View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6722_low_10 (Length: 473)

Name: NF6722_low_10
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6722_low_10
NF6722_low_10
[»] chr5 (13 HSPs)
chr5 (20-455)||(36394372-36394814)
chr5 (20-136)||(21947144-21947256)
chr5 (20-136)||(20507136-20507252)
chr5 (20-111)||(31813384-31813477)
chr5 (182-281)||(1494525-1494624)
chr5 (175-276)||(10735259-10735360)
chr5 (75-161)||(33270983-33271063)
chr5 (222-284)||(31813220-31813282)
chr5 (41-111)||(19281996-19282070)
chr5 (175-270)||(33270839-33270934)
chr5 (213-281)||(21946833-21946903)
chr5 (227-284)||(7015020-7015077)
chr5 (19-63)||(10735007-10735051)
[»] chr4 (13 HSPs)
chr4 (20-111)||(55441342-55441435)
chr4 (175-273)||(11087563-11087661)
chr4 (201-284)||(12571444-12571527)
chr4 (46-111)||(35801998-35802065)
chr4 (38-107)||(39163040-39163111)
chr4 (175-251)||(24411931-24412007)
chr4 (38-107)||(54349367-54349438)
chr4 (222-284)||(35801834-35801896)
chr4 (222-284)||(39162872-39162934)
chr4 (222-284)||(53019665-53019727)
chr4 (222-284)||(54349544-54349606)
chr4 (223-284)||(24778172-24778233)
chr4 (113-169)||(24412023-24412079)
[»] chr3 (5 HSPs)
chr3 (20-111)||(49237806-49237899)
chr3 (176-284)||(25484736-25484844)
chr3 (112-304)||(36518853-36519060)
chr3 (175-234)||(36801966-36802025)
chr3 (116-169)||(36802041-36802094)
[»] chr1 (12 HSPs)
chr1 (20-111)||(46886996-46887089)
chr1 (20-111)||(46889017-46889110)
chr1 (176-304)||(16802979-16803112)
chr1 (176-284)||(26049348-26049456)
chr1 (38-111)||(30786441-30786516)
chr1 (205-284)||(26051447-26051526)
chr1 (222-284)||(46887191-46887253)
chr1 (222-284)||(46889212-46889274)
chr1 (175-248)||(36729470-36729543)
chr1 (41-85)||(26049582-26049626)
chr1 (223-270)||(20060071-20060118)
chr1 (112-169)||(26049473-26049530)
[»] scaffold0007 (2 HSPs)
scaffold0007 (30-165)||(198467-198601)
scaffold0007 (30-161)||(197887-198014)
[»] chr7 (1 HSPs)
chr7 (38-111)||(4588507-4588582)
[»] scaffold0316 (1 HSPs)
scaffold0316 (38-111)||(10885-10960)
[»] chr8 (7 HSPs)
chr8 (201-284)||(12230999-12231082)
chr8 (182-284)||(410936-411038)
chr8 (223-284)||(33545635-33545696)
chr8 (113-165)||(411110-411162)
chr8 (241-284)||(24800423-24800466)
chr8 (123-284)||(375436-375607)
chr8 (223-284)||(33327593-33327656)
[»] chr6 (2 HSPs)
chr6 (175-285)||(240909-241018)
chr6 (20-63)||(241189-241232)
[»] chr2 (2 HSPs)
chr2 (222-284)||(11105433-11105495)
chr2 (222-284)||(36558613-36558675)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 455
Target Start/End: Complemental strand, 36394814 - 36394372
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatatata----gactttgcagtaaaaactaccaataatttcctatacttagagccctacccct 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    ||| |||||||||||||||||||||| |||||||| |||||| | |||||||    
T  36394814 aaaatgggatccaaccctttgttcttattacaaactgatatatatatagaccttgcagtaaaaactaccaataacttcctataattagagtcatacccct 36394715  T
Q  116 acacttggcataattacaagatactagaaaataatttccatgcactccaattgttgtaactccttatctttggtcgaaaatcatgtgcatgcaatacatt 215  Q
    ||| ||||||||||||||| | |||||||||||| || ||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  36394714 acagttggcataattacaaaacactagaaaataacttgcatgcactccaattgt---aactccttatctttggtcaaaaatcatgtgcatgcaatacatt 36394618  T
Q  216 aaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacacttt-----gtgtcgaaatattttattttttagaat 310  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||      |||| |||||||||| ||||||| ||    
T  36394617 aaaacatttggtcgaaaatgcagtatatcgaagtctgtatgctcttgatcgaaatccctttacactttataacatgtcaaaatattttaatttttagtat 36394518  T
Q  311 taacaatagttgacattgaattatgcccatgttagcaagtagacatagcacagacattaactgctctagatctgattcatttcctaccccccgatcttta 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36394517 taacaatagttgacattgaattatgcccatgttagcaagtagacatagcacagacattaactgctctagatctgcttcatttcctaccccccgatcttta 36394418  T
Q  411 ctactcaaaatg-atcggaaaaagactatgtacctcaccacattaa 455  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  36394417 ctactcaaaatgaatcggaaaaagactatgtacctcaccacattaa 36394372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 21947256 - 21947144
