View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6719_low_15 (Length: 239)

Name: NF6719_low_15
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6719_low_15
NF6719_low_15
[»] chr5 (12 HSPs)
chr5 (1-235)||(38443402-38443636)
chr5 (1-138)||(38182646-38182783)
chr5 (1-138)||(38188348-38188485)
chr5 (1-138)||(38209872-38210009)
chr5 (1-138)||(38215573-38215710)
chr5 (1-133)||(38452961-38453093)
chr5 (1-138)||(38169817-38169954)
chr5 (1-138)||(38185606-38185743)
chr5 (1-138)||(38212614-38212751)
chr5 (13-138)||(38219947-38220072)
chr5 (1-179)||(38155888-38156066)
chr5 (161-235)||(38452880-38452957)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 38443402 - 38443636
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| ||||  ||||| |||||||||| |||||||||| ||||||||||||||||     
T  38443402 ataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccc 38443501  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggcttatgctatcaagctcaaacaattttccgtcaactcgctcaattccgttcatgttcctcctgta 200  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38443502 tgttaacaacaacaaggcatcttttgattctttggcttctgctatcaagctcaaacaattttccgtcaactcgctcaattccgttcatgttcctcctgta 38443601  T
Q  201 gaagatttatctcctcctactacacctccaactcc 235  Q
    |||||||||||||||| ||||||||||||| ||||    
T  38443602 gaagatttatctcctcttactacacctccacctcc 38443636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38182783 - 38182646
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || |  ||||| |||||||||| |||||||||| ||||||||||| ||||     
T  38182783 ataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccc 38182684  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggctt 138  Q
    | || |||||||||||||||||| ||||||||||||||    
T  38182683 tattaacaacaacaaggcatcttttgattctttggctt 38182646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38188348 - 38188485
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || |  ||||| |||||||||| |||||||||| ||||||||||| ||||     
T  38188348 ataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccc 38188447  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggctt 138  Q
    | || |||||||||||||||||| ||||||||||||||    
T  38188448 tattaacaacaacaaggcatcttttgattctttggctt 38188485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38210009 - 38209872
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || |  ||||| |||||||||| |||||||||| ||||||||||| ||||     
T  38210009 ataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccc 38209910  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggctt 138  Q
    | || |||||||||||||||||| ||||||||||||||    
T  38209909 tattaacaacaacaaggcatcttttgattctttggctt 38209872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38215573 - 38215710
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || |  ||||| |||||||||| |||||||||| ||||||||||| ||||     
T  38215573 ataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccc 38215672  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggctt 138  Q
    | || |||||||||||||||||| ||||||||||||||    
T  38215673 tattaacaacaacaaggcatcttttgattctttggctt 38215710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 38453093 - 38452961
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| ||||||||||||| |||| ||||| ||||| ||||  ||||| |||||||||| |||||||||| ||||||||||||||||     
T  38453093 ataacgaagaagatctcaatcatatgatgttagagtatgatcatatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtcct 38452994  T
Q  101 tgttcacaacaacaaggcatcttctgattcttt 133  Q
    |||| |||||||||||||||||| |||||||||    
T  38452993 tgttaacaacaacaaggcatcttttgattcttt 38452961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38169817 - 38169954
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||  ||||| |||||||||| || ||||||| ||||||||||| ||||     
T  38169817 ataacgaagaagatctcaatcatattatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccc 38169916  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggctt 138  Q
    | || |||||||||||||||||| ||||||||||||||    
T  38169917 tattaacaacaacaaggcatcttttgattctttggctt 38169954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38185606 - 38185743
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || |  ||||| |||||||||| ||||||| || ||||||||||| ||||     
T  38185606 ataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccc 38185705  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggctt 138  Q
    | || |||||||||||||||||| ||||||||||||||    
T  38185706 tattaacaacaacaaggcatcttttgattctttggctt 38185743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38212751 - 38212614
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || |  ||||| |||||||||| ||||||| || ||||||||||| ||||     
T  38212751 ataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccc 38212652  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggctt 138  Q
    | || |||||||||||||||||| ||||||||||||||    
T  38212651 tattaacaacaacaaggcatcttttgattctttggctt 38212614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 38219947 - 38220072
Alignment:
Q  13 atctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtccatgttcacaacaa 112  Q
    ||||| |||||||||||||||||| ||||||||||| || |  ||||| |||||||||| |||||||||| ||||||||||| |||| | || |||||||    
T  38219947 atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa 38220046  T
Q  113 caaggcatcttctgattctttggctt 138  Q
    ||||||||||| ||||||||||||||    
T  38220047 caaggcatcttttgattctttggctt 38220072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 38155888 - 38156066
Alignment:
Q  1 ataacgaagaagatctcgatcatatgatgttcgagtgtgatcgtatgtttcacaattcaccaaagcctgcaaggttgagggtattcctcttccctgtcca 100  Q
    |||||||||||||||| ||||||||||||||||||   |||||| | | |  |  ||||| ||||||||||| ||||||||| |||||||||||| |||     
T  38155888 ataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgcttttcacgaaagcctgcaaagttgagggtcttcctcttccctctccc 38155987  T
Q  101 tgttcacaacaacaaggcatcttctgattctttggcttatgctatcaagctcaaacaattttccgtcaactcgctcaat 179  Q
    | ||  ||||||||||||||||| | ||||||||||||   ||||||| |||||||| || |||||| |||||||||||    
T  38155988 tattagcaacaacaaggcatcttttaattctttggcttccactatcaatctcaaacagttgtccgtcgactcgctcaat 38156066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 38452957 - 38452880
Alignment:
Q  161 ttccgtcaactcgctcaattccgttcatgttcctcc---tgtagaagatttatctcctcctactacacctccaactcc 235  Q
    ||||||| ||||||||||||||||||| ||| ||||   || |||| ||| ||||||||||||||| |||||| ||||    
T  38452957 ttccgtcgactcgctcaattccgttcaagtttctccttttgaagaatattcatctcctcctactacgcctccacctcc 38452880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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