View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6719_low_13 (Length: 251)

Name: NF6719_low_13
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6719_low_13
NF6719_low_13
[»] chr7 (3 HSPs)
chr7 (12-249)||(37444965-37445201)
chr7 (69-109)||(9483385-9483425)
chr7 (181-243)||(34943587-34943649)
[»] chr3 (3 HSPs)
chr3 (63-123)||(51497977-51498037)
chr3 (74-123)||(51733131-51733180)
chr3 (69-121)||(26643296-26643348)
[»] chr2 (3 HSPs)
chr2 (61-121)||(41047863-41047923)
chr2 (69-121)||(6736479-6736531)
chr2 (62-102)||(41508544-41508584)
[»] chr1 (2 HSPs)
chr1 (69-121)||(3523380-3523433)
chr1 (69-121)||(21057772-21057824)
[»] chr5 (3 HSPs)
chr5 (69-121)||(4206315-4206367)
chr5 (61-102)||(1375921-1375962)
chr5 (69-102)||(35972048-35972081)
[»] chr4 (1 HSPs)
chr4 (69-121)||(43093543-43093595)
[»] scaffold0024 (1 HSPs)
scaffold0024 (69-123)||(151418-151472)
[»] chr8 (2 HSPs)
chr8 (62-116)||(10170397-10170451)
chr8 (69-121)||(14227211-14227263)
[»] chr6 (1 HSPs)
chr6 (69-101)||(32694776-32694808)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 37445201 - 37444965
Alignment:
Q  12 gtttggtgttagatatatgttaaatgtacaattctgaaatgacattgtaacatgtatttacattcaattattctattttatcaaattattatcggtgtag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||    
T  37445201 gtttggtgttagatatatgttaaatgtacaattctgaaatgacattgtaacatgtatttacattcaattattctattttgtcaaattattataagtgtag 37445102  T
Q  112 acgtgtcagtattgtgtccgctcgagtatatttcatttcatagattagaacttacgacaaatccgggcgtgcaaatgtcataagtagaaattaatgactt 211  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37445101 acgtgtcattattgtgtccgctcgagtatatttcatttcatagattagaacttacgacaaatcc-ggcgtgcaaatgtcataagtagaaattaatgactt 37445003  T
Q  212 ctttactacatttatgatatagacatggaccctcttct 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37445002 ctttactacatttatgatatagacatggaccctcttct 37444965  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 9483425 - 9483385
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgt 109  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  9483425 ttacattcaattattctattttctcaaattattattggtgt 9483385  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 34943649 - 34943587
Alignment:
Q  181 tgcaaatgtcataagtagaaattaatgacttctttactacatttatgatatagacatggaccc 243  Q
    ||||||||| ||||| ||||||||| || ||||| || |||||||||  ||||||||||||||    
T  34943649 tgcaaatgttataagaagaaattaaagatttcttcacaacatttatgtcatagacatggaccc 34943587  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 51498037 - 51497977
Alignment:
Q  63 atgtatttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagtat 123  Q
    ||||| ||||||||||||||||||||||||||||||||||   |||| |||||||||||||    
T  51498037 atgtagttacattcaattattctattttatcaaattattactagtgtggacgtgtcagtat 51497977  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 51733180 - 51733131
Alignment:
Q  74 ttcaattattctattttatcaaattattatcggtgtagacgtgtcagtat 123  Q
    ||||||||||||||||| |||| |||||||||||||  || |||||||||    
T  51733180 ttcaattattctattttctcaagttattatcggtgtcaacctgtcagtat 51733131  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 26643296 - 26643348
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    |||||||||||||||||||||| | ||||||||| | || | |||||||||||    
T  26643296 ttacattcaattattctattttcttaaattattaccagtatcgacgtgtcagt 26643348  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 41047923 - 41047863
Alignment:
Q  61 acatgtatttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    |||||| ||||||||||||||||| | ||| ||||||||||||| |||| |||||||||||    
T  41047923 acatgtgtttacattcaattattccactttttcaaattattatcagtgtcgacgtgtcagt 41047863  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 6736531 - 6736479
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    |||||||||||||||| || || ||||||||||| |||||| |||||||||||    
T  6736531 ttacattcaattattccatattctcaaattattaccggtgtcgacgtgtcagt 6736479  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 41508584 - 41508544
Alignment:
Q  62 catgtatttacattcaattattctattttatcaaattatta 102  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  41508584 catgtagttacattcaattattctattttctcaaattatta 41508544  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 3523433 - 3523380
Alignment:
Q  69 ttacattcaatta-ttctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    ||||||||||| | ||||||||||||||||||||||||||||  ||||||||||    
T  3523433 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagt 3523380  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 21057824 - 21057772
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    ||||||||||||||  |||||| | ||||||||| |||||| |||||||||||    
T  21057824 ttacattcaattatgttattttctaaaattattagcggtgtcgacgtgtcagt 21057772  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 4206367 - 4206315
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    |||||||||| |||| |||||| ||||||||||| |||||| |||||||||||    
T  4206367 ttacattcaaatattttattttctcaaattattaacggtgttgacgtgtcagt 4206315  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 1375921 - 1375962
Alignment:
Q  61 acatgtatttacattcaattattctattttatcaaattatta 102  Q
    |||||| ||||||||||||||| ||||||| |||||||||||    
T  1375921 acatgtttttacattcaattatgctattttttcaaattatta 1375962  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 35972048 - 35972081
Alignment:
Q  69 ttacattcaattattctattttatcaaattatta 102  Q
    |||||||||||||||||||||||| |||||||||    
T  35972048 ttacattcaattattctattttattaaattatta 35972081  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 43093543 - 43093595
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    |||||||||||||| | ||||| |||||||||||| ||||| |||||||||||    
T  43093543 ttacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagt 43093595  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 151418 - 151472
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagtat 123  Q
    ||||||| ||||||| |||||| |||||||||||||||||| | ||||| |||||    
T  151418 ttacatttaattattttattttctcaaattattatcggtgttgtcgtgtaagtat 151472  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 10170397 - 10170451
Alignment:
Q  62 catgtatttacattcaattattctattttatcaaattattatcggtgtagacgtg 116  Q
    |||||| ||||||||||||| | |||||| |||||||||||| ||||| ||||||    
T  10170397 catgtagttacattcaattaatttattttctcaaattattattggtgttgacgtg 10170451  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 14227263 - 14227211
Alignment:
Q  69 ttacattcaattattctattttatcaaattattatcggtgtagacgtgtcagt 121  Q
    ||||||| ||||||  |||||| |||||||||||| ||||| |||||||||||    
T  14227263 ttacattgaattatgttattttctcaaattattattggtgttgacgtgtcagt 14227211  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 32694776 - 32694808
Alignment:
Q  69 ttacattcaattattctattttatcaaattatt 101  Q
    |||||||||||||||||||||| ||||||||||    
T  32694776 ttacattcaattattctattttctcaaattatt 32694808  T

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