View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6722_low_40 (Length: 208)
Name: NF6722_low_40
Description: NF6722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6722_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 31282102 - 31282272
Alignment:
| Q |
19 |
aatatgtatgaaggttgaagcttctcaagtcgatcatatgattctcattgtccattatgtttaaactaccaacaatcagaaaccaacaatcaaacaaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31282102 |
aatatgtatgaaggttgaagcttctcaagtcgatcatatgattctcattgtccattatgtttaaactgccaacaatcagaaaccaacaatcaaacaaatg |
31282201 |
T |
|
| Q |
119 |
accaacctactcaaccaacttcttttctcaagaaacttgtgaagtttctactttaaatgctaagtaatttg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31282202 |
accaacctactcaaccaacttcttttctcaagaaacttgtgaagtttctactttaaatgctaagtaatttg |
31282272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 10247123 - 10247181
Alignment:
| Q |
95 |
cagaaaccaacaatcaaacaaatgaccaacctactcaaccaacttcttttctcaagaaa |
153 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||||| | |||||||| | |||||| |
|
|
| T |
10247123 |
cagaaaacaataatcaaacaaatgaccaacctgctcaacgatcttcttttatgaagaaa |
10247181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University