View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6719_low_19 (Length: 206)

Name: NF6719_low_19
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6719_low_19
NF6719_low_19
[»] chr4 (15 HSPs)
chr4 (1-206)||(6794286-6794491)
chr4 (1-206)||(6813616-6813821)
chr4 (1-203)||(6589960-6590162)
chr4 (1-206)||(6725772-6725977)
chr4 (1-159)||(6713653-6713811)
chr4 (1-204)||(6672497-6672700)
chr4 (1-206)||(6500268-6500473)
chr4 (1-206)||(6750689-6750894)
chr4 (1-206)||(6756307-6756512)
chr4 (1-206)||(6535572-6535777)
chr4 (13-202)||(6648909-6649098)
chr4 (1-206)||(6624349-6624554)
chr4 (5-202)||(6547827-6548024)
chr4 (1-206)||(6834016-6834221)
chr4 (24-204)||(8412728-8412908)
[»] scaffold0373 (1 HSPs)
scaffold0373 (1-206)||(11812-12018)
[»] chr6 (1 HSPs)
chr6 (16-104)||(5133940-5134028)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 6794286 - 6794491
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6794286 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 6794385  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6794386 gggacacagatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 6794485  T
Q  201 tatatt 206  Q
    ||||||    
T  6794486 tatatt 6794491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 6813616 - 6813821
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    |||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||    
T  6813616 atggggggtatgggtaaaacaacccttgccaaagcaatttataatcaaattgggagcaaatttgagggaaggagctttcttctgaacattagggaacttt 6813715  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| || ||||||||||||||||||||||||||||| ||||||  |||||||| |||| ||  | ||||||| |||| ||| || ||||||||||||||    
T  6813716 gggagacagatactaatcaagtttctctacagcaacaaatactttgtgatgtttgcaaaacaacggcattcaagatacatgacatcgaatcagggaaaaa 6813815  T
Q  201 tatatt 206  Q
    ||||||    
T  6813816 tatatt 6813821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 6590162 - 6589960
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    |||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| || || ||  | |    
T  6590162 atggggggtatggggaaaacaacccttgccaaagcaatttataatcaaattgggagcaaatttgagggaaggagctttcttctgaatataagagagttat 6590063  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||||| |||||||||| |||||    
T  6590062 gggagacagatactaatcaagtttctctacagcaaaagatacttgatgatgtttacaaaacattgacattcaagatacgtgatctagaatcaggcaaaaa 6589963  T
Q  201 tat 203  Q
    |||    
T  6589962 tat 6589960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 6725772 - 6725977
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    |||||||||| ||| |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||  || | || || |||||| |||    
T  6725772 atggggggtacgggtaaaacaacccttgccaaagccatttataatcaaattggtagcaaatttgagggaaggagctttgttctaaatatcagggaatttt 6725871  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| ||  |||| |||| |||||||||||||||| || |||||  ||||||||||||| || | |||||||| |||||||| |||||||||||||||||    
T  6725872 gggagacaaataccaatctagtttctctacagcaaaaggtactttgtgatgtttacaaaacattaacattcaagatacgtgacatagaatcagggaaaaa 6725971  T
Q  201 tatatt 206  Q
    ||||||    
T  6725972 tatatt 6725977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 6713653 - 6713811
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    ||||||||  |||| |||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||| ||| | ||||||||||||||||    
T  6713653 atggggggcttgggcaaaacaacccttgccaaagccatttataatcaaattggtatcaaatttgagggaaggagctttcttctaaacattagggaagttt 6713752  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaa 159  Q
    |||| || ||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  6713753 gggagacagatactaatcaagtttctctacagcaacaaatactttgtgatgtttacaaa 6713811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6672497 - 6672700
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    |||||||||||||| || |||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| |||  || |||||| |||    
