View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6719_low_12 (Length: 282)
Name: NF6719_low_12
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_low_12 |
 | |
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| [»] scaffold0133 (3 HSPs) |
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| [»] chr6 (11 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
| | |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0144 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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| [»] scaffold0230 (1 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 8379 - 8108
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8379 |
acatcaatggatttctgtactggaaagtgaattttggaatttgcctgaggttgattctatcatgtctgctttgagaataagctactttaacttgaaattg |
8280 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
8279 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaaaatctcattcatctttggatggctaatggtcttgtta |
8180 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8179 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
8108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 12721 - 12467
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||| |||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
12721 |
acatcaatggatttctgtactagaaagtgagttttggagtttacctgaggttgatcctatcatgtctgctttgagactaagctattttaacttgaaattg |
12622 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| || | || ||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
12621 |
tcattgaggccatgttttactttctgtgctgtttttcccaaagattatgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgtta |
12522 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaatt |
265 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
12521 |
catctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaatt |
12467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 17927 - 17673
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||| ||||| || |||||||||| |||||||||| |||||| | | |||| ||||||||||||||| ||||||||||||| ||||||| | |
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|
| T |
17927 |
acatcaatggctttctgtaaaggaaagtgaggtttggaatttatctgaggataaccctataatgtctgctttgagactaagctactttaatttgaaatcg |
17828 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
|| ||||| || |||||| |||| ||| ||||||||||||||| |||||||||||| |||||| || |||||| |||||||||||||||||||||||| |
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| T |
17827 |
tccttgaggccctgttttactttttgtactgtttttcctaaggattttgaaatggtgaaggaaaatatcattccattttggatggctaatggacttgtta |
17728 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaatt |
265 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
17727 |
catcaagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaatt |
17673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 16987326 - 16987055
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||| ||||||| |||| |||| || |||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
16987326 |
acatcaatggatttctgtactggaaagtgagatttggaatttacctgaggatgatcctatcatttctgctttgagactaagctacttcaacatgaaattg |
16987227 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
||| | || ||||||||| | |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16987226 |
tcactaaggccatgttttaccttctgtgctgtttttcctaaggattttgaaatggtgaaggaagatctcattcatctttggatggctaatggacttgtta |
16987127 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16987126 |
catctagaggtaatttacagatggagcatgttggtgatgaggtatggaatcaattatggcaaagatcatttt |
16987055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 16787839 - 16787568
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||| ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
16787839 |
acatcaatggatttctgtactggaaagtgagttttggaatttaactgaggatgatcctatcatgtctgttttgagactaagctactttaacttgaaattg |
16787740 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
|| ||||| ||||||||| | ||||| ||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787739 |
tccttgaggccatgttttaccttctgcgctgtttttcccaaggattttgaaatggtgaaggaaaatctcattcatctttggatggctaatggacttgtta |
16787640 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||| |||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
16787639 |
catctagaggaaacttacagatggaggatgttggtaatgaggtatggaatgaattataccaaaggtcatttt |
16787568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 16797041 - 16796770
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||| ||| |||||||| ||| ||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
16797041 |
acatcaatggatttctgtactggaaagtgaattttggaatttacctcaggttgatcgtatcatgtctgctttgacactaagctactttaacttgaaattg |
16796942 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16796941 |
tcattgaggccatgttttactttctgcgctgtttttcctaaggattttgaaatggtgaaggaacatctcattcatctttggatggctaatggacttgtta |
16796842 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| ||| | ||||| || |||| | ||||| ||||||| |
|
|
| T |
16796841 |
catctagaggtaatttacagatggagcatgttggtaatgggatatgggatgaattataccaaaggtcatttt |
16796770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 16657889 - 16657613
Alignment:
| Q |
6 |
gatggacatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttga |
105 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||||||||| |||| | | | | | ||||||||||||||| | |||||||||||||||| |
|
|
| T |
16657889 |
gatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccatgtcatgtctgctttgagactgagctactttaacttga |
16657790 |
T |
|
| Q |
106 |
aattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggact |
205 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
16657789 |
aattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggataaggaagaactcattaaactttggatggctaatggact |
16657690 |
T |
|
| Q |
206 |
tgttacatctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |||||| |||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
16657689 |
tgttatatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcatttt |
16657613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 16780971 - 16780700
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||| ||||| || |||||||||| ||||||| || |||||| | | |||| ||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
16780971 |
acatcaatggctttctgtaaaggaaagtgagctttggaagttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaatttg |
16780872 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
|| || || || |||||| |||| ||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16780871 |
tccttaaggccgtgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgtta |
16780772 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| |||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
16780771 |
catctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcatttt |
16780700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 16868284 - 16868560
Alignment:
| Q |
6 |
gatggacatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttga |
105 |
Q |
| |
|
|||| ||||||||||| |||| | |||||||||||||||||||||| | || | | | | | ||||||||||||||| | |||||||||||||||| |
|
|
| T |
16868284 |
gatgaacatcaatggacttctgtggtggaaagtgagttttggaatttagcagatgataaccatgtcatgtctgctttgagactgagctactttaacttga |
16868383 |
T |
|
| Q |
106 |
aattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggact |
205 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| |||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
16868384 |
aattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggaaaaggaatttttcattcaactttggatggctaatggact |
16868483 |
T |
|
| Q |
206 |
tgttacatctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
16868484 |
tgttacatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcatttt |
16868560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 17069383 - 17069107
Alignment:
| Q |
6 |
gatggacatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttga |
105 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||||||||| || | | || | ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
17069383 |
gatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagacgatgagaaccctgtcatgtctgctttgagactaagctactataacttga |
17069284 |
T |
|
| Q |
106 |
aattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggact |
205 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
17069283 |
aattgtcattgaggccatgttttactttctgtgttgtttttcctaaggattttgtaatggtgaaggaaaggctcattcatctttggatggctaatggatt |
17069184 |
T |
|
| Q |
206 |
tgttacatctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||||| ||||| || |||| | ||||| ||||||| |
|
|
| T |
17069183 |
tgttacatctagaggtaatttacagatggagcatgttggtaatgagatatgggatgaattataccaaaggtcatttt |
17069107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 18806541 - 18806677
Alignment:
| Q |
67 |
ctattatgtctgctttgagaataagctactttaacttgaaattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggt |
166 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||| |||||||| ||| |||| | |||||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
18806541 |
ctatcatgtctgttttgagactcagctactttaatttgaaattatcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggt |
18806640 |
T |
|
| Q |
167 |
taaggaagatctcattcatctttggatggctaatgga |
203 |
Q |
| |
|
|||||||| || || ||||||||| ||||||||||| |
|
|
| T |
18806641 |
gaaggaagaactgatccatctttggttggctaatgga |
18806677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 18873535 - 18873671
Alignment:
| Q |
67 |
ctattatgtctgctttgagaataagctactttaacttgaaattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggt |
166 |
Q |
| |
|
|||| ||||||| |||||| | ||||||||||| |||||||| ||| |||| | |||||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
18873535 |
ctatcatgtctgtattgagactcagctactttaatttgaaattatcactgaggctgtgttttactttttgtgcggtttttcctaaggattttgaaatggt |
18873634 |
T |
|
| Q |
167 |
taaggaagatctcattcatctttggatggctaatgga |
203 |
Q |
| |
|
|||||||| || || ||||||||| ||||||||||| |
|
|
| T |
18873635 |
gaaggaagaactgatccatctttggttggctaatgga |
18873671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 16843584 - 16843429
Alignment:
| Q |
105 |
aaattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggac |
204 |
Q |
| |
|
||||| ||||||| ||||||||| | || |||||||| |||||||| | ||||| |||||| ||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
16843584 |
aaattatcattgaagccatgttttacattttgtgctgtatttcctaaagattttgtaatggtgaaggaagatgtaattcatctttggatggcaaatggat |
16843485 |
T |
|
| Q |
205 |
ttgttacatctagaggaaatttacagatggagcacgttggtgatgaggtatggaat |
260 |
Q |
| |
|
|| || | || |||||||||||| |||||||| | ||||| ||||||| |||||| |
|
|
| T |
16843484 |
ttatttcctccagaggaaatttagagatggaggaggttggcaatgaggtgtggaat |
16843429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 18870525 - 18870587
Alignment:
| Q |
141 |
gtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatgga |
203 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| || || ||||||||| || |||||||| |
|
|
| T |
18870525 |
gtttttcctaaggattttgaaatggtgaaggaagaactgatccatctttggttgactaatgga |
18870587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 9002 - 8769
Alignment:
| Q |
32 |
ggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattgtcattgagaccatgttttgct |
131 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| || |
|
|
| T |
9002 |
ggaaagtgagctttggaatttaactgaggatgatcctatcatgtctgctttgagactaagctactttaatttgaaattgtccttgagaccatgttttact |