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagccctacccctac 117  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||||||||||||||      ||||    
T  21947256 aaaataggatccaaccctttcttcttattacaaactgatatatatagactttgcagaaaaaactaccaataacttcctatacttagagcc------ctac 21947163  T
Q  118 acttggcataattacaaga 136  Q
    |||||||||||||||||||    
T  21947162 acttggcataattacaaga 21947144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 20507252 - 20507136
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatatata------gactttgcagtaaaaactaccaataatttcctatacttagagccctaccc 113  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||      |||||||||| ||||||||||||||| |||||||||||||||||          
T  20507252 aaaataggatccaaccctttgttcttattacaaactgatatatatatatagactttgcaggaaaaactaccaataacttcctatacttagagcc------ 20507159  T
Q  114 ctacacttggcataattacaaga 136  Q
    |||||||||||||||||||||||    
T  20507158 ctacacttggcataattacaaga 20507136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 31813477 - 31813384
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgata--tatagactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| ||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||||||||||| |||||  ||| ||||||||||    
T  31813477 aaaataggatccaaccctttgttcttattacaaactgatatatatagactttgcaggaaaaactaccaataacttccttcactaagagccctac 31813384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 1494624 - 1494525
Alignment:
Q  182 tctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacact 281  Q
    |||||| ||||||| | | ||||||||| ||||||||| | |||||||||||| |||||||||||| |||||||||||||  | ||||||||||| ||||    
T  1494624 tctttgatcgaaaaccttatgcatgcaacacattaaaacacttggtcgaaaatacagtatgtcgaaatctgtatgctcttagtagaaatccctttgcact 1494525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 10735259 - 10735360
Alignment:
Q  175 ctccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccct 274  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||| ||  |||| |||| ||| ||||||| |||||| |||| ||||| |||||||| ||    
T  10735259 ctccttatctttggtcgaaaaccatatgcatgcaacacattaaagtacatggttgaaattgcggtatgtcaaagtctttatgttcttggtcgaaatctct 10735358  T
Q  275 tt 276  Q
    ||    
T  10735359 tt 10735360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 33271063 - 33270983
Alignment:
Q  75 aaaaactaccaataatttcctatacttagagccctacccctacacttggcataattacaagatactagaaaataatttccatgcact 161  Q
    ||||||||||||||| ||||||||||||||||| |||      ||||||||||||||||||| |||||||||||| || ||||||||    
T  33271063 aaaaactaccaataacttcctatacttagagccatac------acttggcataattacaagacactagaaaataactttcatgcact 33270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 31813282 - 31813220
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| |||| |||||||||||||||||||| |||||||| |||| |||||||    
T  31813282 tttggtcgaaattgcggtatatcgaagtctgtatgctcttggtcgaaatctctttgcactttg 31813220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 19281996 - 19282070
Alignment:
Q  41 ttcttattacaaactgatatata----gactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    |||||||||||||||||||||||    ||| || ||  ||||||||||||||| |||||||||||||||||||||    
T  19281996 ttcttattacaaactgatatatatatagaccttacatgaaaaactaccaataacttcctatacttagagccctac 19282070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 33270934 - 33270839
Alignment:
Q  175 ctccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaat 270  Q
    |||||| |||||||||||||| ||| ||||||||| |||||||   | |||||||||| ||| || ||||||||| ||| || ||||| |||||||    
T  33270934 ctccttgtctttggtcgaaaaccatatgcatgcaacacattaagtcacttggtcgaaattgcggtgtgtcgaagtatgtgtgttcttggtcgaaat 33270839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 21946903 - 21946833
Alignment:
Q  213 attaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctct--tgatcgaaatccctttacact 281  Q
    ||||||| | |||||| ||||||||| ||||| |||| ||||||||||  || ||||||||||||||||||    
T  21946903 attaaaacaattggtcaaaaatgcagcatgtccaagtatgtatgctctcttggtcgaaatccctttacact 21946833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 7015020 - 7015077
Alignment:
Q  227 tcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    |||||| ||| || |||||||||||||||| | ||| || ||||||||||||||||||    
