View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_low_14 (Length: 246)
Name: NF6719_low_14
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_low_14 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 9786696 - 9786937
Alignment:
| Q |
5 |
gatggacatcatcaaaacaacacatgctaccttaatgcttgccattgtttttctttgtaaagagaaatgtgtctttgtttttctaggtatgtttgattgg |
104 |
Q |
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| T |
9786696 |
gatgcacatcatcaaaagaacacatgctaccttcatgcttgccattatatttctttgtaaagagaaatgtgtctttgtttttctaggtttgtttgattgg |
9786795 |
T |
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| Q |
105 |
tgagtgtagagtggaagagggtgggggtttatatagnnnnnnngatgaggtgggaattggaatttagagaagatgggaagatgagcagagtgatggcgtt |
204 |
Q |
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| T |
9786796 |
tgagtgtagagtggaagagggtgggggtttatatagaaaaaaagatgaggtgggaattggaatttagagaagatgggaagatgagcagagtgatggcgtt |
9786895 |
T |
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| Q |
205 |
ggcgtagtgcatgtagctctgtcggtattggtggtagttgaa |
246 |
Q |
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| T |
9786896 |
ggcgtagtgcatgtagctctgtcggtattggtggtagttgaa |
9786937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 9831974 - 9831757
Alignment:
| Q |
10 |
acatcatcaaaacaacacatgctaccttaatgcttgccattgtttttctt------------tgtaaagagaaatgtgtctttgtttttctaggtatgtt |
97 |
Q |
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| T |
9831974 |
acatcatcaaaacaacacatgctaccttcatgcttgccatttttttccttaaaataaaattttgtaaagataaatgtttctttgtttttctttggttgtt |
9831875 |
T |
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| Q |
98 |
tgattggtgagtgtagagtggaagagggtgggggtttatatagnnnnnnngatgaggtgggaattggaatttagagaagatgggaagatgagcagagtga |
197 |
Q |
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| T |
9831874 |
tgttttgtgagtata-agtgtaagagggtggaggtttatatagaaaaaaagatgaggtgggatttggaatttggagaaggtgggaagatgagcatagtga |
9831776 |
T |
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| Q |
198 |
tggcgttggcgtagtgcat |
216 |
Q |
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| T |
9831775 |
tggcatttgcttagtgcat |
9831757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 9799247 - 9799359
Alignment:
| Q |
76 |
tctttgtttttctaggtatgtttgattggtgagtgtagagtggaagagggtgggggtttatatagnnnnnnngatgaggtgggaattggaatttagagaa |
175 |
Q |
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||||||||||||| || |||||| |||||||||||| |||| |||||||||| ||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
9799247 |
tctttgtttttctttgt-tgtttgtttggtgagtgtaaagtgtaagagggtggaggtttatatag-aagaaagatgaggtgggatttggaatttggagaa |
9799344 |
T |
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| Q |
176 |
gatgggaagatgagc |
190 |
Q |
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| T |
9799345 |
ggtgcgaagatgagc |
9799359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 9812603 - 9812652
Alignment:
| Q |
10 |
acatcatcaaaacaacacatgctaccttaatgcttgccattgtttttctt |
59 |
Q |
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| T |
9812603 |
acatcatcaaaacaacacatgctatcttcatgtttgccattgtttttctt |
9812652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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