatatatctcatatttgtaacaatgaggtagatcttttagattggttaaacatttaacaaagtgtcttgatttggagtttggtcagacatatat |
2353922 |
T |
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| Q |
320 |
aaacatgaggtagacctttttagctcagttaatcaaaattaccgaattaaaaagtgaacgattcctaacaccat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353921 |
aaacatgaggtagacctttttagctcagttaatcaaaattaccgaattaaaaagtgaacgattcctaacaccat |
2353848 |
T |
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