View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_19 (Length: 314)
Name: NF6722_low_19
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_19 |
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| [»] scaffold0260 (2 HSPs) |
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Alignment Details
Target: scaffold0260 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: scaffold0260
Description:
Target: scaffold0260; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 20530 - 20227
Alignment:
| Q |
1 |
tgtgagttaactcacgcaggtgtataacccagcgtaagtcatgctcggcatacaacctacgtgactcaagtcacgtttcgaacaccagcgtgagttaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20530 |
tgtgagttaactcacgcaggtgtataacccagcgtaagtcacgctcggcatacaacctacgtgactcaagtcacgtttcgaacaccagcgtgagttaact |
20431 |
T |
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| Q |
101 |
cacgttggtgtcaaaacattccttttcactcttataactttttataagatgggagctgcataaggaaccttgtcaaataatgctgcacaaggtaaatgaa |
200 |
Q |
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| T |
20430 |
catgttggtgtcaaaacattccttttcactcttataacttttaataagatgggagctgcataaggaaccttgtcaaataatgctgcacaaggtaaatgaa |
20331 |
T |
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| Q |
201 |
taaaatatttgaatccacaaaaagttttgatctgaatgtattccaacgtaaggcctgcagactaaacttctaaattcatcatgaaagcaagaaaatactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20330 |
taaaatatttgaatccacaaaaagttttgatctgaatgtattccaacgtaaggcctgcagactaaacttctaaattcatcatgaaagcaagaaaatactg |
20231 |
T |
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| Q |
301 |
atgt |
304 |
Q |
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|||| |
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| T |
20230 |
atgt |
20227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0260; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 20153 - 20202
Alignment:
| Q |
70 |
gtcacgtttcgaacaccagcgtgagttaactcacgttggtgtcaaaacat |
119 |
Q |
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| T |
20153 |
gtcatgttccgaacatcagcatgagttaactcatgttggtgtcaaaacat |
20202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 2769390 - 2769512
Alignment:
| Q |
183 |
ctgcacaaggtaaatgaataaaatatttgaatccacaaaaagttttgatctgaatgtattccaacgtaaggcctgcagactaaacttctaaattcatcat |
282 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
2769390 |
ctgcacaagaaaaatgaataaaatattcgaatccacaaaaagttttgatctgaatgtattccaatgtaaggcctgcagactgaacttctaaattcatcat |
2769489 |
T |
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| Q |
283 |
gaaagcaagaaaatactgatgtc |
305 |
Q |
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|||||||||||||||||||||| |
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| T |
2769490 |
caaagcaagaaaatactgatgtc |
2769512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 2769243 - 2769278
Alignment:
| Q |
144 |
ataagatgggagctgcataaggaaccttgtcaaata |
179 |
Q |
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| T |
2769243 |
ataagatgggagctgcataaggaaccttgtcaaata |
2769278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 30943485 - 30943538
Alignment:
| Q |
73 |
acgtttcgaacaccagcgtgagttaactcacgttggtgtcaaaacattcctttt |
126 |
Q |
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| T |
30943485 |
acgtttcgaacatcaacgtgagttaactcacgttggtgtcaaaacattcctttt |
30943538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 28009221 - 28009188
Alignment:
| Q |
2 |
gtgagttaactcacgcaggtgtataacccagcgt |
35 |
Q |
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| T |
28009221 |
gtgagttaactcacgcaggtgtataacccagcgt |
28009188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 28066524 - 28066491
Alignment:
| Q |
2 |
gtgagttaactcacgcaggtgtataacccagcgt |
35 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28066524 |
gtgagttaactcacgcaggtgtataacccagcgt |
28066491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 30943579 - 30943546
Alignment:
| Q |
71 |
tcacgtttcgaacaccagcgtgagttaactcacg |
104 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
30943579 |
tcacgttccgaacaccagcgtgagttaactcacg |
30943546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 28999468 - 28999394
Alignment:
| Q |
50 |
atacaacctacgtgactcaagtcacgtttcgaacaccagcgtgagttaactcacgttggtgtcaaaacattccttttca |
128 |
Q |
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| T |
28999468 |
atacaacctacgtgacttaagtcacgtttcgaacatcaacgtgagtta----acgctggtgtcaaaacattccttttca |
28999394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 47640790 - 47640734
Alignment:
| Q |
59 |
acgtgactcaagtcacgtttcgaacaccagcgtgagttaactcacgttggtgtcaaa |
115 |
Q |
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||||||| |||||||||| ||||||||| |||||||||||||||| || ||||||| |
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| T |
47640790 |
acgtgacataagtcacgttccgaacaccaacgtgagttaactcacgctgctgtcaaa |
47640734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16236280 - 16236314
Alignment:
| Q |
1 |
tgtgagttaactcacgcaggtgtataacccagcgt |
35 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
16236280 |
tgtgagttaactcacgcaggtatataacccagcgt |
16236314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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