View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_11 (Length: 461)
Name: NF6722_low_11
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 23707603 - 23707766
Alignment:
| Q |
145 |
ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatc |
244 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |
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| T |
23707603 |
ctgcagctgtctttttaccctaaaatttgaacacagcgttactgaaattttgaagcaaattctaggagatttggaaccattaacaaacttcaactatatc |
23707702 |
T |
|
| Q |
245 |
accgactttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt |
308 |
Q |
| |
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|| | |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
23707703 |
actaaatttcactcatctattctatcaccgaccttgtccccatatcgtgttgcatgtttttttt |
23707766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 317 - 432
Target Start/End: Complemental strand, 23736045 - 23735930
Alignment:
| Q |
317 |
ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23736045 |
ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcaatccattt |
23735946 |
T |
|
| Q |
417 |
gatacattagcacttc |
432 |
Q |
| |
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|||||||||||||||| |
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| T |
23735945 |
gatacattagcacttc |
23735930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 23619074 - 23618961
Alignment:
| Q |
318 |
tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23619074 |
tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg |
23618975 |
T |
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| Q |
418 |
atacattagcactt |
431 |
Q |
| |
|
|||||||||||||| |
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| T |
23618974 |
atacattagcactt |
23618961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 318 - 431
Target Start/End: Complemental strand, 23650419 - 23650306
Alignment:
| Q |
318 |
tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23650419 |
tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg |
23650320 |
T |
|
| Q |
418 |
atacattagcactt |
431 |
Q |
| |
|
|||||||||||||| |
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| T |
23650319 |
atacattagcactt |
23650306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 23626472 - 23626574
Alignment:
| Q |
330 |
tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac |
429 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| || |
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| T |
23626472 |
tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac |
23626571 |
T |
|
| Q |
430 |
ttc |
432 |
Q |
| |
|
||| |
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|
| T |
23626572 |
ttc |
23626574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 330 - 432
Target Start/End: Original strand, 23708198 - 23708300
Alignment:
| Q |
330 |
tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac |
429 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| || |
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| T |
23708198 |
tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac |
23708297 |
T |
|
| Q |
430 |
ttc |
432 |
Q |
| |
|
||| |
|
|
| T |
23708298 |
ttc |
23708300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 23707388 - 23707505
Alignment:
| Q |
1 |
ttagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtccggtttgaaaaggccaatataaatagcatttttcttttgacttttg |
100 |
Q |
| |
|
||||||||||||| ||||| |||| || |||||||||| ||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||| |
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| T |
23707388 |
ttagtttgatctggcctcttctataccccaacaatgcctaagtttactaaggtcctgtttgaaaatgccaatataaatagca-ttttcttttgacgtttg |
23707486 |
T |
|
| Q |
101 |
caatgccattcgtgtcatc |
119 |
Q |
| |
|
||||||||||| ||||||| |
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| T |
23707487 |
caatgccattcctgtcatc |
23707505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 54140207 - 54140348
Alignment:
| Q |
158 |
tttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatcaccgactttcact |
257 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||| |
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|
| T |
54140207 |
tttaccctaaaatttgaacacaatgttactgaaattttgaagcaagttctagaagatttgaaaccattaacaaacctcaattctatcatggactttcact |
54140306 |
T |
|
| Q |
258 |
catctgttctatcaccgacctcatccccatatcgtgttgcat |
299 |
Q |
| |
|
||| | |||||||||||||||||||||||||| ||||||||| |
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|
| T |
54140307 |
catatattctatcaccgacctcatccccatattgtgttgcat |
54140348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 54139980 - 54140097
Alignment:
| Q |
1 |
ttagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtccggtttgaaaaggccaatataaatagcatttttcttttgacttttg |
100 |
Q |
| |
|
|||||||||| || ||||| ||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
54139980 |
ttagtttgatttggcctcttctattccccaacaatgcccaagtttactaaggtccggtttgaaattgccaatataaatagcattcttcttttgacttttg |
54140079 |
T |
|
| Q |
101 |
caatgccattcgtgtcat |
118 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
54140080 |
caatgccattcctgtcat |
54140097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 52807865 - 52807771
Alignment:
| Q |
145 |
ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaatt |
239 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
52807865 |
ctgcagctgtctttttaccctaaaatttgaacacaatgtcactgaaattttgaagcaagttctaggagatttgaaatcattaacaaacctcaatt |
52807771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 426
Target Start/End: Complemental strand, 52807127 - 52807019
Alignment:
| Q |
318 |
tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg |
417 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||||||||||||| |||| |||| |||||| ||||| | ||||||| |||||||||||| || |
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|
| T |
52807127 |
tgtgattttgaagctagaaacaatgtggtgactttgtgttgactgttagaaactagagcatgaatctatgaatgcagctcttgtgccttcattccatgtg |
52807028 |
T |
|
| Q |
418 |
atacattag |
426 |
Q |
| |
|
||||||||| |
|
|
| T |
52807027 |
atacattag |
52807019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 54141120 - 54141180
Alignment:
| Q |
318 |
tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcac |
378 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |
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|
| T |
54141120 |
tgtgatttgggatctagatacaatgtggtggctttgtgtcgactgttagacactagagcac |
54141180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 52807673 - 52807614
Alignment:
| Q |
249 |
actttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt |
308 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
52807673 |
actttcactcatgtattctctcaccgacctcgtccccatatcgtgttgcatgttcgtttt |
52807614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 52806979 - 52806927
Alignment:
| Q |
380 |
aatctaagaatgtatctcttgtcccttcattccatttgatacattagcacttc |
432 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
52806979 |
aatctatgaatgtacctcttgtgccttcattccatgtgatacattagtacttc |
52806927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 48431699 - 48431609
Alignment:
| Q |
29 |
caacaatgcccaaggttactaaggtcc--ggtttgaaaaggccaatataaatagcatttttcttttgacttttgcaatgccattcgtgtcatc |
119 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| | | |||||||||||||||| | |||||| ||||||||||||||| ||||||| |
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|
| T |
48431699 |
caacaatgcccaagtttactaaggtccttggtttgaaatg-ctgatataaatagcatttt-cgtttgacgtttgcaatgccattcctgtcatc |
48431609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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