View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6722_low_38 (Length: 233)

Name: NF6722_low_38
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6722_low_38
NF6722_low_38
[»] chr4 (11 HSPs)
chr4 (94-158)||(5466565-5466629)
chr4 (39-95)||(20069620-20069677)
chr4 (39-94)||(26252559-26252615)
chr4 (42-84)||(31083422-31083464)
chr4 (39-95)||(31943949-31944005)
chr4 (39-97)||(31082182-31082241)
chr4 (56-97)||(48259820-48259862)
chr4 (56-96)||(31090400-31090441)
chr4 (39-96)||(46046746-46046803)
chr4 (56-95)||(3273620-3273660)
chr4 (39-83)||(15640728-15640772)
[»] chr6 (4 HSPs)
chr6 (189-232)||(9290074-9290117)
chr6 (189-232)||(24497659-24497702)
chr6 (39-98)||(32017825-32017885)
chr6 (56-100)||(24732276-24732321)
[»] scaffold0477 (1 HSPs)
scaffold0477 (56-104)||(5086-5134)
[»] chr7 (4 HSPs)
chr7 (192-232)||(17513323-17513363)
chr7 (192-232)||(17539851-17539891)
chr7 (39-83)||(38879735-38879779)
chr7 (189-232)||(41678310-41678354)
[»] chr2 (2 HSPs)
chr2 (39-94)||(44098944-44099000)
chr2 (189-232)||(26223830-26223873)
[»] chr8 (5 HSPs)
chr8 (189-232)||(5660933-5660976)
chr8 (189-232)||(18558763-18558806)
chr8 (56-105)||(7689862-7689912)
chr8 (39-98)||(10108366-10108426)
chr8 (39-83)||(14820307-14820351)
[»] chr5 (10 HSPs)
chr5 (189-232)||(26701405-26701448)
chr5 (189-232)||(26971138-26971181)
chr5 (189-232)||(40690950-40690993)
chr5 (189-232)||(41310065-41310108)
chr5 (189-232)||(25073796-25073839)
chr5 (189-232)||(25131767-25131810)
chr5 (48-96)||(29445136-29445185)
chr5 (39-83)||(24837491-24837535)
chr5 (56-99)||(30512283-30512327)
chr5 (56-99)||(30552623-30552667)
[»] chr3 (8 HSPs)
chr3 (41-94)||(14161871-14161925)
chr3 (56-104)||(21632891-21632940)
chr3 (39-96)||(30500362-30500420)
chr3 (39-95)||(16722313-16722370)
chr3 (39-95)||(33372405-33372462)
chr3 (56-103)||(16721982-16722030)
chr3 (39-94)||(19720333-19720389)
chr3 (39-102)||(35741906-35741970)
[»] chr1 (6 HSPs)
chr1 (192-232)||(20569781-20569821)
chr1 (189-232)||(26474036-26474079)
chr1 (45-83)||(27039650-27039688)
chr1 (192-232)||(20573702-20573742)
chr1 (189-229)||(27301309-27301349)
chr1 (39-83)||(43401072-43401116)
[»] scaffold0185 (1 HSPs)
scaffold0185 (39-95)||(3868-3925)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 5466565 - 5466629
Alignment:
Q  94 ctttattttatagaagcacaagaccaatgcatgcgaaaactagctaattttcaacaaagttggat 158  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5466565 ctttattttatagaagcacaagaccaatgcatacgaaaactagctaattttcaacaaagttggat 5466629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 20069620 - 20069677
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaa-ggatatttaccct 95  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  20069620 acagggaccaaaactggaattcgctcatattacagggacgaaaagggatatttaccct 20069677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 26252559 - 26252615
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 94  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  26252559 acaggaactaaaactggaattcgctaatattacagggacgaaaagagatatttaccc 26252615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 31083422 - 31083464
Alignment:
Q  42 ggaaccaaaactgtaattcgctcatattacagggacgaaaagg 84  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  31083422 ggaaccaaaaccggaattcgctcatattacagggacgaaaagg 31083464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 31944005 - 31943949
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaaggatatttaccct 95  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||  ||||||||||    
T  31944005 acaggaactaaaaccggaattcgctaatattacagggacgaaaagagtatttaccct 31943949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 31082241 - 31082182
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaa-ggatatttacccttt 97  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||| || ||||||||||||    
T  31082241 acagggaccaaacctggaattcgctcatattatagggacgaaaaggggtatttacccttt 31082182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 48259862 - 48259820
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttacccttt 97  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  48259862 aattcgctaatattacagggacgaaaagagatatttacccttt 48259820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 31090400 - 31090441
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccctt 96  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  31090400 aattcgctaatattacagggacgaaaagagatatttaccctt 31090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 46046746 - 46046803
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaaggatatttaccctt 96  Q
    ||||| || ||||| | |||||||| |||||||||||||||||| | |||||||||||    
T  46046746 acagggactaaaaccggaattcgctaatattacagggacgaaaaaggtatttaccctt 46046803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 3273660 - 3273620
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccct 95  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  3273660 aattcgctaatattacagggacgaaaagagatatttaccct 3273620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 15640772 - 15640728
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 83  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||    
