View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6722_low_32 (Length: 248)

Name: NF6722_low_32
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6722_low_32
NF6722_low_32
[»] chr8 (8 HSPs)
chr8 (74-248)||(19491975-19492149)
chr8 (32-147)||(9765553-9765668)
chr8 (137-248)||(3000093-3000204)
chr8 (32-126)||(26402950-26403044)
chr8 (20-58)||(19491936-19491974)
chr8 (32-126)||(6127505-6127598)
chr8 (32-78)||(28307842-28307888)
chr8 (42-110)||(13204532-13204599)
[»] chr1 (7 HSPs)
chr1 (20-248)||(41360632-41360845)
chr1 (128-248)||(13138321-13138441)
chr1 (32-127)||(19073210-19073305)
chr1 (32-127)||(19121100-19121195)
chr1 (32-126)||(47703657-47703750)
chr1 (32-120)||(40816544-40816631)
chr1 (32-127)||(17345283-17345378)
[»] chr3 (5 HSPs)
chr3 (37-245)||(21353852-21354060)
chr3 (32-127)||(25796062-25796156)
chr3 (35-126)||(3715712-3715803)
chr3 (32-120)||(4386696-4386783)
chr3 (32-82)||(47649852-47649902)
[»] chr6 (3 HSPs)
chr6 (37-248)||(14521961-14522173)
chr6 (32-127)||(21801064-21801159)
chr6 (92-147)||(3039222-3039278)
[»] chr2 (7 HSPs)
chr2 (32-150)||(2837725-2837844)
chr2 (32-150)||(1344242-1344361)
chr2 (32-147)||(34682032-34682148)
chr2 (32-202)||(42269651-42269823)
chr2 (32-126)||(31056325-31056419)
chr2 (32-127)||(8040346-8040442)
chr2 (160-219)||(2837676-2837735)
[»] chr4 (6 HSPs)
chr4 (32-125)||(6542429-6542521)
chr4 (35-125)||(51336892-51336981)
chr4 (34-118)||(24334095-24334178)
chr4 (32-126)||(3793802-3793895)
chr4 (32-77)||(4587832-4587877)
chr4 (34-78)||(54200155-54200199)
[»] chr7 (5 HSPs)
chr7 (155-248)||(31105745-31105838)
chr7 (32-126)||(5816994-5817087)
chr7 (32-83)||(29160087-29160138)
chr7 (32-78)||(3047534-3047580)
chr7 (98-147)||(41317761-41317811)
[»] chr5 (3 HSPs)
chr5 (32-120)||(3880582-3880669)
chr5 (32-126)||(10282034-10282126)
chr5 (33-126)||(33030662-33030755)
[»] scaffold0148 (1 HSPs)
scaffold0148 (32-126)||(11013-11106)
[»] scaffold0477 (1 HSPs)
scaffold0477 (32-83)||(5722-5773)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 19491975 - 19492149
Alignment:
Q  74 ctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcaggtttcgcagcatcgtaccacgatgcctcccattgtactacgatggag 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19491975 ctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcaggtttcgcagcatcgtaccacgatgcctcccattgtactacgatggag 19492074  T
Q  174 cagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgtactacgatttttcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19492075 cagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgtactacgatttttcc 19492149  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 9765668 - 9765553
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg-ttt 130  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||||||| |||| ||||||  |||| || ||||||||||||||| ||||||  |     
T  9765668 cactcaaccctcaagttacctcctttgtattcccaagtttctctctcaaagccacactcaaaaa-atgaataaagaagccttaaatagtgttcaggaata 9765570  T
Q  131 cgcagcatcgtaccacg 147  Q
    ||||||||||| |||||    
T  9765569 cgcagcatcgtgccacg 9765553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 3000093 - 3000204
Alignment:
Q  137 atcgtaccacgatgcctcccattgtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgtac 236  Q
    ||||||| |||||  ||||||| |||||| |||||||||| |  ||||||||||||||||||| |||| |||||||||||||| || | || |||||| |    
T  3000093 atcgtacgacgatttctcccatcgtactaggatggagcaggtgacagtacaatactatgccttgtccatcaaaatcgtactacgatttctcccatcgtgc 3000192  T
Q  237 tacgatttttcc 248  Q
    ||| ||||||||    
T  3000193 tacaatttttcc 3000204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 26403044 - 26402950
Alignment:
Q  32 cactcaaccctaaa-gttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||| || | | ||||  ||||||| ||||||||||||||| |||||    
T  26403044 cactcaaccctaaaagttacctcctttgtattcctaggtttctctctcaaagctactcac-aaaagatgaagaaagaagccttaaatagtgttcag 26402950  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 19491936 - 19491974
Alignment:
