View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6722_low_2 (Length: 707)

Name: NF6722_low_2
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6722_low_2
NF6722_low_2
[»] chr4 (1 HSPs)
chr4 (1-698)||(37052690-37053386)


Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Original strand, 37052690 - 37053386
Alignment:
Q  1 cctgaggataaaaacacataagactgataaaagataaagggacacaaccaatgtcacaagaaaataagctgtaaaagaaacagctgcatttttcgaatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37052690 cctgaggataaaaacacataagactgataaaagataaagggacacaaccaatgtcacaagaaaataaggtgtaaaagaaacagctgcatttttcgaatca 37052789  T
Q  101 acaaaagtgtcattaatttgcggcggataaaatcaaaagataccttcttgtcctgtgcagcacatgaattttctggatctgttgttgaaaaatcctaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37052790 acaaaagtgtcattaatttgcggcggataaaatcaaaagataccttcttgtcctgtgcagcacatgaattttctggatctgttgttgaaaaatcctaaaa 37052889  T
Q  201 ataaaagtaatactattagacatgaaatttgaagcatctttggttgagaacaggtcatgtcaagaaagaaacctcaaactggtgaccactaacggattac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37052890 ataaaagtaatactattagacatgaaatttgaagcatctttggttgagaacaggtcatgtcaagaaagaaacctcaaactggtgaccactaacggattac 37052989  T
Q  301 actctaatttgcattggattttgagggcaagtaatccaaacaaaaaggtagcaaatagacacaatctgtttcttagtatttatcataaatgaaatcattt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37052990 actctaatttgcattggattttgagggcaagtaatccaaacaaaaaggtagcaaatagacacaatctgtttcttagtatttatcataaatgaaatcattt 37053089  T
Q  401 atgatcctatgccaaaattctctagtgttgcatcataatgccatgtgatgtgacaactcgagaagatccaacatccaggttacacgaaaacgaaactggg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37053090 atgatcctatgccaaaattctctagtgttgcatcataatgccatgtgatgtgacaactcgagaagatccaacatccaggttacacgaaaacggaactggg 37053189  T
Q  501 tctctagagtttgttagttcttttattcttaaagtgtaatgctgaatgcagaatgaataacatattatattcttggttactttataacaggagaagacat 600  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37053190 tctctagag-ttgttagttcttttattcttaaagtgtaatgccgaatgcggaatgaataacatattatattcttggttactttataacaggagaagacat 37053288  T
Q  601 tgtccagtgaaaatatgcaaaatgnnnnnnnntaccagttcagtctgttcaaaagcaatccttcctgctttgccgagatctctcagtgttcccttcat 698  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37053289 tgtccagtgaaaatatgcaaaatgaaaaaaaataccagttcagtctgttcaaaagcaatccttcctgctttgccgagatctctcagtgttcccttcat 37053386  T

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