View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_low_17 (Length: 235)
Name: NF6719_low_17
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18014509 - 18014287
Alignment:
| Q |
1 |
tttttcccaaacaactaagaaactgacatttttattcgtcctagtttaaacatatatgatatatctaaacaatatgtgaaattctacttcccattttcat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18014509 |
tttttcccaaacaactaagaaaatgacatttttattcgtcctagtttaaacatatatgatatatctaaacaatatgtgaaattctacttcccattttcat |
18014410 |
T |
|
| Q |
101 |
tcttccatttcctctcactcaattttctaccagaacattaaagtttcaagtagctagtgagagtttgaagagaagaaagaagttaaaatatgatccctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18014409 |
tcttccatttcctctcactcaattttctaccagaacattaaagtttcaagtagctagtgagagtttgaagagaagaaagaagttaaaatatgatccctag |
18014310 |
T |
|
| Q |
201 |
tacagaattaataacatatttag |
223 |
Q |
| |
|
||||||||||||||| ||||||| |
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| T |
18014309 |
tacagaattaataacgtatttag |
18014287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3064812 - 3065034
Alignment:
| Q |
1 |
tttttcccaaacaactaagaaactgacatttttattcgtcctagtttaaacatatatgatatatctaaacaatatgtgaaattctacttcccattttcat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3064812 |
tttttcccaaacaactaagaaaatgacatttttattcgtcctagtttaaacatatatgatatatctaaacaatatgtgaaattctacttcccattttcat |
3064911 |
T |
|
| Q |
101 |
tcttccatttcctctcactcaattttctaccagaacattaaagtttcaagtagctagtgagagtttgaagagaagaaagaagttaaaatatgatccctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3064912 |
tcttccatttcctctcactcaattttctaccagaacattaaagtttcaagtagctagtgagagtttgaagagaagaaagaagttaaaatatgatccctag |
3065011 |
T |
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| Q |
201 |
tacagaattaataacatatttag |
223 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
3065012 |
tacagaattaataacgtatttag |
3065034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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