T  15640772 acaggaactaaaaccggaattcgctaatattacagggacgaaaag 15640728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 9290117 - 9290074
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  9290117 cgcgtgttttccggcggctaaaaaatgtatgttccggcggtttt 9290074  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 24497659 - 24497702
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  24497659 cgcgtgtttttcggcggctaaaaaatgtatgttccggcggtttt 24497702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 32017825 - 32017885
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttacccttta 98  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| |||||||||||||||    
T  32017825 acagggactaaaaccggaattcgctaatattacagggacgaaaagagatatttacccttta 32017885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 24732276 - 24732321
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccctttatt 100  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||    
T  24732276 aattcgctaatattacagggacgaaaagaggtatttaccctttatt 24732321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 5086 - 5134
Alignment:
Q  56 aattcgctcatattacagggacgaaaaggatatttaccctttattttat 104  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  5086 aattcgctaatattacatggacgaaaagggtatttaccctttattttat 5134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 17513363 - 17513323
Alignment:
Q  192 gtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17513363 gtgttttccggcggctaaaaaatgtatgttccggcggtttt 17513323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 17539851 - 17539891
Alignment:
Q  192 gtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17539851 gtgttttccggcggctaaaaaatgtatgttccggcggtttt 17539891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 38879779 - 38879735
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 83  Q
    |||||||| |||| || |||||||| |||||||||||||||||||    
T  38879779 acaggaactaaaattggaattcgctaatattacagggacgaaaag 38879735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 41678310 - 41678354
Alignment:
Q  189 cgcgtgttttccggcggct-aaaaaatgtttgttccggcggtttt 232  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||    
T  41678310 cgcgtgttttccggcagctaaaaaaatgtatgttccggcggtttt 41678354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 44098944 - 44099000
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 94  Q
    ||||||||||||||   |||||||||||||||||||||||||||| |||||||||||    
T  44098944 acaggaaccaaaaccagaattcgctcatattacagggacgaaaagagatatttaccc 44099000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 26223873 - 26223830
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  26223873 cgcgtgttttccggcggctaaaaaatgtatattccggcggtttt 26223830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 5660976 - 5660933
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  5660976 cgcgtgttttccgacggctaaaaaatgtatgttccggcggtttt 5660933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 18558763 - 18558806
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||| ||||||||||||||||| |||||||||||||||    
T  18558763 cgcgtgtttttcggcggctaaaaaatgtatgttccggcggtttt 18558806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 7689862 - 7689912
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccctttattttata 105  Q
    |||||||| ||||||||||||||||||| | ||||||||||||| ||||||    
T  7689862 aattcgctaatattacagggacgaaaagaggtatttaccctttaatttata 7689912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 10108426 - 10108366
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttacccttta 98  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| | |||||||||||||    
T  10108426 acagggactaaaaccggaattcgctaatattacagggacgaaaagaggtatttacccttta 10108366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 14820351 - 14820307
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 83  Q
    |||||||| ||||| | |||||||| |||||||||||||||||||    
T  14820351 acaggaactaaaaccggaattcgctaatattacagggacgaaaag 14820307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 26701448 - 26701405
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  26701448 cgcgtgttttccggtggctaaaaaatgtatgttccggcggtttt 26701405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 26971181 - 26971138
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  26971181 cgcgtgttttccggtggctaaaaaatgtatgttccggcggtttt 26971138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 40690993 - 40690950
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||||||||||||||||||||| ||||| |||||||||    
T  40690993 cgcgtgttttccggcggctaaaaaatgtatgttctggcggtttt 40690950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 41310108 - 41310065
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  41310108 cgcgtgttttccggcggctaaaaaatgtatattccggcggtttt 41310065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 25073839 - 25073796
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||    
T  25073839 cgcgtgttttccggcagctaaaaaatgtatgtttcggcggtttt 25073796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 25131810 - 25131767
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||    
T  25131810 cgcgtgttttccggcagctaaaaaatgtatgtttcggcggtttt 25131767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 29445136 - 29445185
