View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_20 (Length: 312)
Name: NF6722_low_20
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 122 - 310
Target Start/End: Original strand, 42984080 - 42984268
Alignment:
| Q |
122 |
atgcttttggttgattatcatttgatggtgtatgcccggcagcagatcatcgccaattcgccatagctccacgtccaactcctagatcttagaagttggt |
221 |
Q |
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| T |
42984080 |
atgcttttggttgattatcatttgatggtgtatgcccggcagcagatcatcgccaattcgccatagctccacgtccaactcctagatcttagaagttggt |
42984179 |
T |
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| Q |
222 |
ggttccaaagaacatgtaaaataacaaaataatatgtgatgagactcttactcagaatatttaatttcctttacaaaaccatcccattg |
310 |
Q |
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| T |
42984180 |
ggttctgaagaacatgtaaaataacaaaataatatgtgatgagactcttactcagaatatttaatttcctttacaaaaccatcccattg |
42984268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 42984003 - 42984080
Alignment:
| Q |
14 |
acatcatagggcatgagcgattctcgtcttgacaataaagttatgcaagattctctttgtaatgtggagtcatggcga |
91 |
Q |
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| T |
42984003 |
acatcatagggcatgagcgattctcgtcttgacaataaagttacgcaagattctctttgtaatgtggagtcatggcga |
42984080 |
T |
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