T  6672497 atggggggtatgggcaagacaaacattgccaaagccatttacaatcaaattgggagcaaatttgagggaaggagcttccttctgattataagggaatttt 6672596  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| ||   || ||||| ||||||||||||||||||| |||||  |||||| |||||| ||  ||||||||| |||||||| ||||||||| |||||||    
T  6672597 gggagacatgtattaatctagtttctctacagcaacaggtactttgtgatgtctacaaaacaacgacattcaagatacgtgacatagaatcaaggaaaaa 6672696  T
Q  201 tata 204  Q
    ||||    
T  6672697 tata 6672700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6500473 - 6500268
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    |||||||||| ||| || |||||| |||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||| || |||||  |||    
T  6500473 atggggggtacgggcaagacaaccattgccaaagccatttataatcaaattgggagcgaatttgagggtaggagcttccttctgaatataagggagtttt 6500374  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| || ||||||||||||||||| ||||||||| || | |||  ||||||||||||| ||   | |||||| |||||||| |||||||||||||||||    
T  6500373 gggaaacagatactaatcaagtttcactacagcaaaaggtgctttgtgatgtttacaaaacaacaaaattcaagatacgtgacatagaatcagggaaaaa 6500274  T
Q  201 tatatt 206  Q
     |||||    
T  6500273 catatt 6500268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 6750689 - 6750894
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    |||||||||| ||| ||||||||| |||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||| || | || |||||| |||    
T  6750689 atggggggtacgggtaaaacaaccattgccaaagccatttacaatgaaattgggagcaaatttgagggaaggagcttccttatggatataagggaatttt 6750788  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| ||  |||||||||||||||| |||||||||||  ||||   ||||||||||||| ||   | |||||| |||||||| |||||||||||||||||    
T  6750789 gggagacacatactaatcaagtttcactacagcaacaagtactctgtgatgtttacaaaacaacaaaattcaagatacgtgacatagaatcagggaaaaa 6750888  T
Q  201 tatatt 206  Q
     |||||    
T  6750889 catatt 6750894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 6756307 - 6756512
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    |||||||||||||| ||||||||| |||| ||||||||| ||||| ||||||| || |||||||||||||||||||||||| |||| || || ||  |||    
T  6756307 atggggggtatgggtaaaacaaccattgccaaagccatttataatgaaattggaagaaaatttgagggaaggagcttccttctgaatataagagagtttt 6756406  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| || ||||||||||||||||| ||||| |||||| ||||    |||| |||| || ||  ||||||||| |||||||| |||||||||||||||||    
T  6756407 gggagacagatactaatcaagtttcactacaacaacaggtactctgcgatgcttacgaaacaacgacattcaagatacgtgacatagaatcagggaaaaa 6756506  T
Q  201 tatatt 206  Q
    ||||||    
T  6756507 tatatt 6756512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6535777 - 6535572
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    ||||||||||| || ||||||||| |||| ||||||||| ||||| ||||||| ||||| ||||| |||| |||||||||| |||| || |||||| |||    
T  6535777 atggggggtataggcaaaacaaccattgccaaagccatttataatgaaattggtagcaagtttgatggaaagagcttccttctgaatataagggaatttt 6535678  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| || | ||||||||||||||| |||||||||||  |||||  ||||||||||||| ||    ||||||| |||||||| || ||||||||||||||    
T  6535677 gggagacaggtactaatcaagtttcactacagcaacaagtactttgtgatgtttacaaaacaacttcattcaagatacgtgacattgaatcagggaaaaa 6535578  T
Q  201 tatatt 206  Q
    ||||||    
T  6535577 tatatt 6535572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 6648909 - 6649098
Alignment:
Q  13 ggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagtttgggacacggata 112  Q
    |||||||| ||| |||| ||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||| || || ||| ||||||| ||  |||    
T  6648909 ggaaaaactaccattgccaaagccatttataatcaaattgggaacaaatttgaggggaggagcttccttctgaatataagagaattttgggagacaaata 6649008  T
Q  113 ctaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaata 202  Q
     ||||| |||||||||||| |||||  | |||  ||||||||||||| |   ||||||||| |||||||| |||||||||||||||||||    
