View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6722_high_23 (Length: 257)
Name: NF6722_high_23
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 41602767 - 41602535
Alignment:
| Q |
5 |
tttcttctctttcttttttcacctacacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaatttcaatggta |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41602767 |
tttcttctctttcttttttcaactacacatacaactttaatggagtaaaatcaatcaaataacccttcaatatgtgattttaaagtaaatttcaatggta |
41602668 |
T |
|
| Q |
105 |
ttaggtttgaaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcaccgcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41602667 |
ttaggtttgaaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcaccgcc |
41602568 |
T |
|
| Q |
205 |
gcgtcggagaacccaatcagctctcagccacac |
237 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
41602567 |
gcgtcggagaacccaatcagctctcagacacac |
41602535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 9470448 - 9470677
Alignment:
| Q |
8 |
cttctctttcttttttcacctacacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaatttcaatggtatta |
107 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
9470448 |
cttctctttctttttttaactacacatacaactttaatggagtaaaatcaatcaaataacccttcaatctttgattttaaagcaaatttcaatggtatta |
9470547 |
T |
|
| Q |
108 |
ggtttgaaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcaccgccgcg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9470548 |
ggtttgaaaatttcaattttatatttgtaggaagaaaaggatagtccagtctttcaagatttaacacaaatcaacaaaacttcatcctgtcactgccgcg |
9470647 |
T |
|
| Q |
208 |
tcggagaacccaatcagctctcagccacac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9470648 |
tcggagaacccaatcagctctcagccacac |
9470677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 53721910 - 53721996
Alignment:
| Q |
11 |
ctctttctttttt-cacctacacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
96 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
53721910 |
ctctttcttttttgcaacaacacatacaactttaatggagcaaaatcaatcaaataacccttcaatctatgattttaaagcaaattt |
53721996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 7171988 - 7171921
Alignment:
| Q |
29 |
acacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
96 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
7171988 |
acacatacaactttaatggagcaaaaccaatcaaataacccttcaatatgtgattttaaagcaaattt |
7171921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 9206725 - 9206658
Alignment:
| Q |
29 |
acacatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
96 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
9206725 |
acacatgcaactttaatggagcaaaatcaataaaataacccttcaatatgtgattttaaagcaaattt |
9206658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 42189296 - 42189361
Alignment:
| Q |
31 |
acatacaactttaatggagtgaaatcaatcaaataacccttcaatctgtgattttaaagtaaattt |
96 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
42189296 |
acatgcaactttaatggaacaaaaccaatcaaataacccttcaatctatgaatttaaagcaaattt |
42189361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 9998910 - 9998972
Alignment:
| Q |
174 |
caaatcaacaaaacttcatcctgtcaccgccgcgtcggagaacccaatcagctctcagccacac |
237 |
Q |
| |
|
||||||||||||||| ||||| ||| | |||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
9998910 |
caaatcaacaaaactccatcccgtcgc-gccgcgtcggagaacctaatcatccctcagccacac |
9998972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University