Q  20 tcactacacatgcactcaaccctaaagttgcctcctttg 58  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  19491936 tcactacacatgcactcaaccctaaagttacctcctttg 19491974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 6127505 - 6127598
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    ||||||||||| |||||  ||| ||||||||| ||| |||||| |||||||| |||| | ||||  ||||||| |||| |||||||||| |||||    
T  6127505 cactcaaccctcaagttatctcttttgtattcatagatttctccctcaaagccacacac-aaaagatgaagaaagaagtcttaaatagtgttcag 6127598  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 28307842 - 28307888
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctc 78  Q
    |||||||| |||||||| ||||||||||| ||||| |||||||||||    
T  28307842 cactcaactctaaagttacctcctttgtaatcctaagtttctctctc 28307888  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 13204599 - 13204532
Alignment:
Q  42 taaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagc 110  Q
    ||||||| ||||||||||||| | | ||||||||||| |||| |||| | ||||| |||||||||||||    
T  13204599 taaagttacctcctttgtatttccaagtttctctctctaagccacacac-aaaacatgaagaatgaagc 13204532  T

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Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 41360845 - 41360632
Alignment:
Q  20 tcactacacatgcactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatag 119  Q
    ||||||||||||||||||||||||||||| |||||||||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  41360845 tcactacacatgcactcaaccctaaagttacctcctttg---------------ctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatag 41360761  T
Q  120 tattcaggtttcgcagcatcgtaccacgatgcctcccattgtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactac 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41360760 tattcaggtttcgcagcatcgtaccacgatgcctcccattgtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactac 41360661  T
Q  220 tatgtatctcatcgtactacgatttttcc 248  Q
    |||||||||||||||||||||||||||||    
T  41360660 tatgtatctcatcgtactacgatttttcc 41360632  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 13138321 - 13138441
Alignment:
Q  128 tttcgcagcatcgtaccacgatgcctcccattgtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatc 227  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| || | ||    
T  13138321 tttcgcagcatcgtactactgtgcctcccatcgtactacgatggagcagataacaatacagtactatgccttatccaacaaaatcgtactacgatatctc 13138420  T
Q  228 tcatcgtactacgatttttcc 248  Q
     ||||||||||||||||||||    
T  13138421 ccatcgtactacgatttttcc 13138441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 19073210 - 19073305
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg 127  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||||| | |||| ||||||  ||||||| ||||||||||||||| ||||||    
T  19073210 cactcaaccctcaagttacctcctttgtattcccaagtttctctctcaaaaccacactcaaaaaaatgaagaaagaagccttaaatagtgttcagg 19073305  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 19121100 - 19121195
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg 127  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||||| | |||| ||||||  ||||||| ||||||||||||||| ||||||    
T  19121100 cactcaaccctcaagttacctcctttgtattcccaagtttctctctcaaaaccacactcaaaaaaatgaagaaagaagccttaaatagtgttcagg 19121195  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 47703750 - 47703657
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    ||||||||||||||||| ||||||||||||||  | |||||||||||||||| |||| | ||||  ||||||| ||||||||||||||| |||||    
T  47703750 cactcaaccctaaagttacctcctttgtattctcaagtttctctctcaaagccacacac-aaaagatgaagaaagaagccttaaatagtgttcag 47703657  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 40816631 - 40816544
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagt 120  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||||||| |||| | ||||  ||||||| |||||||||||||||    
T  40816631 cactcaaccctcaagttacctcctttgtattcccaagtttctctctcaaagccacacac-aaaagatgaagaaagaagccttaaatagt 40816544  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 17345378 - 17345283
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg 127  Q
    ||||||||||||||  | ||||||||||||||  | ||||| ||||| |||| |||| ||| || |||||||||||||||||||||||| ||||||    
