View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6719_low_7 (Length: 361)
Name: NF6719_low_7
Description: NF6719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6719_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 5028063 - 5028411
Alignment:
| Q |
16 |
acatcaacgcagaattgaatggaaaggcaagacctattattcttatgctgctcaaatctcgatgaatgatatcagactcgtcatcatattatatttaaga |
115 |
Q |
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| T |
5028063 |
acatcaacgcagaattgaatggaaaggaaagacctattattcttatgctgctcaaatctcgatgaatgatatcagcgtcttcatcatattatatttaaga |
5028162 |
T |
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| Q |
116 |
aactgaacatcttttggacga---------------------taattatgttctctctatagttctctttctcccatattgcaagtttgcagcactatca |
194 |
Q |
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| T |
5028163 |
aactggacatcttttggacgagcatgttcctctcattatcaataattatgttctctctatagttctctttctcccatattgcaagtttgcaacactatca |
5028262 |
T |
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| Q |
195 |
aaacacacaaagatagcaaatgttagttttaacacacaatactatatctttatgattaatgaagagttagattttagccaaaagtatacaatctacaaga |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5028263 |
aaacacacaaagatagcaaatgttagttttaacacacaatactatatctttatgattaatgaagagttggattttagccaaaagtatacaatctacaaga |
5028362 |
T |
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| Q |
295 |
ttttctatataaagagaatagtgcacccccactcctgtgaacttgaatg |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5028363 |
ttttctatataaagagaatagtgcacccccactcctgtgaacttgaatg |
5028411 |
T |
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