View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_16 (Length: 350)
Name: NF6722_low_16
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 40623524 - 40623831
Alignment:
| Q |
20 |
ctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagctagagctattaacaatggga |
119 |
Q |
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| T |
40623524 |
ctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagctagagctattaacaatggga |
40623623 |
T |
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| Q |
120 |
ctcagatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcattccaagac |
219 |
Q |
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| T |
40623624 |
ctcagatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcattccaagac |
40623723 |
T |
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| Q |
220 |
tgcacaggtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggttcttttttcttatccataagctttttgtgtttcactttagtgtg |
319 |
Q |
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| T |
40623724 |
tgcacaggtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggttcttttttcttatccataagctttttgtgtttcactttagtgtg |
40623823 |
T |
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| Q |
320 |
ctaatgag |
327 |
Q |
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|||||||| |
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| T |
40623824 |
ctaatgag |
40623831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 27511891 - 27512125
Alignment:
| Q |
23 |
acaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagctagagctattaacaatgggactc |
122 |
Q |
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| T |
27511891 |
acaaagtccaaagatgttggtggatttaccaaaataacatcttcatcatcttcaacttcagggtcatctaagaaagctagagctattaacaatggaactc |
27511990 |
T |
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| Q |
123 |
agatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgc |
222 |
Q |
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| T |
27511991 |
agatagtttcaagtcttgcggatggttgtcaagctgatcttagtaactatagaggatatcatatgcgccataaggtctgcaaacttcattcaaagacttc |
27512090 |
T |
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| Q |
223 |
acaggtcacaattggtggacataagcaaaggttct |
257 |
Q |
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|||||| ||| |||||||||||||||||||||||| |
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| T |
27512091 |
acaggtgacacttggtggacataagcaaaggttct |
27512125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 27270466 - 27270398
Alignment:
| Q |
23 |
acaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatct |
91 |
Q |
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| T |
27270466 |
acaaagtccaaagatgttggtggatttaccaaaatgaaatcttcatcatcttcaacttcagggtcatct |
27270398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 275
Target Start/End: Original strand, 45410581 - 45410729
Alignment:
| Q |
127 |
agtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgcacag |
226 |
Q |
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|||||| |||||||||||||| || | ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| || || |
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| T |
45410581 |
agtttcttgtcttgtggatgggtgcaattctgatcttagtaattgtagagattatcataggcgtcataaggtttgtgaacttcattccaagactccagag |
45410680 |
T |
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| Q |
227 |
gtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggt |
275 |
Q |
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| T |
45410681 |
gttacaatttgtggccttaaacaaaggttctgccaacagtgtagcaggt |
45410729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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