View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_high_3 (Length: 632)
Name: NF6722_high_3
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 42937012 - 42936456
Alignment:
| Q |
1 |
tcttatatctcaacttccattatttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacgagattg |
100 |
Q |
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| T |
42937012 |
tcttatatctcaacttccattatttccatggctaccaacatagcagaaagagtgcaatatccattagactcttcctcctataaaatcgtcgacgagattg |
42936913 |
T |
|
| Q |
101 |
gcgccggtaacagcgccgtcgtctacaaagcaatctgcatccctataaactccacaccagtagctatcaaatccatagacttggatcgttcgcgccccga |
200 |
Q |
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| T |
42936912 |
gcgccggtaacagcgccgtcgtctacaaagcaatctgcatccctataaactccacaccagtagctatcaaatccatagacttggatcgttcgcgccccga |
42936813 |
T |
|
| Q |
201 |
ccttgacgatgttagacgtgaagcaaagacattatcacttctttcccaccccaacatcctcaaagctcactgttctttcaccgttgacaaccgtctttgg |
300 |
Q |
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| T |
42936812 |
ccttgacgatgttagacgtgaagcaaagacattatcacttctttcccaccccaacatcctcaaagctcactgttctttcaccgttgacaaccgtctttgg |
42936713 |
T |
|
| Q |
301 |
gtggttatgccattcatggctggaggttcattgcaatccataatctctcactctttccaaaacggcttaacagaacaatccatagctgttattctcaaag |
400 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936712 |
gtggttatgccattcatggctggaggttcattacaatccattatctctcactctttccaaaacggcttaacagaacaatccatagctgttattctcaaag |
42936613 |
T |
|
| Q |
401 |
acactctcaatgctctttcttaccttcatggacaaggacatcttcatagagatatcaaatccggtaacatccttgttgactcaaatggattagtgaaact |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42936612 |
acactctcaatgctctttcttaccttcatggacaaggacatcttcatagagatatcaaatctggtaacatccttgttgactcaaatggattagtgaaact |
42936513 |
T |
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| Q |
501 |
tgcagattttggtgtttctgcttccatttatgaatcaaacaactctgtaggagcatg |
557 |
Q |
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| T |
42936512 |
tgcagattttggtgtttctgcttccatttatgaatcaaacaactctgtaggagcatg |
42936456 |
T |
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