View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_33 (Length: 244)
Name: NF6722_low_33
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_33 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 3218632 - 3218867
Alignment:
| Q |
9 |
gatggacatctgagcacttagtatgctaacacgaacatgctatagtgtttaaggtcactcatccagctgtagcattttgaagggccagcccctatttggg |
108 |
Q |
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| T |
3218632 |
gatggacatctgagcacttagtatgctaacacgaacatgctatagtgtttaaggtcactcatccagctgtagcattttgaagggccagcccctatttggg |
3218731 |
T |
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| Q |
109 |
attgataaacacttattctaacacttatcttttattttctgtgtataaggatatcttatcatcctcccattttttaacttacccccttgcccttatttta |
208 |
Q |
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| T |
3218732 |
attgataaacacttattctaacacttatcttttattttctgtgtataaggatatcttatcatcctcccattttttaacttacccccttgcccttatttta |
3218831 |
T |
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| Q |
209 |
actataagataattattttgttttcaaaaacgtaaa |
244 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
3218832 |
tctataagataattattttgttttcaaaagcgtaaa |
3218867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 15987058 - 15986862
Alignment:
| Q |
7 |
gagatggacatctgagcacttagtatgctaacacgaacatgctatagtgtttaaggtcactcatccagctgtagcattttgaagggccagcccctatttg |
106 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||| || |||||||||||| |||| | ||||||||| |
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| T |
15987058 |
gagatggacatctgagcacttagtatgccaacacgaacacgctatagtgtttaaggtcagtaatcccactatagcattttgaaaggccggaccctatttg |
15986959 |
T |
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| Q |
107 |
ggattgataaacacttattctaacacttatcttttattttctgtgtataaggatatcttatcatcctcccattttttaacttacccccttgcccttattt |
206 |
Q |
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| T |
15986958 |
ggattcataaatacttcttctaacacttatcttttaaattctgtgt---aggatatcttatcatcctcccatattttaactta-tcccttgcccttattt |
15986863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 23726948 - 23727112
Alignment:
| Q |
11 |
tggacatctgagcacttagtatgctaacacgaacatgctatagtgtttaaggtcactcatccagctgtagcattttgaagggccagcccctatttgggat |
110 |
Q |
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|||||||||||||||||||||||| ||||| ||| | |||||||||||| |||| |||||| ||| || |||||||||||||| |||| |||||||||| |
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| T |
23726948 |
tggacatctgagcacttagtatgcgaacacaaacgcgatatagtgtttaaagtcattcatcccgctatatcattttgaagggccggcccttatttgggat |
23727047 |
T |
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| Q |
111 |
tgataaacacttattctaacacttatcttttattttctgtgtataaggatatcttatcatcctcc |
175 |
Q |
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||||| |||||||||||||||||| | |||||||||||||||| | | | |||||||| |||||| |
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| T |
23727048 |
tgatatacacttattctaacacttttattttattttctgtgtagaggaacatcttatcctcctcc |
23727112 |
T |
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