T  17345378 cactcaaccctaaatgtacctcctttgtattctcatgtttccctctctaagccacactcaataaattgaagaatgaagccttaaatagtgttcagg 17345283  T

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Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 21353852 - 21354060
Alignment:
Q  37 aaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg-tttcgcag 135  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||| |||| ||  ||||| |||| |||||| ||||||||    
T  21353852 aaccctaaagttacctcctttgtattcctaggtttctctctctaagccatacccaaaaacttga-gaataaaatcttaattagtgttcaggatttcgcag 21353950  T
Q  136 catcgtaccacgatgcctcccattgtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgta 235  Q
    |||| ||| |||||  ||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||   || | || |||||||    
T  21353951 catcctactacgatttctcccatcgtactatgatggagcagataacagtacaatattatgccttatccaacaaaatcgtactgtgatttctcccatcgta 21354050  T
Q  236 ctacgatttt 245  Q
    ||||||||||    
T  21354051 ctacgatttt 21354060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 25796062 - 25796156
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg 127  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||||||| |||| ||||||  ||||||| ||||||||||||||| ||||||    
T  25796062 cactcaaccctcaagttacctcctttgtattcccaagtttctctctcaaagccacacacaaaaa-atgaagaaagaagccttaaatagtgttcagg 25796156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 3715803 - 3715712
Alignment:
Q  35 tcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    |||||||||||||| ||||||||||||||  | ||||||||||||||||     ||||||| |||||||| ||||||||||||||| |||||    
T  3715803 tcaaccctaaagttacctcctttgtattctcaagtttctctctcaaagctctctccaaaaaattgaagaaagaagccttaaatagtgttcag 3715712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 4386783 - 4386696
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagt 120  Q
    ||||||||||||||||| |||||||||||||   | ||||||||||| |||  |||| | ||| | |||||||||||||||||||||||    
T  4386783 cactcaaccctaaagttacctcctttgtattttcaagtttctctctctaagacacacac-aaatcatgaagaatgaagccttaaatagt 4386696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 47649852 - 47649902
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaag 82  Q
    |||||||||||||||||  |||||||||||||| | |||||| ||||||||    
T  47649852 cactcaaccctaaagttatctcctttgtattcccaagtttctatctcaaag 47649902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 37 - 248
Target Start/End: Original strand, 14521961 - 14522173
Alignment:
Q  37 aaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag-gtttcgcag 135  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||  ||||||| ||||||||||||||| |||||  | ||||||    
T  14521961 aaccctaaagttacctcatttgtattcctaggtttctctctcaaagcaacacaaaaaaaaatgaagaaagaagccttaaatagtgttcagcatctcgcag 14522060  T
Q  136 catcgtaccacgatgcctcccattgtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgta 235  Q
    |||||||| |||||  || |||| ||| ||||||||||||| || || |||| |||||||||||||||||||| |||| ||||| || | || |||||||    
T  14522061 catcgtactacgatatctaccatcgtattacgatggagcaggtaacaatacagtactatgccttatccaacaacatcgcactacgatatctcccatcgta 14522160  T
Q  236 ctacgatttttcc 248  Q
    |||| ||||||||    
T  14522161 ctacaatttttcc 14522173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 21801159 - 21801064
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg 127  Q
    ||||||||||| ||||| ||| ||||||||||  | |||||||||||||||| |||| ||||||  ||||||| ||||||||||||||| ||||||    
T  21801159 cactcaaccctcaagttacctgctttgtattctcaagtttctctctcaaagccacactcaaaaaaatgaagaaagaagccttaaatagtgttcagg 21801064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 3039222 - 3039278
Alignment:
Q  92 aaaacttgaagaatgaagccttaaatagtattcagg-tttcgcagcatcgtaccacg 147  Q
    |||| |||||||||||||||||||||||| ||||||  | ||||||||||| |||||    
T  3039222 aaaaattgaagaatgaagccttaaatagtgttcaggaatacgcagcatcgtgccacg 3039278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 2837844 - 2837725
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg-ttt 130  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||| ||| || |||    
T  2837844 cactcaaccctaaagttacctcctttgtattcttaggtttctctcttaaagccaatcccaaaaacttgaagaatgaagccttaaatagtgttcgggattt 2837745  T
