View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_12 (Length: 452)
Name: NF6722_low_12
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 9945077 - 9945495
Alignment:
| Q |
18 |
ttaggtgtctttaattatacaattatctataaatttttaaatgcatttattacnnnnnnnnnaaatgtatcacttgttaatactctacttgtcccatcac |
117 |
Q |
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| T |
9945077 |
ttaggtgtctttaattatacaattatctataaatttttaaatgcatctattactttttttaaaaatgtatcacttgttaatactctccttgtcccatcaa |
9945176 |
T |
|
| Q |
118 |
aattcaactttagcatannnnnnnaataaaaaatctgatatctggtttaaataccgactaattcgaagggttcaatttcattgaccattatgcggacctt |
217 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||| |
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| T |
9945177 |
aattcaactttagcatatttttttaataaaaaatctggtatctggtttaaataccgactaatttgaagggttcaatttcaatgaccactctgcggacctt |
9945276 |
T |
|
| Q |
218 |
atttaaagtcaacgcaatgttctgtatgaacttgcccatcaaaaaacacatttcaatatctcaaacaaattacaccgataaatcaatccaaatgagttaa |
317 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
9945277 |
atttaaagtcaacgcattgatctgtatgaacttgcccatcaaaaaacacatttcaatatctcaaacaaattacaccgataaatcaacccaaatgagctaa |
9945376 |
T |
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| Q |
318 |
ttttcacatatactcctacacaattttgacaattaatattttcaatatccgtttgcaaaagattataaaagaatgatatttagaaaatatcatctagaca |
417 |
Q |
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| T |
9945377 |
ttttcacatatactcctacacaattttgacaattaatattttcaatatccatttgcaaaagattataaaagaatgatatttagaaaatatcatctagaca |
9945476 |
T |
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| Q |
418 |
aattgaacagttatatatt |
436 |
Q |
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| T |
9945477 |
aattgaacagttatatatt |
9945495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 23359817 - 23359774
Alignment:
| Q |
25 |
tctttaattatacaattatctataaatttttaaatgcatttatt |
68 |
Q |
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||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
23359817 |
tctttaactataaaattatctataaatttttaaatgtatttatt |
23359774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 13141555 - 13141523
Alignment:
| Q |
38 |
aattatctataaatttttaaatgcatttattac |
70 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
13141555 |
aattatcgataaatttttaaatgcatttattac |
13141523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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