View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_15 (Length: 396)
Name: NF6722_low_15
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 49785691 - 49785472
Alignment:
| Q |
42 |
ttaaatcacagttcaaccataaatgaattggggatgaggatttggcaatcttgttcattttactattaaaagaaagtttttcaacttaattggaatactt |
141 |
Q |
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| T |
49785691 |
ttaaatcacagttcaaccataaatgaattggggatgaggatttggcaatcttgttcattttactattaaaagaaagtttttcaacttaattggaatactt |
49785592 |
T |
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| Q |
142 |
tattttagggactcataaacttgagtaaattgaccatattcctttcctaccatttagagcacgaaagtccgttagaataattatgtaaaataaagtaaaa |
241 |
Q |
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| T |
49785591 |
tattttagggactcataaacttgagtaaattgaccatattcctttcctaccatttagagcacgaaagtccgttagaataattacgtaaaataaagtaaaa |
49785492 |
T |
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| Q |
242 |
tagtttgtatgtgcctcccc |
261 |
Q |
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| T |
49785491 |
tagtttgtatgtgcctcccc |
49785472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 49785411 - 49785347
Alignment:
| Q |
322 |
gtaaacctgcgttcttcaaatagaaaggaaatgttacggggtccttttgatttttggataaaacat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49785411 |
gtaaacctgcgttcttcaaatagaaaggaaatgttac-gggtccttttgatttttggataaaacat |
49785347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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