Alignment:
Q  48 aaaactgtaattcgctcatattacagggacgaaaag-gatatttaccctt 96  Q
    ||||||| |||||||| ||||||||||||||||||| |||||| ||||||    
T  29445136 aaaactggaattcgctaatattacagggacgaaaagagatattaaccctt 29445185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 24837491 - 24837535
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 83  Q
    ||||| || ||||||| |||||||| |||||||||||||||||||    
T  24837491 acagggactaaaactggaattcgctaatattacagggacgaaaag 24837535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 30512327 - 30512283
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccctttat 99  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||    
T  30512327 aattcactaatattacagggacgaaaagagatatttaccctttat 30512283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 30552667 - 30552623
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccctttat 99  Q
    ||||| || ||||||||||||||||||| ||||||||||||||||    
T  30552667 aattcactaatattacagggacgaaaagagatatttaccctttat 30552623  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 14161925 - 14161871
Alignment:
Q  41 aggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 94  Q
    |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  14161925 aggaactaaaactggaattcgctaatattacagggacgaaaagagatatttaccc 14161871  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 21632940 - 21632891
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccctttattttat 104  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  21632940 aattcgctaatattacagggacgaaaagaggtatttaccctttattttat 21632891  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 30500362 - 30500420
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccctt 96  Q
    ||||| || ||||||| |||||||| ||||||||||||||||||| | |||||||||||    
T  30500362 acagggactaaaactggaattcgctaatattacagggacgaaaagaggtatttaccctt 30500420  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 16722313 - 16722370
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccct 95  Q
    ||||| || ||||||| |||||||| ||||||||||||||||||| | ||||||||||    
T  16722313 acagggactaaaactgaaattcgctaatattacagggacgaaaagaggtatttaccct 16722370  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 33372462 - 33372405
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccct 95  Q
    |||||||| |||||   |||||||| ||||||||||||||||||| ||||||||||||    
T  33372462 acaggaactaaaaccagaattcgctaatattacagggacgaaaagagatatttaccct 33372405  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 16722030 - 16721982
Alignment:
Q  56 aattcgctcatattacagggacgaaaag-gatatttaccctttatttta 103  Q
    |||||||| ||||||||||||||||||| | |||||||||||| |||||    
T  16722030 aattcgctaatattacagggacgaaaagaggtatttaccctttttttta 16721982  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 19720389 - 19720333
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccc 94  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| |||||||||||    
T  19720389 acagggactaaaaccggaattcgctaatattacagggacgaaaagagatatttaccc 19720333  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 35741906 - 35741970
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccctttatttt 102  Q
    ||||| || ||||||| |||||||| ||||||||||||| ||||| | |||| ||||||||||||    
T  35741906 acagggactaaaactggaattcgctaatattacagggaccaaaagtggtattaaccctttatttt 35741970  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 20569781 - 20569821
Alignment:
Q  192 gtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  20569781 gtgttttcccgcggctaaaaaatgtatgttccggcggtttt 20569821  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 26474079 - 26474036
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||    
T  26474079 cgcgtgttttccagcggctaaaaaatgtatgttccggcagtttt 26474036  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 27039688 - 27039650
Alignment:
Q  45 accaaaactgtaattcgctcatattacagggacgaaaag 83  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  27039688 accaaaaccggaattcgctcatattacagggacgaaaag 27039650  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 20573702 - 20573742
Alignment:
Q  192 gtgttttccggcggctaaaaaatgtttgttccggcggtttt 232  Q
    ||||||||||||||||||||||||| ||||| ||| |||||    
T  20573702 gtgttttccggcggctaaaaaatgtatgttctggcagtttt 20573742  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 27301309 - 27301349
Alignment:
Q  189 cgcgtgttttccggcggctaaaaaatgtttgttccggcggt 229  Q
    |||||||||||||||||||||||||| | ||||||| ||||    
T  27301309 cgcgtgttttccggcggctaaaaaatatatgttccgacggt 27301349  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 43401072 - 43401116
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag 83  Q
    ||||| |||||||||| |||||| |||||||||||| ||||||||    
T  43401072 acagggaccaaaactgaaattcgatcatattacaggaacgaaaag 43401116  T

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Target: scaffold0185 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 3925 - 3868
Alignment:
Q  39 acaggaaccaaaactgtaattcgctcatattacagggacgaaaag-gatatttaccct 95  Q
    ||||| || ||||| | |||||||| ||||||||||||||||||| ||||||||||||    
T  3925 acagggactaaaaccggaattcgctaatattacagggacgaaaagagatatttaccct 3868  T

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