View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_35 (Length: 237)
Name: NF6722_low_35
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 35409819 - 35409602
Alignment:
| Q |
11 |
tggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattccta |
110 |
Q |
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| T |
35409819 |
tggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaattaatgcgaaaattaattccta |
35409720 |
T |
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| Q |
111 |
atgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttctatcatcactgccaagcttatttcaggcaacaaagttcatggctgt |
210 |
Q |
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| T |
35409719 |
atgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttctatcatcactgccaagcttatttcaggcaacaaagttcatggctgt |
35409620 |
T |
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| Q |
211 |
gattaacacaggttctgc |
228 |
Q |
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| T |
35409619 |
gattaacataggttctgc |
35409602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 35408311 - 35408243
Alignment:
| Q |
157 |
atactttctatcatcactgccaagcttatttcaggcaacaaagttcatggctgtgattaacacaggttc |
225 |
Q |
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||||||||| |||||||||||||| ||||||||||| | || ||||||||||||||| |||| |||||| |
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| T |
35408311 |
atactttctgtcatcactgccaagtttatttcaggcgaaaaggttcatggctgtgatcaacataggttc |
35408243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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