View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_high_15 (Length: 309)
Name: NF6722_high_15
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 3219022 - 3219300
Alignment:
| Q |
12 |
gaaaaggcaaatagaatataccatggtctaatgcgcataacatctgttctgggcggcgtagatggtaagcggtttaagtgttcaataactgtatgcacat |
111 |
Q |
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| T |
3219022 |
gaaaaggcaaatagaatataccatcgtctaatgcgcataacatctgttctgggcagcgtagatggtaagcggtttaagtgttcaataactgtatgcacat |
3219121 |
T |
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| Q |
112 |
gagaccaattctgacaaggttcaacaataatgagaaacaggactactgtagttcaaatcatgggaaaagtcaattttttgcaataatttaaacaaacaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219122 |
gagaccaattctgacaaggttcaacaataatgagaaacaggactactgtagttcaaatcatgggaaaagtcaattttttgcaataatttaaacaaacaat |
3219221 |
T |
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| Q |
212 |
gctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaaacattcactttgtcaacttcatac |
290 |
Q |
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| T |
3219222 |
gctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaaacattcactttgtcaacttcatac |
3219300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 15986658 - 15986385
Alignment:
| Q |
12 |
gaaaaggcaaatagaatataccatggtctaatgcgcataacatctgttctgggcggcgtagatggtaagcggtttaagtgttcaataactgtatgcacat |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |
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| T |
15986658 |
gaaaagccaaatagaatataccatggtctaatgcgcataacatctgttctgggcggcgtagatggtaagcggttcaagtgttcaataactggacgcacat |
15986559 |
T |
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| Q |
112 |
gagaccaattctgacaaggttcaacaataatgagaaacaggactactgtagttcaaatcatgggaaaagtcaattttttgcaataatttaaacaaacaat |
211 |
Q |
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| T |
15986558 |
gagaccaattctgacaagtttcaacaataatgagaaactgg-ctactgtagttcaaatcatgggtaaagtcaattttctgcaataatttaaacaaagaat |
15986460 |
T |
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| Q |
212 |
gctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaaacattcactttgtcaacttc |
286 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
15986459 |
gctaacctgcattgtcattacatctgcatgatcaataataagaacctgcttcaaaacatacactctgtcaacttc |
15986385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 284
Target Start/End: Original strand, 23727396 - 23727603
Alignment:
| Q |
81 |
cggtttaagtgttcaataactgtatgcacatgagaccaattctgacaaggttcaacaataatgagaaacaggactact---gtagttcaaatcatgggaa |
177 |
Q |
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|||||||| |||| ||||| |||| ||||||||||||| |||||||| |||||||||||||||||||| | | | || |||||||||||||| | |
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| T |
23727396 |
cggtttaactgttgaataatggtattaacatgagaccaatcctgacaagtttcaacaataatgagaaacacaattcatagcgtcgttcaaatcatgggta |
23727495 |
T |
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| Q |
178 |
aagtcaattttttgcaataatttaaacaaacaatgctaacctgcattgccattacatctgcatgatcaataataagaacctgcttaaaa-acattcactt |
276 |
Q |
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|||||||||| ||||||||||||||||| | ||| | |||||||||||| |||| |||||| ||||||||||| |||| ||| |||||| |||| |||| |
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| T |
23727496 |
aagtcaatttgttgcaataatttaaacatataatacaaacctgcattgctattatatctgcgtgatcaataatgagaatctggttaaaagacatacactc |
23727595 |
T |
|
| Q |
277 |
tgtcaact |
284 |
Q |
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|||||||| |
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| T |
23727596 |
tgtcaact |
23727603 |
T |
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