Q  131 cgcagcatcgtaccacgatg 150  Q
    ||||||| ||||| ||||||    
T  2837744 cgcagcaccgtactacgatg 2837725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 1344361 - 1344242
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattc-aggttt 130  Q
    |||||||||||||| || |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| | || ||     
T  1344361 cactcaaccctaaaattacctcatttgtattcataggtttctctctcaaagccacacccaaaaacttgaagaacgaaaccttaaatagtatgcaagatta 1344262  T
Q  131 cgcagcatcgtaccacgatg 150  Q
    ||||| ||||||| ||||||    
T  1344261 cgcagaatcgtactacgatg 1344242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 34682148 - 34682032
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg-ttt 130  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||| ||||||  ||||||| ||||||||||||||| ||||||  |     
T  34682148 cactcaaccctaaagttacctcctttgtattcccaagtttctctctcaaagccacacacaaaaaaatgaagaaagaagccttaaatagtgttcaggaata 34682049  T
Q  131 cgcagcatcgtaccacg 147  Q
    ||||||||||| |||||    
T  34682048 cgcagcatcgtgccacg 34682032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 42269651 - 42269823
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcagg-ttt 130  Q
    ||||||||| ||||||| ||||||||||||||| | |||||||||||||||| |||| ||||||  | ||||| ||||||||||||||| ||||||  |     
T  42269651 cactcaaccttaaagttacctcctttgtattcccaagtttctctctcaaagccacactcaaaaaaataaagaaagaagccttaaatagtgttcaggaata 42269750  T
Q  131 cgcagcatcgtaccacgatgcct-cccattgtactacgatggagcagatagcagtacaatactatgccttatc 202  Q
    ||||||||||| ||||| | | | ||||| || | |||||||||||| |   ||||||||||||| |||||||    
T  42269751 cgcagcatcgtgccacgtttcgtgcccatcgtgccacgatggagcaggtgatagtacaatactataccttatc 42269823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 31056325 - 31056419
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    ||||||||||| ||||| ||||||||||||||| | |||||||||||||||| |||| ||||||  ||||||| ||||||||||||||| |||||    
T  31056325 cactcaaccctcaagttacctcctttgtattcccaagtttctctctcaaagccacactcaaaaaaatgaagaaagaagccttaaatagtgttcag 31056419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 8040346 - 8040442
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaa-cttgaagaatgaagccttaaatagtattcagg 127  Q
    ||||||||| ||||||| ||||||||||||| | | |||||||||||||||| ||||| |||||   |||||||  |||||||||||||| ||||||    
T  8040346 cactcaaccataaagttacctcctttgtattaccaagtttctctctcaaagccacaccaaaaaataatgaagaaataagccttaaatagtgttcagg 8040442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 2837735 - 2837676
Alignment:
Q  160 gtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactac 219  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||||||| ||||||||||    
T  2837735 gtactacgatggagcaggtaacagtacagtactatgcctaatccaacaacatcgtactac 2837676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 6542429 - 6542521
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattca 125  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||| ||||    
T  6542429 cactcaaccctaaagttacctcctttgtattcctaggtttctctctcaaagccacacac-aaaacatgaagaatgaagccttaaatagtgttca 6542521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 51336981 - 51336892
Alignment:
Q  35 tcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattca 125  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||| || ||  ||||| |||||||||||| || ||||||| ||||    
T  51336981 tcaaccctaaagttacttcctttgtattcctaagtttctctctcaaagccac-ccgcaaaacatgaagaatgaagtctcaaatagtgttca 51336892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 24334095 - 24334178
Alignment:
Q  34 ctcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaata 118  Q
    ||||||||||||||| ||| ||||||||||| | |||||||||||||||| |||| | ||||  ||||||| |||||||||||||    
T  24334095 ctcaaccctaaagttaccttctttgtattcccaagtttctctctcaaagccacacac-aaaagatgaagaaagaagccttaaata 24334178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 3793895 - 3793802
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    ||||||||||||||||| |||||||| |||||| | |||||||||||||||| | || | ||||  ||||||| ||| ||||||||||| |||||    
