View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_25 (Length: 298)
Name: NF6722_low_25
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 37052690 - 37052970
Alignment:
| Q |
1 |
cctgaggataaaaacacataagactgataaaagataaagggacacaaccaatgtcacaagaaaataagctgtaaaagaaacagctgcatttttcgaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37052690 |
cctgaggataaaaacacataagactgataaaagataaagggacacaaccaatgtcacaagaaaataaggtgtaaaagaaacagctgcatttttcgaatca |
37052789 |
T |
|
| Q |
101 |
acaaaagtgtcattaatttgcggcggataaaatcaaaagataccttcttgtcctgtgcagcacatgaattttctggatctgttgttgaaaaatcctaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37052790 |
acaaaagtgtcattaatttgcggcggataaaatcaaaagataccttcttgtcctgtgcagcacatgaattttctggatctgttgttgaaaaatcctaaaa |
37052889 |
T |
|
| Q |
201 |
ataaaagtaatactattagacatgaaatttgaagcatctttggttgagaacaggtcatgtcaagaaagaaacctcaaactg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37052890 |
ataaaagtaatactattagacatgaaatttgaagcatctttggttgagaacaggtcatgtcaagaaagaaacctcaaactg |
37052970 |
T |
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