T  7015020 tcgaaattgcggtgtgtcgaagtctgtatgttattggtcaaaatccctttacactttg 7015077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 10735007 - 10735051
Alignment:
Q  19 aaaaatgggatccaacactttgttcttattacaaactgatatata 63  Q
    |||||| |||||||||  ||||||||||||| |||||||||||||    
T  10735007 aaaaataggatccaaccttttgttcttattataaactgatatata 10735051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 55441435 - 55441342
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  55441435 aaaataggatccaaccctttcttcttattacaaactgatatatatagactttgcagaaaaaactaccaataacttcctatacttagagccctac 55441342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 11087563 - 11087661
Alignment:
Q  175 ctccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccc 273  Q
    |||||||||| | |||||||| ||| ||||||||| ||||||||| | |||||||||||||||| |||| ||||||| |||||||||  ||||||||||    
T  11087563 ctccttatctatagtcgaaaaccatatgcatgcaacacattaaaacacttggtcgaaaatgcagaatgttgaagtctatatgctcttagtcgaaatccc 11087661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 12571444 - 12571527
Alignment:
Q  201 tgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    |||||| ||||||||||  || ||  |||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||    
T  12571444 tgcatgaaatacattaagttactttatcgaaaatgcagcatgtcgaagtctgtatgctcttggtcgaaatcactttgcactttg 12571527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 35802065 - 35801998
Alignment:
Q  46 attacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||||||||||||||||  ||||||| || |||||||| |||||| |||||||||||||||||||||    
T  35802065 attacaaactgatatatatagactttgtagaaaaaactatcaataacttcctatacttagagccctac 35801998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 39163111 - 39163040
Alignment:
Q  38 ttgttcttattacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagcc 107  Q
    ||||| ||||||||||||||||||||  ||||||| || ||||||||||||||| ||| |||||||||||||    
T  39163111 ttgttattattacaaactgatatatatagactttgtagaaaaaactaccaataacttcgtatacttagagcc 39163040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 24412007 - 24411931
Alignment:
Q  175 ctccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtct 251  Q
    |||||||||||||||| |||| ||| ||||||||| ||||||||  | ||| |||||| ||| ||||||||||||||    
T  24412007 ctccttatctttggtcaaaaaccatatgcatgcaacacattaaatcacttgatcgaaattgcggtatgtcgaagtct 24411931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 54349367 - 54349438
Alignment:
Q  38 ttgttcttattacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagcc 107  Q
    ||||| ||||||||||||||||||||  ||| ||  || ||||||||||||||| |||||||||||||||||    
T  54349367 ttgttattattacaaactgatatatatagaccttatagaaaaaactaccaataacttcctatacttagagcc 54349438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 35801896 - 35801834
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || | |||||||||||||||||||| |||||||| |||| |||||||    
T  35801896 tttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttg 35801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 39162934 - 39162872
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || | |||||||||||||||||||| |||||||| |||| |||||||    
T  39162934 tttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttg 39162872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 53019727 - 53019665
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || |||||||||||||||| ||||| |||||||| |||| |||||||    
T  53019727 tttggtcgaaattgcggtgtgtcgaagtctgtatggtcttggtcgaaatctctttgcactttg 53019665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 54349544 - 54349606
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || | ||||||||||||| |||||| |||||||| |||| |||||||    
T  54349544 tttggtcgaaattgcggtgtatcgaagtctgtatactcttggtcgaaatctctttgcactttg 54349606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 24778172 - 24778233
Alignment:
Q  223 ttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    |||||||||| || ||| |||||||||||||||| | ||  ||||||||||||| |||||||    
T  24778172 ttggtcgaaattgtagtgtgtcgaagtctgtatgttattagtcgaaatcccttttcactttg 24778233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 24412079 - 24412023
Alignment:
Q  113 cctacacttggcataattacaagatactagaaaataatttccatgcactccaattgt 169  Q