8903 |
T |
|
| Q |
132 |
ttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgttacatctagaggaaatttacaga |
231 |
Q |
| |
|
|| ||||||||||||||||| | |||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8902 |
ttttgtgctgtttttcctaaagattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgttacatctagaggaaatttacaga |
8803 |
T |
|
| Q |
232 |
tggagcacgttggtgatgaggtatggaatcaatt |
265 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||| |
|
|
| T |
8802 |
tggagcatgttggtaatgaggtatggaatgaatt |
8769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 38939648 - 38939919
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||| ||||| || |||||||||| |||||||||| |||||| | | |||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
38939648 |
acatcaatggttttctgtaaaggaaagtgagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattg |
38939747 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
|| ||||| ||||||||| ||| ||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38939748 |
tccttgaggccatgttttaatttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattcaactttggatggctaatggacttgtta |
38939847 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||| |||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
38939848 |
catcaagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattataccaaaggtcatttt |
38939919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 7053555 - 7053826
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||||| |||||| | || | || |||||||||||||| | ||||||| ||| ||||||||| |
|
|
| T |
7053555 |
acatcaatggctttctataaaggaaagcaagttttggaatttatctgaggataatccaatcatgtctgctttgaggctgagctactataatttgaaattg |
7053654 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
||||||| || |||||| |||| |||||||||||||| || | |||||| || ||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
7053655 |
ccattgaggccttgtttttctttttgtgctgtttttcccaaagattttgagatacataaggaatgcctcattcatctttggatggctaatggacttctta |
7053754 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||| |||| | ||||||||||||| |
|
|
| T |
7053755 |
catctagaggaaatttacagatggagcttcttggtaatgaggtatggaatgaattatatcaaagatcatttt |
7053826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 37367 - 37091
Alignment:
| Q |
6 |
gatggacatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttga |
105 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||||||||| |||| | | | | ||||||||||||||| | |||||||||||||||| |
|
|
| T |
37367 |
gatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctgatgataaccaagtcatgtctgctttgagactgagctactttaacttga |
37268 |
T |
|
| Q |
106 |
aattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggact |
205 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||||||||||||| |||| ||||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
37267 |
aattgtcattgaggccatgttttactttttgtgctgtttttcctaaggattttaaaatggtgaaggaaaatctcattcaactttggatggctaatggact |
37168 |
T |
|
| Q |
206 |
tgttacatctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| |||||| |||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
37167 |
tgttgcatctagaggaaacttacagatggagcatgttggtaatgaggtatggaatgaattatatcaaaggtcatttt |
37091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 13377963 - 13377693
Alignment:
| Q |
11 |
acatcaatggatttctatactggaaagtgagttttggaatttgcctgaggttgattctattatgtctgctttgagaataagctactttaacttgaaattg |
110 |
Q |
| |
|
|||||||||| ||||| || ||||||| || |||||||||| |||||| | | |||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
13377963 |
acatcaatggctttctgtaaaggaaagtaagctttggaatttatctgaggataaccctatcatgtctgctttgagactaagctactttaatttgaaattg |
13377864 |
T |
|
| Q |
111 |
tcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggttaaggaagatctcattcatctttggatggctaatggacttgtta |
210 |
Q |
| |
|
|| ||||| ||||||||| |||| ||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13377863 |
tccttgaggccatgttttactttttgtgctgtttttcctaaggattttgaaatggtgaaggaaaatctcattctactttggatggctaatggacttgtta |
13377764 |
T |
|
| Q |
211 |
catctagaggaaatttacagatggagcacgttggtgatgaggtatggaatcaattgtggcaaagatcatttt |
282 |
Q |
| |
|
||||||||||||| ||||| | |||||| |||||| ||||||||||| || | || || ||||||||||||| |
|
|
| T |
13377763 |
catctagaggaaacttaca-acggagcatgttggtaatgaggtatgggatgagttatgccaaagatcatttt |
13377693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 9169 - 9033
Alignment:
| Q |
67 |
ctattatgtctgctttgagaataagctactttaacttgaaattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggt |
166 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||| |||||||| ||| |||| || |||||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
9169 |
ctatcatgtctgttttgagactcagctactttaatttgaaattatcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggt |
9070 |
T |
|
| Q |
167 |
taaggaagatctcattcatctttggatggctaatgga |
203 |
Q |
| |
|
||||||| || || ||||||||| ||||||||||| |
|
|
| T |
9069 |
gaaggaagcactgatccatctttggttggctaatgga |
9033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 4488 - 4352
Alignment:
| Q |
67 |
ctattatgtctgctttgagaataagctactttaacttgaaattgtcattgagaccatgttttgctttctgtgctgtttttcctaagggttttgaaatggt |
166 |
Q |
| |
|
|||| |||| || ||||||| | ||||||||||| || ||||| ||| |||| || |||||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
4488 |
ctatcatgtttgttttgagactcagctactttaatttaaaattatcactgaggccgtgttttactttttgtgcggtttttcctaaggattttgaaatggt |
4389 |
T |
|
| Q |
167 |
taaggaagatctcattcatctttggatggctaatgga |
203 |
Q |
| |
|
|||||||| || || ||||||||| ||||||||||| |
|
|
| T |
4388 |
gaaggaagaactgatccatctttggttggctaatgga |
4352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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