View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6722_low_4 (Length: 615)
Name: NF6722_low_4
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 20096691 - 20096950
Alignment:
| Q |
19 |
attttccaaaataaagaaaagggtcacgatcgtgtcttgctttatttttattcctttcttcactctcgtgattttatcgttgcagctttaaactgagtga |
118 |
Q |
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| T |
20096691 |
attttccaaaataaagaaaagggtcacgatcgtgtcttgctttatttttattcctttcttcactctcgtgattttatcgttgcagctttaaactgagtga |
20096790 |
T |
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| Q |
119 |
aacaacacatatatgacaaaagcaaagtgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagcaatattctttctcactttttgtctcttt |
218 |
Q |
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| T |
20096791 |
aacaacacatatatgacaaaagcaaagtgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagctatattctttctcaccttttgtctcttt |
20096890 |
T |
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| Q |
219 |
agcattataaggcttcgtatcccgtcgtgtttctcatggccttgggagcaatattactat |
278 |
Q |
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| T |
20096891 |
agcattataaggcttcgtatctcgtcgtgtttctcatggccttgggagcaatattactat |
20096950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 308 - 597
Target Start/End: Original strand, 20096947 - 20097237
Alignment:
| Q |
308 |
ctatgtttgttttcatttttatagatcagcaaaggtgacttaaaagacatgtaatttagacttttgttttggatgttgaagatgcacattactcatgtga |
407 |
Q |
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| T |
20096947 |
ctatgtttgctttcattttta--gatcagcaaaggtgatttaaaagacatgtaatttagacttttgttttggttgttgaagatgcacattactcatgtga |
20097044 |
T |
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| Q |
408 |
tgaggaaacttttatgtgtcatttcat----gaagaagaagaacaagtgtcattacacacgagtttgcctatgattccaaatattgttacctacaaattt |
503 |
Q |
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| T |
20097045 |
tgaggaaacttttatgtgtcatttcattcatgaagaagaagaacaagtgtcattacacatgagtttgcctatgattccaa-tattgttacctacaaattt |
20097143 |
T |
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| Q |
504 |
atgtaccccatgtgcatgactaacttcaatgctcagtaaagtatatgaatgagtttgaactaccaatattgcgattcaaaattactagctgtat |
597 |
Q |
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| T |
20097144 |
atgtaccccatgtgcatgactaacttcaatgctcagtaaagtatatgaatgagtttgaactaccaatattgcgattgaaaattactagctgtat |
20097237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 19884007 - 19883820
Alignment:
| Q |
31 |
aaagaaaagggtcacgatcgtgtcttgctttatttttattcctttcttcactctcgtgattttatcgttgcagctttaaactgagtgaaacaacacatat |
130 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19884007 |
aaagcaaaggatcacgatcgtgtcttgctttatttttattcctttcttcactttcgtgtttttatcgttgcagctttaaactgagtgaaacaacacatat |
19883908 |
T |
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| Q |
131 |
a----tgacaaaagcaaagtgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagcaatattctttctcactttttgtct |
214 |
Q |
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| T |
19883907 |
atacgtgacaaaagcaaagtgcaatatgttcagtgttgagtgaaacttaagcttaagcaaaagttacatcctttctcactttttgtct |
19883820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 19883778 - 19883711
Alignment:
| Q |
260 |
ttgggagcaatattactatttatggttggataagttttcaaatattttctatgtttgttttcattttt |
327 |
Q |
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||||||||||||||| |||||||||||||| | |||||| ||||| ||||||| || ||||| |||| |
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| T |
19883778 |
ttgggagcaatattattatttatggttggaaattttttcacatattgtctatgtatggtttcactttt |
19883711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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