    |||||||||| ||||||||||||  | | ||||||||||||||| || |||||||||    
T  24412079 cctacacttgacataattacaaggcattggaaaataatttccatccattccaattgt 24412023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 49237899 - 49237806
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| |||| |||| |||| ||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  49237899 aaaataggattcaacccttttttcttattacaaactgatacatattgactttgcagtaaaaactaccaataacttcctatacttagagccctac 49237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 25484736 - 25484844
Alignment:
Q  176 tccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctt 275  Q
    |||||||||||||| ||||| ||| |||||| || ||| ||||  | ||| |||||| ||| |||| |||||||||||||| ||||| |||||||  |||    
T  25484736 tccttatctttggttgaaaaccatatgcatgaaacacaataaagcacttgatcgaaattgcggtatatcgaagtctgtatgttcttggtcgaaatttctt 25484835  T
Q  276 tacactttg 284  Q
    |||||||||    
T  25484836 tacactttg 25484844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 304
Target Start/End: Original strand, 36518853 - 36519060
Alignment:
Q  112 ccctacacttggcataattacaagatactagaaaataatttccatgcactccaattgt-------tgtaa---ctccttatctttggtcgaaaatcatgt 201  Q
    |||||||||| |||||||||||||| || ||||||||| ||  |||||||||||||||       | | |   |||||||||||||| ||||||     |    
T  36518853 ccctacacttagcataattacaagacaccagaaaataacttatatgcactccaattgtaagttcatatcatttctccttatctttggccgaaaacagaat 36518952  T
Q  202 gcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg-----tgtcgaaatatt 296  Q
    |||||||| ||||||||  | |||||| ||||||  ||||||| |||| || ||||||||| ||||||||| ||| |||||||     |||| |||||||    
T  36518953 gcatgcaacacattaaatcacttggtcaaaaatgtggtatgtcaaagtttgaatgctcttggtcgaaatccatttgcactttgcagcatgtcaaaatatt 36519052  T
Q  297 ttattttt 304  Q
    ||||||||    
T  36519053 ttattttt 36519060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 36802025 - 36801966
Alignment:
Q  175 ctccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaat 234  Q
    |||||||||||| |||||||| ||| ||||||||| ||||||||  | ||||||||||||    
T  36802025 ctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcacttggtcgaaaat 36801966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 36802094 - 36802041
Alignment:
Q  116 acacttggcataattacaagatactagaaaataatttccatgcactccaattgt 169  Q
    ||||||||||||||||||||| |  ||||||||| ||  |||||||||||||||    
T  36802094 acacttggcataattacaagacagcagaaaataacttttatgcactccaattgt 36802041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 46886996 - 46887089
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatat--atagactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| ||||||||| |||| ||||||||||||||||||||  |||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  46886996 aaaataggatccaaccctttcttcttattacaaactgatatatatagactttgaagaaaaaactaccaataacttcctatacttagagccctac 46887089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 46889017 - 46889110
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatat--atagactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| ||||||||| |||| ||||||||||||||||||||  |||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  46889017 aaaataggatccaactctttcttcttattacaaactgatatatatagactttgaagaaaaaactaccaataacttcctatacttagagccctac 46889110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 16802979 - 16803112
Alignment:
Q  176 tccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctt 275  Q
    ||||||||||| |||||||| ||| ||||||||| | ||||||  | ||||||||||||   ||||||| ||||||||||||||||| |||||||| |||    
T  16802979 tccttatctttagtcgaaaaccatatgcatgcaacatattaaatcacttggtcgaaaatatggtatgtcaaagtctgtatgctcttggtcgaaatcactt 16803078  T
Q  276 tacactttg-----tgtcgaaatattttattttt 304  Q
    | |||||||     ||||||||||||||||||||    
T  16803079 tgcactttgcagcatgtcgaaatattttattttt 16803112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 26049456 - 26049348
Alignment:
Q  176 tccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctt 275  Q
    ||||||||| |||||||||| ||| ||||||||| ||||||||  | |||||||||| ||| |||||||||||| |||||||||||| |||||||  |||    
T  26049456 tccttatctctggtcgaaaaccatatgcatgcaacacattaaatcacttggtcgaaattgcggtatgtcgaagtttgtatgctcttggtcgaaatatctt 26049357  T
Q  276 tacactttg 284  Q
