View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_low_6 (Length: 367)
Name: NF6719_low_6
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 36043615 - 36043697
Alignment:
| Q |
261 |
tatagagaccgtttaattaacccaatgttttataccttaatatgctatattggttttgaaatggacaattttctgtgtgaagt |
343 |
Q |
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| T |
36043615 |
tatagagaccgtttaattaacccaatattttataccttaatatgctatattggttttgaaatggacaattttctgtgtgaagt |
36043697 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 36043543 - 36043581
Alignment:
| Q |
20 |
caattatatttcaggattaattaattaaataaatgatcc |
58 |
Q |
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| T |
36043543 |
caattatatttcaggattaattaattaaataaatgatcc |
36043581 |
T |
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