T  6649009 ttaatctagtttctctacaacaacaacttctttgtgatgtttacaaaactacgacattcaagatacgtgacatagaatcagggaaaaata 6649098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 6624554 - 6624349
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    ||||||||| |||| ||||||||| |||| ||||| ||| |||||||||||||||| ||||| || ||| ||||||| |||||||| || || ||| |||    
T  6624554 atggggggtgtgggtaaaacaaccattgccaaagcgatttataatcaaattgggagaaaattcgatggacggagctttcttttgaatataagagaatttt 6624455  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    | || || ||| | ||||| |||||||| || ||||| ||||||  ||||||||||||| ||  | ||||||| ||||| ||||| ||||||||||||||    
T  6624454 gcgagacagatgccaatcatgtttctctgcaacaacaaatactttgtgatgtttacaaaacaacggcattcaagatacgcgatatcgaatcagggaaaaa 6624355  T
Q  201 tatatt 206  Q
    ||||||    
T  6624354 tatatt 6624349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 6548024 - 6547827
Alignment:
Q  5 ggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagtttggga 104  Q
    |||| ||||| ||||||||| | || ||| ||||| ||||| ||||||| ||||| ||||| |||| |||||||||| |||| || |||||| |||||||    
T  6548024 ggggaatgggcaaaacaaccatagccaaatccatttataatgaaattggtagcaagtttgacggaaagagcttccttctgaatataagggaattttggga 6547925  T
Q  105 cacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaata 202  Q
     || | ||||||||||||||| |||||||||||  |||||  ||||||||||||| ||    ||||||| |||||||| || ||||||||||||||||    
T  6547924 gacaggtactaatcaagtttcactacagcaacaagtactttgtgatgtttacaaaacaacttcattcaagatacgtgacattgaatcagggaaaaata 6547827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 6834016 - 6834221
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    ||||||||||  || ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||    |  ||||| | |    
T  6834016 atggggggtacaggtaaaacaaccattgccaaagccatttataatcaaattgggagcaaatttgagggaatgagcttccttttgggtgtacgggaattct 6834115  T
Q  101 gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaa 200  Q
    |||| ||  ||||||||| |||||| || ||||||||| |||||  ||||||||||||| ||   |||| ||| |||| ||| || |||||||||||||     
T  6834116 gggagacacatactaatctagtttcactgcagcaacaggtactttgtgatgtttacaaaacaacaacatccaagatacatgacatcgaatcagggaaaat 6834215  T
Q  201 tatatt 206  Q
    ||||||    
T  6834216 tatatt 6834221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 8412728 - 8412908
Alignment:
Q  24 ccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagtttgggacacggatactaatcaagtt 123  Q
    |||||| ||||||||| ||||||||||||| || ||||||||||||| | ||||| || | || || |||||| ||||||| |   ||||||||| ||||    
T  8412728 ccttgccaaagccatttataatcaaattggtagaaaatttgagggaaagtgcttcgttctaaatataagggaattttgggagaaaaatactaatctagtt 8412827  T
Q  124 tctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaaatata 204  Q
    ||||||||||||| | |||||  |||| |||||||| || |||||| ||| |||| ||| |||| ||||||||||| ||||    
T  8412828 tctctacagcaactggtactttgtgatttttacaaaacattgacatacaagatacatgacatagtatcagggaaaagtata 8412908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 12018 - 11812
Alignment:
Q  1 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018 atggggggtatgggaaaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagttt 11919  T
Q  101 -gggacacggatactaatcaagtttctctacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaa 199  Q
     ||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11918 ggggacacagatactaatcaagtttgtgtacagcaacagatacttcatgatgtttacaaagcactgacattcaaaatacgtgatatagaatcagggaaaa 11819  T
Q  200 atatatt 206  Q
    |||||||    
T  11818 atatatt 11812  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 5134028 - 5133940
Alignment:
Q  16 aaaacaacccttgctaaagccattcataatcaaattgggagcaaatttgagggaaggagcttccttttgaacattagggaagtttggga 104  Q
    ||||||||| |||| ||||||||| | ||| |||||||  || | ||||| || ||||||||||||   || |||||||||||||||||    
T  5134028 aaaacaaccattgcgaaagccatttacaataaaattggccgcgattttgaaggtaggagcttccttgcaaatattagggaagtttggga 5133940  T

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