    | |||||||    
T  26049356 tgcactttg 26049348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 30786441 - 30786516
Alignment:
Q  38 ttgttcttattacaaactgatat--atagactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| |||||||||||||||||  |||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  30786441 ttgttattattacaaactgatatatatagactttgaagaaaaaactaccaataacttcctatacttagagccctac 30786516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 26051526 - 26051447
Alignment:
Q  205 tgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||| ||||||||  | |||||||||| ||||||||||||||||||||||||||||| ||||||||  ||| |||||||    
T  26051526 tgcaacacattaaatcacttggtcgaaattgcagtatgtcgaagtctgtatgctcttggtcgaaatctttttgcactttg 26051447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 46887191 - 46887253
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || | |||||||||||||||||||| |||||||| |||| |||||||    
T  46887191 tttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttg 46887253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 46889212 - 46889274
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || | |||||||||||||||||||| |||||||| |||| |||||||    
T  46889212 tttggtcgaaattgcggtgtatcgaagtctgtatgctcttggtcgaaatctctttgcactttg 46889274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 36729543 - 36729470
Alignment:
Q  175 ctccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaag 248  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||  || ||||| |||  ||| |||||||||||    
T  36729543 ctccttatctttggtcgaaaaccatatgcatgcaacacattaagttacttggttgaagttgcggtatgtcgaag 36729470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 26049626 - 26049582
Alignment:
Q  41 ttcttattacaaactgatatatagactttgcagtaaaaactacca 85  Q
    |||||||||||||||||||||||||| ||| || |||||||||||    
T  26049626 ttcttattacaaactgatatatagaccttgtagaaaaaactacca 26049582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 20060071 - 20060118
Alignment:
Q  223 ttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaat 270  Q
    |||||||||  ||| ||||||| |||||||||||||||||||||||||    
T  20060071 ttggtcgaatttgcggtatgtcaaagtctgtatgctcttgatcgaaat 20060118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 26049530 - 26049473
Alignment:
Q  112 ccctacacttggcataattacaagatactagaaaataatttccatgcactccaattgt 169  Q
    ||||||||||| ||||||| |||||  |||||||| || || ||||||||||||||||    
T  26049530 ccctacacttgacataattgcaagaccctagaaaacaactttcatgcactccaattgt 26049473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 198601 - 198467
Alignment:
Q  30 ccaacactttgttcttattacaaactgatatata------gactttgcagtaaaaactaccaataatttcctatacttagagccctacccctacacttgg 123  Q
    ||||| ||||||||||||||||||||||||||||      ||| || ||  ||||||||||||||| ||||||||||||||||        |||||||||    
T  198601 ccaaccctttgttcttattacaaactgatatatatatatagaccttccatgaaaaactaccaataacttcctatacttagagcg-------tacacttgg 198509  T
Q  124 cataattacaagatactagaaaataatttccatgcactccaa 165  Q
    ||||||||||||| |||||||||||| || ||||||||||||    
T  198508 cataattacaagacactagaaaataactttcatgcactccaa 198467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 198014 - 197887
Alignment:
Q  30 ccaacactttgttcttattacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagccctacccctacacttggcata 127  Q
    ||||| |||||||||||||||||||| |||||||  ||| |||||  ||||||||||| ||| ||| |||||||||||||      ||||||||||||||    
T  198014 ccaaccctttgttcttattacaaactaatatatatagaccttgcatgaaaaactaccattaacttcatatacttagagcc------ctacacttggcata 197921  T
Q  128 attacaagatactagaaaataatttccatgcact 161  Q
    ||| ||||| | |||||||||| || ||||||||    
T  197920 atttcaagacattagaaaataactttcatgcact 197887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 4588582 - 4588507
Alignment:
Q  38 ttgttcttattacaaactgatatata--gactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| ||||||||||||||||||||  ||||||| || ||||||||||||||| |||||||||||||||||||||    
T  4588582 ttgttattattacaaactgatatatatagactttgtagaaaaaactaccaataacttcctatacttagagccctac 4588507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 10885 - 10960
Alignment:
Q  38 ttgttcttattacaaactgatat--atagactttgcagtaaaaactaccaataatttcctatacttagagccctac 111  Q
