View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_high_9 (Length: 287)
Name: NF6719_high_9
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 37444326 - 37444064
Alignment:
| Q |
18 |
aatattacaacgaattgtatagttaaaatgcaattgcacactaannnnnnnaaacattggttttagaagggtatttgagattgtagaaggacttggaaac |
117 |
Q |
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| T |
37444326 |
aatattacaacgaattgga--gttaaaatgcaattgcacactaatttttttaaacattgtttttagaagggtatttgagattgtagaaggacttggaaac |
37444229 |
T |
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| Q |
118 |
acagtggtactacatataaacaatcattttagagctacaatttcggtgtgtttggtttctcgtccatcctctttttcgcatgtcttcgatatgatattaa |
217 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37444228 |
acagtggtacta----tacacaatcattttagagctacaatttcggtgtgtttggtttctcgtccatcctctttttcgcatgtcttcgatatgatattaa |
37444133 |
T |
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| Q |
218 |
atttgatttcttcnnnnnnnctgcaaatgtgataggtgggcatgtccatcaagtagagtgagagagacct |
287 |
Q |
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| T |
37444132 |
atttgatttcttc-aaaaaactgcaaatgtgataagtgggcaggtccatcaagtagagcgagagagacct |
37444064 |
T |
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