T  3793895 cactcaaccctaaagttacctcctttatattcccaagtttctctctcaaagctaaacac-aaaagatgaagaaagaaaccttaaatagtgttcag 3793802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 4587877 - 4587832
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctct 77  Q
    |||| ||||||||||||  ||| |||||||||||||||||||||||    
T  4587877 cacttaaccctaaagttatctcatttgtattcctaggtttctctct 4587832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 54200155 - 54200199
Alignment:
Q  34 ctcaaccctaaagttgcctcctttgtattcctaggtttctctctc 78  Q
    ||||||||||||||| |||||||||  |||||| |||||||||||    
T  54200155 ctcaaccctaaagttacctcctttgatttcctaagtttctctctc 54200199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 31105745 - 31105838
Alignment:
Q  155 ccattgtactacgatggagcagatagcagtacaatactatgccttatccaacaaaatcgtactactatgtatctcatcgtactacgatttttcc 248  Q
    |||| |||||||||||||||| |||  |||| ||||||||||||||||||||||||||||||||| || | || ||||||||| ||||||||||    
T  31105745 ccatcgtactacgatggagcaaataatagtataatactatgccttatccaacaaaatcgtactacgatttctcccatcgtactgcgatttttcc 31105838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 5817087 - 5816994
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    ||||||||| ||||||| ||||||||||||||| | ||||||||||| |||| ||| |  ||||||||||||||||||| ||||||||| |||||    
T  5817087 cactcaaccataaagttacctcctttgtattcccaagtttctctctctaagccaca-cataaaacttgaagaatgaagcattaaatagtgttcag 5816994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 29160087 - 29160138
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagc 83  Q
    |||||||||| |||||| ||||||||||||||| | ||||||||||||||||    
T  29160087 cactcaacccaaaagttacctcctttgtattcccaagtttctctctcaaagc 29160138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 3047534 - 3047580
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctc 78  Q
    ||||||||||||||||| ||||||||||| ||| | |||||||||||    
T  3047534 cactcaaccctaaagttacctcctttgtaatcccaagtttctctctc 3047580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 41317761 - 41317811
Alignment:
Q  98 tgaagaatgaagccttaaatagtattcaggt-ttcgcagcatcgtaccacg 147  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||| |||||    
T  41317761 tgaagaatgaagccttaaatagtgttcaggtatccgcagcatcgtgccacg 41317811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 3880582 - 3880669
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagt 120  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||||| || ||  ||||  ||||||| |||||||||||||||    
T  3880582 cactcaactctcaagttacctcctttgtattcctaggtttctctctcaaagctac-ccacaaaagatgaagaaagaagccttaaatagt 3880669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 10282034 - 10282126
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    ||||||||||||||||| ||||||||||||||  | |||||||||||||||| |||| |||||  | ||||||  |||||||||||||| |||||    
T  10282034 cactcaaccctaaagttacctcctttgtattctcaagtttctctctcaaagccacactcaaaagat-gaagaaa-aagccttaaatagtgttcag 10282126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 33030755 - 33030662
Alignment:
Q  33 actcaaccctaaagttgcctcctttgtattcctaggtttctctctc-aaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    |||||||||||||||| |||| |||||||| |||||||||||| || ||||| |||| | ||||| |||| ||||||| |||| ||||| |||||    
T  33030755 actcaaccctaaagttacctcttttgtatttctaggtttctctttctaaagccacacac-aaaacatgaataatgaagtcttagatagtgttcag 33030662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 11013 - 11106
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagcaacacccaaaaacttgaagaatgaagccttaaatagtattcag 126  Q
    ||||||||| ||||||| ||||||||||||||| | |||||||||||||||| |||| | ||||  ||||||| |||| |||||||||| |||||    
T  11013 cactcaaccataaagttacctcctttgtattccaaagtttctctctcaaagcgacacac-aaaagatgaagaaagaagtcttaaatagtgttcag 11106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 5773 - 5722
Alignment:
Q  32 cactcaaccctaaagttgcctcctttgtattcctaggtttctctctcaaagc 83  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  5773 cactcaaccctcaagttacctcctttgtattcctaggtttctctcttaaagc 5722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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