    ||||| |||||||||||||||||  |||||||||| || |||||||||||| || |||||||||||||||||||||    
T  10885 ttgttattattacaaactgatatatatagactttgtagaaaaaactaccaacaacttcctatacttagagccctac 10960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 12231082 - 12230999
Alignment:
Q  201 tgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    |||||| |||| |||||| || || || |||||||||| ||||||||||||||||| ||||| |||||||| |||| |||||||    
T  12231082 tgcatgaaatatattaaattactttgttgaaaatgcagcatgtcgaagtctgtatgttcttggtcgaaatctctttgcactttg 12230999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 411038 - 410936
Alignment:
Q  182 tctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacact 281  Q
    |||||||||| ||| ||| ||||||||| ||||||||  | |||||||||||||  |||||||||||  | |||||||||||| ||||||  ||| ||||    
T  411038 tctttggtcgtaaaccatatgcatgcaacacattaaagcacttggtcgaaaatgtggtatgtcgaagcttatatgctcttgattgaaatctttttgcact 410939  T
Q  282 ttg 284  Q
    |||    
T  410938 ttg 410936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 33545696 - 33545635
Alignment:
Q  223 ttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||| || ||||||||||| |||| |||||||||||| ||||||||||||| |||||||    
T  33545696 ttggtcggaattgcagtatgtcaaagtttgtatgctcttggtcgaaatccctttgcactttg 33545635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 411162 - 411110
Alignment:
Q  113 cctacacttggcataattacaagatactagaaaataatttccatgcactccaa 165  Q
    |||||| ||||||||||||||||| |||||||||||| || ||||||||||||    
T  411162 cctacatttggcataattacaagacactagaaaataacttacatgcactccaa 411110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 24800466 - 24800423
Alignment:
Q  241 tgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  24800466 tgtcgaagtctgtatgttattgatcgaaatccctttacactttg 24800423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 284
Target Start/End: Complemental strand, 375607 - 375436
Alignment:
Q  123 gcataattacaagatactagaaaataatttccatgcactccaattg----------ttgtaactccttatctttggtcgaaaatcatgtgcatgcaatac 212  Q
    |||||||||||||| ||||||||| || ||||||||| ||||||||          || |   ||||||||| || ||||||| ||| |||||||||  |    
T  375607 gcataattacaagacactagaaaacaacttccatgcattccaattgtaacttcaaattatttatccttatctctgatcgaaaaccatatgcatgcaacgc 375508  T
Q  213 attaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||  | ||| |||||| ||| |||||||||| | ||||| |||||| |||||||| |||| |||||||    
T  375507 attaaatcacttgatcgaaattgcggtatgtcgaaatatgtatactcttggtcgaaatctctttgcactttg 375436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 33327656 - 33327593
Alignment:
Q  223 ttggtcgaaaatgcagtatgtcgaagtctgtat--gctcttgatcgaaatccctttacactttg 284  Q
    ||||| |||| ||| ||||||||||||||||||  | | ||||||||||||||||| |||||||    
T  33327656 ttggttgaaattgccgtatgtcgaagtctgtatatgttattgatcgaaatccctttgcactttg 33327593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 241018 - 240909
Alignment:
Q  175 ctccttatctttggtcgaaaatcatgtgcatgcaatacattaaaatatttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccct 274  Q
    ||||||||||||| | ||||| ||| |||||| || ||||||||    |||||  |||||||||||||| ||||| || ||||||||| | | |||||||    
T  241018 ctccttatctttgtttgaaaaccatatgcatgtaacacattaaagcccttggttaaaaatgcagtatgtagaagtttgcatgctcttggttg-aatccct 240920  T
Q  275 ttacactttgt 285  Q
    |||||||||||    
T  240919 ttacactttgt 240909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 241232 - 241189
Alignment:
Q  20 aaaatgggatccaacactttgttcttattacaaactgatatata 63  Q
    ||||| ||||||||| || |||||||||||||||||||||||||    
T  241232 aaaataggatccaaccctctgttcttattacaaactgatatata 241189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 11105433 - 11105495
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || ||||||||||||| || | ||| ||||||||||||| |||||||    
T  11105433 tttggtcgaaattgcggtgtgtcgaagtctgtctgttattggtcgaaatccctttgcactttg 11105495  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 36558675 - 36558613
Alignment:
Q  222 tttggtcgaaaatgcagtatgtcgaagtctgtatgctcttgatcgaaatccctttacactttg 284  Q
    ||||||||||| ||| || ||||||||||||| || | ||| ||||||||||||| |||||||    
T  36558675 tttggtcgaaattgcggtgtgtcgaagtctgtttgttattggtcgaaatccctttgcactttg 36558613  T

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